Wall clock time and date at job start Wed Apr 1 2020 00:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35742 * 120.33336 * 2 1 4 4 C 1.40823 * 119.71787 * 180.02562 * 3 2 1 5 5 C 1.34537 * 120.58897 * 359.97438 * 4 3 2 6 6 N 1.37434 * 120.74042 * 359.97438 * 5 4 3 7 7 C 1.35134 * 131.28888 * 180.33837 * 6 5 4 8 8 C 1.38057 * 108.77007 * 180.14450 * 7 6 5 9 9 C 1.47500 * 126.37228 * 179.83005 * 8 7 6 10 10 O 1.21592 * 119.99927 * 179.69052 * 9 8 7 11 11 N 1.34776 * 120.00100 * 359.68378 * 9 8 7 12 12 C 1.46498 * 120.00096 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.52561 * 34.91980 * 12 11 9 14 14 C 1.53037 * 109.49664 * 155.00179 * 12 11 9 15 15 C 1.53041 * 109.53612 * 181.31298 * 14 12 11 16 16 C 1.53193 * 109.31300 * 298.63310 * 15 14 12 17 17 H 1.08999 * 109.58326 * 294.84905 * 16 15 14 18 18 C 1.53006 * 109.58433 * 174.56357 * 16 15 14 19 19 N 1.46917 * 108.77325 * 54.63612 * 16 15 14 20 20 C 1.36945 * 120.63269 * 126.36835 * 19 16 15 21 21 H 1.07999 * 119.99653 * 330.19743 * 20 19 16 22 22 C 1.38810 * 120.00178 * 150.19385 * 20 19 16 23 23 N 1.31620 * 119.99942 * 344.48884 * 22 20 19 24 24 Si 1.86795 * 119.99872 * 164.48482 * 22 20 19 25 25 H 1.48497 * 109.47152 * 60.00445 * 24 22 20 26 26 H 1.48507 * 109.47028 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47373 * 300.00024 * 24 22 20 28 28 C 1.46924 * 118.74011 * 306.38942 * 19 16 15 29 29 C 1.41201 * 107.25409 * 359.56265 * 8 7 6 30 30 C 1.37953 * 119.80869 * 0.02562 * 6 5 4 31 31 H 1.09003 * 109.47685 * 270.00952 * 1 2 3 32 32 H 1.09005 * 109.47302 * 30.01551 * 1 2 3 33 33 H 1.09001 * 109.47122 * 150.01660 * 1 2 3 34 34 H 1.07996 * 120.13649 * 0.02562 * 3 2 1 35 35 H 1.08010 * 119.70688 * 179.97438 * 4 3 2 36 36 H 1.07998 * 119.63110 * 179.97438 * 5 4 3 37 37 H 1.08002 * 125.60998 * 359.96742 * 7 6 5 38 38 H 0.97004 * 119.99477 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.46406 * 61.29570 * 14 12 11 40 40 H 1.09001 * 109.45933 * 301.33182 * 14 12 11 41 41 H 1.09010 * 109.49639 * 178.68188 * 15 14 12 42 42 H 1.08997 * 109.49680 * 58.58637 * 15 14 12 43 43 H 1.09003 * 109.46928 * 60.28838 * 18 16 15 44 44 H 1.08996 * 109.46860 * 180.28361 * 18 16 15 45 45 H 1.08996 * 109.46920 * 300.28384 * 18 16 15 46 46 H 0.97005 * 119.99905 * 180.02562 * 23 22 20 47 47 H 1.09006 * 109.58907 * 293.81968 * 28 19 16 48 48 H 1.09004 * 109.70724 * 173.46839 * 28 19 16 49 49 H 1.08005 * 126.56391 * 180.22456 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6006 1.1565 -0.0005 5 6 4.2728 -0.0090 -0.0006 6 7 3.6005 -1.2077 0.0005 7 6 4.0499 -2.4821 0.0067 8 6 2.9649 -3.3357 0.0015 9 6 3.0118 -4.8100 0.0020 10 8 1.9787 -5.4511 0.0027 11 7 4.1999 -5.4464 0.0015 12 6 4.2465 -6.9107 0.0014 13 1 3.4160 -7.3015 -0.5863 14 6 5.5693 -7.3795 -0.6088 15 6 5.6051 -8.9092 -0.6393 16 6 5.5156 -9.4468 0.7924 17 1 6.4041 -9.1506 1.3501 18 6 5.4144 -10.9732 0.7617 19 7 4.3203 -8.8839 1.4350 20 6 3.3901 -9.7029 2.0174 21 1 3.2350 -10.7011 1.6355 22 6 2.6468 -9.2502 3.0988 23 7 3.0290 -8.1762 3.7567 24 14 1.1038 -10.1650 3.6200 25 1 1.4556 -11.5606 3.9858 26 1 0.4965 -9.4839 4.7916 27 1 0.1325 -10.1774 2.4970 28 6 4.1417 -7.4256 1.4404 29 6 1.8019 -2.5350 0.0020 30 6 2.2210 -1.2202 0.0010 31 1 -0.3634 0.0002 1.0276 32 1 -0.3634 0.8899 -0.5141 33 1 -0.3633 -0.8901 -0.5136 34 1 1.6602 2.1113 0.0004 35 1 4.1459 2.0888 -0.0010 36 1 5.3527 -0.0025 -0.0014 37 1 5.0871 -2.7831 0.0118 38 1 5.0241 -4.9349 0.0012 39 1 6.3987 -7.0089 -0.0064 40 1 5.6576 -6.9939 -1.6244 41 1 6.5375 -9.2423 -1.0954 42 1 4.7618 -9.2813 -1.2210 43 1 6.2999 -11.3864 0.2787 44 1 5.3458 -11.3533 1.7809 45 1 4.5255 -11.2672 0.2036 46 1 2.5098 -7.8600 4.5126 47 1 4.9180 -6.9645 2.0510 48 1 3.1613 -7.1769 1.8469 49 1 0.7800 -2.8846 0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071987918.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:41 Heat of formation + Delta-G solvation = 53.760648 kcal Electronic energy + Delta-G solvation = -29597.727103 eV Core-core repulsion = 25718.979090 eV Total energy + Delta-G solvation = -3878.748013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.31977 -39.23597 -37.56705 -36.65529 -34.35947 -34.17444 -32.74058 -31.09296 -30.15061 -29.74545 -28.51587 -27.09160 -26.01181 -24.97971 -23.48255 -22.19837 -22.09492 -21.57939 -20.40036 -19.63466 -19.06096 -17.82531 -16.90831 -16.37505 -16.10563 -15.64767 -15.39113 -15.29649 -14.83408 -14.34633 -14.07234 -13.86766 -13.72758 -13.60299 -13.45081 -13.30320 -13.22519 -12.92655 -12.64652 -12.38372 -12.16843 -11.92934 -11.73757 -11.69112 -11.42106 -11.25670 -11.06205 -10.82913 -10.63136 -10.45411 -10.34850 -10.25477 -10.20658 -9.90932 -9.70967 -9.37833 -9.33079 -8.64215 -8.37842 -8.32777 -7.46770 -6.53014 -5.66690 -3.11545 0.59476 1.21229 2.23579 2.53898 3.29303 3.47557 3.54249 3.56512 3.66555 3.92595 4.26659 4.48540 4.58297 4.60683 4.74544 4.84821 5.00763 5.26405 5.31398 5.38901 5.39600 5.42038 5.43843 5.56253 5.62990 5.69473 5.74783 5.76943 5.84215 5.94177 6.03552 6.16375 6.18914 6.25138 6.32671 6.38202 6.44744 6.51363 6.58026 6.65402 6.69156 6.74497 6.81979 7.04957 7.10293 7.12875 7.18578 7.40909 7.82772 7.93064 8.07388 8.57992 8.80227 9.32108 9.96457 10.52068 11.41391 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.002819 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.725991 B = 9929.621741 C =11272.837867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.035 4.035 3 C -0.149 4.149 4 C -0.132 4.132 5 C 0.032 3.968 6 N -0.338 5.338 7 C -0.013 4.013 8 C -0.156 4.156 9 C 0.581 3.419 10 O -0.529 6.529 11 N -0.717 5.717 12 C 0.118 3.882 13 H 0.082 0.918 14 C -0.116 4.116 15 C -0.126 4.126 16 C 0.165 3.835 17 H 0.024 0.976 18 C -0.136 4.136 19 N -0.583 5.583 20 C -0.254 4.254 21 H 0.069 0.931 22 C 0.007 3.993 23 N -0.900 5.900 24 Si 0.900 3.100 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.169 3.831 29 C -0.131 4.131 30 C 0.023 3.977 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.143 0.857 36 H 0.160 0.840 37 H 0.175 0.825 38 H 0.389 0.611 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.253 0.747 47 H 0.016 0.984 48 H 0.093 0.907 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 18.938 -9.991 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.036 4.036 3 C -0.169 4.169 4 C -0.152 4.152 5 C -0.086 4.086 6 N -0.001 5.001 7 C -0.147 4.147 8 C -0.164 4.164 9 C 0.367 3.633 10 O -0.406 6.406 11 N -0.367 5.367 12 C 0.013 3.987 13 H 0.101 0.899 14 C -0.154 4.154 15 C -0.166 4.166 16 C 0.059 3.941 17 H 0.041 0.959 18 C -0.194 4.194 19 N -0.306 5.306 20 C -0.384 4.384 21 H 0.086 0.914 22 C -0.192 4.192 23 N -0.543 5.543 24 Si 0.730 3.270 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.209 1.209 28 C 0.042 3.958 29 C -0.156 4.156 30 C -0.081 4.081 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.161 0.839 36 H 0.177 0.823 37 H 0.193 0.807 38 H 0.222 0.778 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.034 0.966 48 H 0.111 0.889 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.951 18.661 -9.826 21.457 hybrid contribution -0.125 0.038 0.421 0.440 sum 3.826 18.698 -9.405 21.277 Atomic orbital electron populations 1.20752 0.89648 1.03426 1.03080 1.19382 0.96477 0.90131 0.97578 1.20766 0.93662 0.97782 1.04665 1.20656 0.94818 0.96970 1.02730 1.21618 0.98307 0.83254 1.05387 1.41236 1.07169 1.05282 1.46400 1.22115 0.99460 0.80522 1.12594 1.19837 0.93155 0.93175 1.10209 1.17353 0.84003 0.85412 0.76577 1.90814 1.33176 1.67194 1.49367 1.45918 1.07319 1.08154 1.75290 1.21973 0.97625 0.77218 1.01918 0.89947 1.21677 0.97190 0.97171 0.99364 1.22051 1.00585 0.94206 0.99761 1.20478 0.90414 0.92581 0.90666 0.95851 1.21796 0.99649 0.95928 1.01986 1.44004 1.20156 1.01520 1.64959 1.19074 1.13113 0.97887 1.08301 0.91352 1.25081 1.00165 0.98153 0.95780 1.69994 1.38482 1.25454 1.20397 0.86408 0.83827 0.78957 0.77794 1.21004 1.21705 1.20888 1.21061 1.02434 0.83210 0.89062 1.21118 0.98966 0.88742 1.06726 1.18623 0.81796 0.94940 1.12763 0.90355 0.90966 0.90671 0.85093 0.83883 0.82270 0.80738 0.77802 0.92371 0.93118 0.92759 0.92057 0.94398 0.92021 0.92797 0.93707 0.96587 0.88869 0.82788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.91 36.00 0.36 -0.56 16 2 C -0.03 -0.36 5.90 -104.32 -0.62 -0.98 16 3 C -0.15 -1.26 9.72 -39.50 -0.38 -1.65 16 4 C -0.13 -1.00 9.97 -39.91 -0.40 -1.40 16 5 C 0.03 0.28 10.89 -16.35 -0.18 0.10 16 6 N -0.34 -4.00 2.92 -60.42 -0.18 -4.18 16 7 C -0.01 -0.17 11.09 -16.16 -0.18 -0.35 16 8 C -0.16 -2.48 6.12 -105.06 -0.64 -3.12 16 9 C 0.58 11.15 7.78 -12.49 -0.10 11.05 16 10 O -0.53 -12.64 16.58 5.28 0.09 -12.55 16 11 N -0.72 -12.28 5.07 -54.75 -0.28 -12.56 16 12 C 0.12 2.36 2.60 -67.81 -0.18 2.18 16 13 H 0.08 1.88 7.58 -51.93 -0.39 1.49 16 14 C -0.12 -1.90 5.35 -26.69 -0.14 -2.05 16 15 C -0.13 -2.18 5.37 -26.61 -0.14 -2.33 16 16 C 0.17 3.44 3.49 -67.60 -0.24 3.20 16 17 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 18 C -0.14 -2.60 7.95 37.16 0.30 -2.30 16 19 N -0.58 -14.80 2.99 -164.77 -0.49 -15.29 16 20 C -0.25 -7.09 8.58 -15.06 -0.13 -7.22 16 21 H 0.07 1.85 6.24 -52.49 -0.33 1.53 16 22 C 0.01 0.21 4.94 -17.43 -0.09 0.13 16 23 N -0.90 -27.21 11.23 55.49 0.62 -26.59 16 24 Si 0.90 22.85 29.58 -169.99 -5.03 17.82 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 28 C 0.17 4.20 4.86 -3.71 -0.02 4.18 16 29 C -0.13 -1.99 10.27 -38.55 -0.40 -2.39 16 30 C 0.02 0.30 6.60 -84.00 -0.55 -0.26 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.07 0.64 7.70 -51.93 -0.40 0.24 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 36 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.18 1.54 7.42 -52.49 -0.39 1.15 16 38 H 0.39 5.17 7.50 -40.82 -0.31 4.86 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 45 H 0.05 1.05 7.42 -51.93 -0.39 0.66 16 46 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 2.74 6.15 -51.93 -0.32 2.42 16 49 H 0.15 2.30 7.93 -52.48 -0.42 1.88 16 LS Contribution 392.40 15.07 5.91 5.91 Total: -1.00 -35.44 392.40 -10.62 -46.06 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.54 Total: 5.12 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.72 Total: -3.74 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.32 Total: -58.61 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.44 -10.62 -46.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071987918.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.819 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds