Wall clock time and date at job start Wed Apr 1 2020 00:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.36902 * 125.06028 * 2 1 4 4 H 0.97000 * 125.01353 * 359.96130 * 3 2 1 5 5 C 1.37129 * 109.97425 * 179.75551 * 3 2 1 6 6 C 1.40633 * 107.25029 * 0.38666 * 5 3 2 7 7 C 1.39538 * 120.04680 * 179.80297 * 6 5 3 8 8 C 1.37918 * 119.99151 * 359.74482 * 7 6 5 9 9 C 1.38322 * 120.58179 * 0.02562 * 8 7 6 10 10 C 1.39339 * 120.50734 * 359.95766 * 9 8 7 11 11 C 1.47503 * 120.21201 * 180.02562 * 10 9 8 12 12 O 1.21598 * 119.99968 * 226.81606 * 11 10 9 13 13 N 1.34777 * 120.00141 * 46.81256 * 11 10 9 14 14 C 1.47419 * 125.65103 * 175.19809 * 13 11 10 15 15 C 1.54907 * 104.83493 * 204.08024 * 14 13 11 16 16 H 1.09000 * 111.00304 * 81.06319 * 15 14 13 17 17 C 1.52996 * 111.00519 * 204.91719 * 15 14 13 18 18 C 1.55154 * 101.57928 * 322.99148 * 15 14 13 19 19 H 1.09003 * 110.72162 * 277.13635 * 18 15 14 20 20 N 1.46508 * 110.72018 * 154.04042 * 18 15 14 21 21 C 1.36934 * 119.99769 * 154.99407 * 20 18 15 22 22 H 1.07993 * 120.00247 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99733 * 180.02562 * 21 20 18 24 24 N 1.31624 * 120.00279 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00094 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47046 * 90.00005 * 25 23 21 27 27 H 1.48499 * 109.47229 * 209.99875 * 25 23 21 28 28 H 1.48498 * 109.47011 * 330.00094 * 25 23 21 29 29 C 1.47026 * 125.64647 * 355.14165 * 13 11 10 30 30 C 1.34206 * 125.06043 * 179.97438 * 2 1 3 31 31 C 1.50704 * 126.55363 * 0.02562 * 30 2 1 32 32 H 1.08999 * 109.46984 * 270.00115 * 1 2 3 33 33 H 1.08996 * 109.47108 * 30.00054 * 1 2 3 34 34 H 1.08994 * 109.46953 * 150.00106 * 1 2 3 35 35 H 1.08001 * 120.01174 * 179.76143 * 7 6 5 36 36 H 1.07992 * 119.70952 * 180.02562 * 8 7 6 37 37 H 1.08001 * 119.74356 * 179.97438 * 9 8 7 38 38 H 1.09006 * 110.36523 * 85.24157 * 14 13 11 39 39 H 1.09002 * 110.36585 * 322.92027 * 14 13 11 40 40 H 1.08999 * 109.46917 * 172.19809 * 17 15 14 41 41 H 1.09003 * 109.46838 * 292.19103 * 17 15 14 42 42 H 1.08994 * 109.47560 * 52.19715 * 17 15 14 43 43 H 0.97000 * 119.99602 * 335.00037 * 20 18 15 44 44 H 0.96997 * 120.00302 * 179.97438 * 24 23 21 45 45 H 1.09002 * 109.87916 * 59.57224 * 29 13 11 46 46 H 1.09001 * 110.00839 * 298.48121 * 29 13 11 47 47 H 1.09002 * 109.47181 * 270.00104 * 31 30 2 48 48 H 1.08996 * 109.46808 * 29.99829 * 31 30 2 49 49 H 1.08997 * 109.47148 * 149.99984 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2934 1.1206 0.0000 4 1 1.9628 2.0325 -0.0005 5 6 3.6174 0.7637 0.0055 6 6 3.6706 -0.6416 0.0001 7 6 4.9040 -1.2941 -0.0003 8 6 6.0720 -0.5607 -0.0006 9 6 6.0347 0.8220 0.0000 10 6 4.8155 1.4967 -0.0001 11 6 4.7834 2.9714 0.0000 12 8 4.0496 3.5635 0.7678 13 7 5.5673 3.6626 -0.8510 14 6 5.5630 5.1262 -1.0270 15 6 6.1180 5.3557 -2.4550 16 1 5.3400 5.2101 -3.2045 17 6 6.7463 6.7448 -2.5825 18 6 7.1978 4.2458 -2.5515 19 1 8.1284 4.5717 -2.0868 20 7 7.4241 3.8626 -3.9473 21 6 8.6233 3.3182 -4.3221 22 1 9.4022 3.1708 -3.5887 23 6 8.8378 2.9557 -5.6447 24 7 9.9904 2.4319 -6.0050 25 14 7.4908 3.2112 -6.9135 26 1 7.6314 4.5594 -7.5200 27 1 7.6063 2.1773 -7.9732 28 1 6.1640 3.1001 -6.2560 29 6 6.5692 3.0818 -1.7568 30 6 2.2779 -1.0985 0.0005 31 6 1.8026 -2.5287 0.0006 32 1 -0.3633 0.0000 1.0277 33 1 -0.3633 0.8899 -0.5138 34 1 -0.3633 -0.8899 -0.5138 35 1 4.9441 -2.3734 -0.0005 36 1 7.0240 -1.0704 -0.0013 37 1 6.9576 1.3829 0.0001 38 1 6.2100 5.5991 -0.2881 39 1 4.5477 5.5149 -0.9476 40 1 7.2489 6.8291 -3.5460 41 1 5.9673 7.5039 -2.5115 42 1 7.4704 6.8911 -1.7810 43 1 6.7243 3.9947 -4.6060 44 1 10.1401 2.1782 -6.9291 45 1 6.0890 2.3824 -2.4412 46 1 7.3388 2.5676 -1.1812 47 1 1.6876 -2.8733 1.0283 48 1 0.8437 -2.5928 -0.5135 49 1 2.5327 -3.1542 -0.5128 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054805824.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:09 Heat of formation + Delta-G solvation = 12.712744 kcal Electronic energy + Delta-G solvation = -29887.547786 eV Core-core repulsion = 26007.019802 eV Total energy + Delta-G solvation = -3880.527984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.54639 -41.13076 -39.06387 -37.95147 -35.99333 -34.30450 -33.98067 -32.95946 -31.99627 -31.22678 -29.56299 -28.73553 -27.54435 -26.86656 -25.70895 -24.10566 -23.01449 -22.40446 -21.65849 -20.96310 -19.82716 -19.54537 -18.61646 -18.27346 -17.29859 -17.27843 -16.45094 -16.39172 -16.04727 -15.98487 -15.74809 -15.17333 -14.92209 -14.84971 -14.64280 -14.31897 -14.07315 -13.94374 -13.77178 -13.65768 -13.63405 -13.55669 -13.24469 -13.14885 -12.98571 -12.96079 -12.77815 -12.58143 -12.45000 -12.25565 -12.16189 -12.07126 -11.95709 -11.80643 -11.45525 -11.14077 -10.95437 -10.52599 -9.78827 -9.37424 -9.20536 -8.56918 -8.01428 -5.36370 -0.24059 0.57322 1.34641 1.38820 1.40432 1.47169 1.69205 1.91413 2.09463 2.48161 2.82153 3.21023 3.29190 3.56891 3.58605 3.69257 3.79130 3.90449 3.96486 4.07324 4.18208 4.26307 4.28963 4.36450 4.37531 4.43613 4.56669 4.58717 4.69694 4.70330 4.78992 4.83031 4.84551 4.94763 4.98371 5.02858 5.06784 5.07728 5.13574 5.14413 5.23164 5.26293 5.37485 5.45140 5.52290 5.69847 5.78036 5.85196 6.10382 6.21797 6.31807 6.52528 6.90970 7.06342 7.80200 7.98651 9.19371 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.003391 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.420906 B = 8254.761316 C = 9302.456585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.068 3.932 3 N -0.589 5.589 4 H 0.417 0.583 5 C 0.119 3.881 6 C -0.129 4.129 7 C -0.048 4.048 8 C -0.157 4.157 9 C -0.068 4.068 10 C -0.164 4.164 11 C 0.575 3.425 12 O -0.580 6.580 13 N -0.604 5.604 14 C 0.115 3.885 15 C -0.106 4.106 16 H 0.078 0.922 17 C -0.130 4.130 18 C 0.175 3.825 19 H 0.077 0.923 20 N -0.736 5.736 21 C -0.229 4.229 22 H 0.066 0.934 23 C -0.054 4.054 24 N -0.979 5.979 25 Si 0.945 3.055 26 H -0.277 1.277 27 H -0.299 1.299 28 H -0.258 1.258 29 C 0.084 3.916 30 C -0.186 4.186 31 C -0.071 4.071 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.366 0.634 44 H 0.257 0.743 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.469 -4.433 13.425 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 N -0.192 5.192 4 H 0.254 0.746 5 C 0.009 3.991 6 C -0.134 4.134 7 C -0.066 4.066 8 C -0.176 4.176 9 C -0.088 4.088 10 C -0.170 4.170 11 C 0.365 3.635 12 O -0.462 6.462 13 N -0.336 5.336 14 C -0.007 4.007 15 C -0.126 4.126 16 H 0.097 0.903 17 C -0.188 4.188 18 C 0.065 3.935 19 H 0.095 0.905 20 N -0.378 5.378 21 C -0.360 4.360 22 H 0.084 0.916 23 C -0.246 4.246 24 N -0.629 5.629 25 Si 0.773 3.227 26 H -0.203 1.203 27 H -0.226 1.226 28 H -0.183 1.183 29 C -0.041 4.041 30 C -0.192 4.192 31 C -0.128 4.128 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.153 0.847 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.200 0.800 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.754 -4.116 13.857 23.678 hybrid contribution -0.124 0.600 -1.106 1.264 sum -18.877 -3.516 12.750 23.050 Atomic orbital electron populations 1.20597 0.84840 1.04888 1.04290 1.20827 0.95098 0.84638 1.03278 1.41784 1.03698 1.09148 1.64525 0.74575 1.18066 0.84367 0.94254 1.02455 1.19463 0.94989 0.91075 1.07828 1.21006 0.89695 1.00998 0.94914 1.21124 0.99520 0.92897 1.04019 1.21314 0.95553 0.95638 0.96266 1.18778 0.92676 0.91348 1.14174 1.18164 0.78850 0.87320 0.79139 1.90713 1.43019 1.71678 1.40838 1.48447 1.37714 1.08761 1.38659 1.22390 1.02119 0.79484 0.96691 1.22613 0.97601 0.96705 0.95663 0.90321 1.21600 1.00942 0.93785 1.02448 1.21411 0.96761 0.91199 0.84118 0.90503 1.42647 1.14429 1.75394 1.05297 1.19024 0.91424 1.31712 0.93801 0.91591 1.25370 0.98743 1.01386 0.99146 1.69857 1.25312 1.50006 1.17699 0.85562 0.80253 0.77410 0.79428 1.20315 1.22616 1.18267 1.23097 0.90320 0.98675 0.92056 1.20460 0.89373 0.96585 1.12771 1.20162 1.01522 0.88673 1.02463 0.89136 0.90721 0.87792 0.82961 0.82939 0.84668 0.89876 0.90326 0.92833 0.90642 0.91552 0.80036 0.93359 0.92550 0.90896 0.90934 0.90131 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 10.18 71.24 0.73 -0.35 16 2 C 0.07 1.46 7.08 40.85 0.29 1.75 16 3 N -0.59 -15.62 6.04 -175.29 -1.06 -16.68 16 4 H 0.42 10.58 8.88 -92.71 -0.82 9.76 16 5 C 0.12 3.65 6.93 39.44 0.27 3.92 16 6 C -0.13 -3.51 6.35 -20.21 -0.13 -3.64 16 7 C -0.05 -1.14 10.09 22.51 0.23 -0.92 16 8 C -0.16 -3.88 10.00 22.21 0.22 -3.66 16 9 C -0.07 -1.97 8.50 22.56 0.19 -1.78 16 10 C -0.16 -5.27 5.44 -20.03 -0.11 -5.38 16 11 C 0.57 19.56 7.40 86.69 0.64 20.20 16 12 O -0.58 -21.96 17.22 -4.02 -0.07 -22.03 16 13 N -0.60 -18.95 3.33 -815.58 -2.71 -21.66 16 14 C 0.12 3.10 6.36 86.86 0.55 3.65 16 15 C -0.11 -2.92 3.27 -9.40 -0.03 -2.95 16 16 H 0.08 2.23 8.01 -2.39 -0.02 2.21 16 17 C -0.13 -3.07 9.31 71.98 0.67 -2.40 16 18 C 0.18 6.04 3.08 46.18 0.14 6.18 16 19 H 0.08 2.70 7.99 -2.39 -0.02 2.68 16 20 N -0.74 -31.67 4.96 -317.33 -1.57 -33.25 16 21 C -0.23 -12.15 10.44 84.03 0.88 -11.27 16 22 H 0.07 3.81 8.06 -2.91 -0.02 3.78 16 23 C -0.05 -3.06 5.50 84.86 0.47 -2.60 16 24 N -0.98 -60.49 13.97 21.65 0.30 -60.19 16 25 Si 0.95 43.99 27.74 68.60 1.90 45.89 16 26 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.26 -10.98 6.52 99.48 0.65 -10.34 16 29 C 0.08 2.79 5.38 86.73 0.47 3.26 16 30 C -0.19 -4.13 6.32 -18.61 -0.12 -4.25 16 31 C -0.07 -1.03 10.17 71.24 0.72 -0.30 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.87 7.05 -2.39 -0.02 0.85 16 35 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.14 3.71 5.85 -2.91 -0.02 3.69 16 38 H 0.08 2.04 7.98 -2.38 -0.02 2.02 16 39 H 0.08 2.05 8.09 -2.39 -0.02 2.04 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 1.44 8.07 -2.39 -0.02 1.42 16 43 H 0.37 15.47 5.62 -92.71 -0.52 14.94 16 44 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.06 2.10 8.03 -2.39 -0.02 2.08 16 46 H 0.07 2.34 5.95 -2.39 -0.01 2.33 16 47 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.08 0.85 7.06 -2.39 -0.02 0.83 16 49 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -71.67 395.69 2.45 -69.22 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: -0.42 Total: 39.24 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 6.08 Total: -0.54 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -5.04 Total: -131.78 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.07 Total: -22.03 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.90 Total: 45.89 kcal Total: -71.67 2.45 -69.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054805824.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.928 kcal (2) G-P(sol) polarization free energy of solvation -71.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds