Wall clock time and date at job start Wed Apr 1 2020 00:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.36902 * 125.06028 * 2 1 4 4 H 0.97000 * 125.01353 * 359.96130 * 3 2 1 5 5 C 1.37129 * 109.97425 * 179.75551 * 3 2 1 6 6 C 1.40633 * 107.25029 * 0.38666 * 5 3 2 7 7 C 1.39538 * 120.04680 * 179.80297 * 6 5 3 8 8 C 1.37918 * 119.99151 * 359.74482 * 7 6 5 9 9 C 1.38322 * 120.58179 * 0.02562 * 8 7 6 10 10 C 1.39339 * 120.50734 * 359.95766 * 9 8 7 11 11 C 1.47503 * 120.21201 * 180.02562 * 10 9 8 12 12 O 1.21598 * 119.99968 * 226.81606 * 11 10 9 13 13 N 1.34777 * 120.00141 * 46.81256 * 11 10 9 14 14 C 1.47419 * 125.65103 * 175.19809 * 13 11 10 15 15 C 1.54907 * 104.83493 * 204.08024 * 14 13 11 16 16 H 1.09000 * 111.00304 * 81.06319 * 15 14 13 17 17 C 1.52996 * 111.00519 * 204.91719 * 15 14 13 18 18 C 1.55154 * 101.57928 * 322.99148 * 15 14 13 19 19 H 1.09003 * 110.72162 * 277.13635 * 18 15 14 20 20 N 1.46508 * 110.72018 * 154.04042 * 18 15 14 21 21 C 1.36934 * 119.99769 * 154.99407 * 20 18 15 22 22 H 1.07993 * 120.00247 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99733 * 180.02562 * 21 20 18 24 24 N 1.31624 * 120.00279 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00094 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47046 * 90.00005 * 25 23 21 27 27 H 1.48499 * 109.47229 * 209.99875 * 25 23 21 28 28 H 1.48498 * 109.47011 * 330.00094 * 25 23 21 29 29 C 1.47026 * 125.64647 * 355.14165 * 13 11 10 30 30 C 1.34206 * 125.06043 * 179.97438 * 2 1 3 31 31 C 1.50704 * 126.55363 * 0.02562 * 30 2 1 32 32 H 1.08999 * 109.46984 * 270.00115 * 1 2 3 33 33 H 1.08996 * 109.47108 * 30.00054 * 1 2 3 34 34 H 1.08994 * 109.46953 * 150.00106 * 1 2 3 35 35 H 1.08001 * 120.01174 * 179.76143 * 7 6 5 36 36 H 1.07992 * 119.70952 * 180.02562 * 8 7 6 37 37 H 1.08001 * 119.74356 * 179.97438 * 9 8 7 38 38 H 1.09006 * 110.36523 * 85.24157 * 14 13 11 39 39 H 1.09002 * 110.36585 * 322.92027 * 14 13 11 40 40 H 1.08999 * 109.46917 * 172.19809 * 17 15 14 41 41 H 1.09003 * 109.46838 * 292.19103 * 17 15 14 42 42 H 1.08994 * 109.47560 * 52.19715 * 17 15 14 43 43 H 0.97000 * 119.99602 * 335.00037 * 20 18 15 44 44 H 0.96997 * 120.00302 * 179.97438 * 24 23 21 45 45 H 1.09002 * 109.87916 * 59.57224 * 29 13 11 46 46 H 1.09001 * 110.00839 * 298.48121 * 29 13 11 47 47 H 1.09002 * 109.47181 * 270.00104 * 31 30 2 48 48 H 1.08996 * 109.46808 * 29.99829 * 31 30 2 49 49 H 1.08997 * 109.47148 * 149.99984 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2934 1.1206 0.0000 4 1 1.9628 2.0325 -0.0005 5 6 3.6174 0.7637 0.0055 6 6 3.6706 -0.6416 0.0001 7 6 4.9040 -1.2941 -0.0003 8 6 6.0720 -0.5607 -0.0006 9 6 6.0347 0.8220 0.0000 10 6 4.8155 1.4967 -0.0001 11 6 4.7834 2.9714 0.0000 12 8 4.0496 3.5635 0.7678 13 7 5.5673 3.6626 -0.8510 14 6 5.5630 5.1262 -1.0270 15 6 6.1180 5.3557 -2.4550 16 1 5.3400 5.2101 -3.2045 17 6 6.7463 6.7448 -2.5825 18 6 7.1978 4.2458 -2.5515 19 1 8.1284 4.5717 -2.0868 20 7 7.4241 3.8626 -3.9473 21 6 8.6233 3.3182 -4.3221 22 1 9.4022 3.1708 -3.5887 23 6 8.8378 2.9557 -5.6447 24 7 9.9904 2.4319 -6.0050 25 14 7.4908 3.2112 -6.9135 26 1 7.6314 4.5594 -7.5200 27 1 7.6063 2.1773 -7.9732 28 1 6.1640 3.1001 -6.2560 29 6 6.5692 3.0818 -1.7568 30 6 2.2779 -1.0985 0.0005 31 6 1.8026 -2.5287 0.0006 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8899 -0.5138 34 1 -0.3633 -0.8899 -0.5138 35 1 4.9441 -2.3734 -0.0005 36 1 7.0240 -1.0704 -0.0013 37 1 6.9576 1.3829 0.0001 38 1 6.2100 5.5991 -0.2881 39 1 4.5477 5.5149 -0.9476 40 1 7.2489 6.8291 -3.5460 41 1 5.9673 7.5039 -2.5115 42 1 7.4704 6.8911 -1.7810 43 1 6.7243 3.9947 -4.6060 44 1 10.1401 2.1782 -6.9291 45 1 6.0890 2.3824 -2.4412 46 1 7.3388 2.5676 -1.1812 47 1 1.6876 -2.8733 1.0283 48 1 0.8437 -2.5928 -0.5135 49 1 2.5327 -3.1542 -0.5128 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054805824.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:10 Heat of formation + Delta-G solvation = 32.008149 kcal Electronic energy + Delta-G solvation = -29886.711075 eV Core-core repulsion = 26007.019802 eV Total energy + Delta-G solvation = -3879.691272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.55738 -39.85826 -37.71618 -36.90741 -34.23668 -33.33401 -32.66351 -31.25964 -31.01463 -30.23842 -28.07977 -27.84990 -26.41166 -26.01251 -24.00618 -22.86479 -21.86114 -21.13291 -20.23753 -19.87679 -18.81347 -17.63713 -17.53133 -17.10600 -16.07446 -15.97291 -15.33417 -15.11134 -14.95046 -14.69045 -14.30229 -14.01530 -13.49203 -13.45431 -13.32213 -13.23922 -13.13844 -12.97481 -12.80719 -12.65284 -12.52811 -12.42858 -12.29670 -12.07331 -11.73585 -11.62691 -11.49977 -11.44387 -11.20412 -11.10560 -10.81667 -10.67445 -10.40948 -10.05555 -9.83997 -9.67594 -9.51078 -9.05297 -8.46475 -8.18868 -7.63372 -7.42885 -5.87243 -3.25184 0.80852 1.61922 2.37266 2.84688 3.03154 3.14941 3.30846 3.33649 3.39747 3.88366 4.45891 4.48860 4.50374 4.75038 4.88758 4.91228 4.99213 5.01093 5.03821 5.07747 5.16710 5.20529 5.33275 5.40808 5.49833 5.50520 5.59747 5.61837 5.64482 5.65036 5.68115 5.73365 5.80934 5.85578 5.89534 6.01938 6.05467 6.09143 6.25364 6.32404 6.35870 6.43345 6.45992 6.54516 6.62598 6.71407 6.74551 7.08102 7.44050 7.65479 7.86553 8.21448 8.31307 9.07478 9.79954 9.97914 11.30353 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.003391 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.420906 B = 8254.761316 C = 9302.456585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.073 3.927 3 N -0.583 5.583 4 H 0.418 0.582 5 C 0.146 3.854 6 C -0.110 4.110 7 C -0.050 4.050 8 C -0.150 4.150 9 C -0.059 4.059 10 C -0.138 4.138 11 C 0.574 3.426 12 O -0.557 6.557 13 N -0.606 5.606 14 C 0.115 3.885 15 C -0.119 4.119 16 H 0.080 0.920 17 C -0.134 4.134 18 C 0.182 3.818 19 H 0.079 0.921 20 N -0.734 5.734 21 C -0.252 4.252 22 H 0.093 0.907 23 C 0.012 3.988 24 N -0.928 5.928 25 Si 0.881 3.119 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.277 1.277 29 C 0.070 3.930 30 C -0.172 4.172 31 C -0.074 4.074 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.364 0.636 44 H 0.261 0.739 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.025 -4.175 12.937 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 N -0.185 5.185 4 H 0.255 0.745 5 C 0.036 3.964 6 C -0.115 4.115 7 C -0.069 4.069 8 C -0.169 4.169 9 C -0.078 4.078 10 C -0.144 4.144 11 C 0.364 3.636 12 O -0.437 6.437 13 N -0.338 5.338 14 C -0.008 4.008 15 C -0.139 4.139 16 H 0.098 0.902 17 C -0.192 4.192 18 C 0.070 3.930 19 H 0.097 0.903 20 N -0.375 5.375 21 C -0.382 4.382 22 H 0.111 0.889 23 C -0.185 4.185 24 N -0.575 5.575 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.204 1.204 29 C -0.055 4.055 30 C -0.179 4.179 31 C -0.131 4.131 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.197 0.803 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.266 -3.884 13.326 21.384 hybrid contribution -0.876 0.537 -1.087 1.496 sum -17.142 -3.347 12.239 21.327 Atomic orbital electron populations 1.20455 0.87777 1.03614 1.03061 1.20113 0.93301 0.85450 1.04588 1.41620 1.03943 1.08529 1.64451 0.74481 1.17789 0.83765 0.93363 1.01472 1.18993 0.93385 0.91295 1.07798 1.20635 0.90271 0.99553 0.96441 1.20828 0.98253 0.93427 1.04422 1.21183 0.95951 0.94708 0.95970 1.18705 0.91669 0.91907 1.12117 1.17956 0.79350 0.86750 0.79561 1.90744 1.42015 1.71056 1.39869 1.48455 1.38128 1.08050 1.39147 1.22275 1.01385 0.80399 0.96752 1.22698 0.98888 0.96833 0.95448 0.90164 1.21618 1.00159 0.94440 1.02972 1.21230 0.95617 0.89840 0.86265 0.90334 1.42708 1.15894 1.75518 1.03425 1.19062 0.90778 1.33772 0.94588 0.88917 1.24657 0.96519 1.00422 0.96895 1.69691 1.22867 1.47430 1.17494 0.86609 0.82175 0.77790 0.82279 1.20938 1.21611 1.20364 1.23433 0.90260 0.99576 0.92259 1.19994 0.90337 0.94760 1.12801 1.20085 1.00646 0.90893 1.01482 0.90475 0.91406 0.89688 0.85739 0.85140 0.84736 0.91252 0.91020 0.91324 0.93108 0.92460 0.80289 0.92886 0.90731 0.91370 0.91972 0.91997 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.18 36.01 0.37 -0.30 16 2 C 0.07 0.83 7.08 -81.75 -0.58 0.25 16 3 N -0.58 -7.80 6.04 -6.76 -0.04 -7.84 16 4 H 0.42 5.26 8.88 -40.82 -0.36 4.90 16 5 C 0.15 2.23 6.93 -83.76 -0.58 1.65 16 6 C -0.11 -1.54 6.35 -105.15 -0.67 -2.21 16 7 C -0.05 -0.63 10.09 -39.21 -0.40 -1.03 16 8 C -0.15 -1.91 10.00 -39.67 -0.40 -2.31 16 9 C -0.06 -0.84 8.50 -39.14 -0.33 -1.17 16 10 C -0.14 -2.19 5.44 -104.88 -0.57 -2.76 16 11 C 0.57 9.72 7.40 -12.48 -0.09 9.63 16 12 O -0.56 -10.48 17.22 5.28 0.09 -10.39 16 13 N -0.61 -9.63 3.33 -171.76 -0.57 -10.20 16 14 C 0.11 1.63 6.36 -2.53 -0.02 1.62 16 15 C -0.12 -1.74 3.27 -88.48 -0.29 -2.03 16 16 H 0.08 1.22 8.01 -51.93 -0.42 0.80 16 17 C -0.13 -1.73 9.31 37.16 0.35 -1.39 16 18 C 0.18 3.20 3.08 -66.10 -0.20 3.00 16 19 H 0.08 1.40 7.99 -51.93 -0.41 0.98 16 20 N -0.73 -16.00 4.96 -51.65 -0.26 -16.26 16 21 C -0.25 -6.63 10.44 -15.06 -0.16 -6.79 16 22 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 23 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 24 N -0.93 -27.97 13.97 55.49 0.78 -27.20 16 25 Si 0.88 21.26 27.74 -169.99 -4.71 16.55 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 29 C 0.07 1.17 5.38 -3.06 -0.02 1.15 16 30 C -0.17 -2.05 6.32 -102.68 -0.65 -2.70 16 31 C -0.07 -0.63 10.17 36.01 0.37 -0.26 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.50 7.05 -51.93 -0.37 0.13 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.13 1.81 5.85 -52.49 -0.31 1.50 16 38 H 0.07 0.92 7.98 -51.93 -0.41 0.51 16 39 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 43 H 0.36 7.94 5.62 -40.82 -0.23 7.71 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.07 1.38 8.03 -51.93 -0.42 0.96 16 46 H 0.07 1.09 5.95 -51.93 -0.31 0.78 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.43 7.06 -51.93 -0.37 0.06 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 395.69 15.07 5.96 5.96 Total: -1.00 -32.55 395.69 -10.13 -42.68 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -7.42 Total: 12.12 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -3.96 Total: -5.42 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.09 Total: -61.50 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.71 Total: 16.55 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.55 -10.13 -42.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054805824.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.689 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds