Wall clock time and date at job start Wed Apr 1 2020 00:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35742 * 120.33336 * 2 1 4 4 C 1.40823 * 119.71787 * 180.02562 * 3 2 1 5 5 C 1.34537 * 120.58897 * 359.97438 * 4 3 2 6 6 N 1.37434 * 120.74042 * 359.97438 * 5 4 3 7 7 C 1.35134 * 131.28888 * 180.33837 * 6 5 4 8 8 C 1.38057 * 108.77007 * 180.14450 * 7 6 5 9 9 C 1.47500 * 126.37228 * 179.83005 * 8 7 6 10 10 O 1.21592 * 119.99927 * 179.69052 * 9 8 7 11 11 N 1.34776 * 120.00100 * 359.68378 * 9 8 7 12 12 C 1.46498 * 120.00096 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.52561 * 34.91980 * 12 11 9 14 14 C 1.53037 * 109.49664 * 155.00179 * 12 11 9 15 15 C 1.53041 * 109.53612 * 181.31298 * 14 12 11 16 16 C 1.53193 * 109.31300 * 298.63310 * 15 14 12 17 17 H 1.08999 * 109.58326 * 294.84905 * 16 15 14 18 18 C 1.53006 * 109.58433 * 174.56357 * 16 15 14 19 19 N 1.46917 * 108.77325 * 54.63612 * 16 15 14 20 20 C 1.36945 * 120.63269 * 126.36835 * 19 16 15 21 21 H 1.07999 * 119.99653 * 330.19743 * 20 19 16 22 22 C 1.38810 * 120.00178 * 150.19385 * 20 19 16 23 23 N 1.31620 * 119.99942 * 344.48884 * 22 20 19 24 24 Si 1.86795 * 119.99872 * 164.48482 * 22 20 19 25 25 H 1.48497 * 109.47152 * 60.00445 * 24 22 20 26 26 H 1.48507 * 109.47028 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47373 * 300.00024 * 24 22 20 28 28 C 1.46924 * 118.74011 * 306.38942 * 19 16 15 29 29 C 1.41201 * 107.25409 * 359.56265 * 8 7 6 30 30 C 1.37953 * 119.80869 * 0.02562 * 6 5 4 31 31 H 1.09003 * 109.47685 * 270.00952 * 1 2 3 32 32 H 1.09005 * 109.47302 * 30.01551 * 1 2 3 33 33 H 1.09001 * 109.47122 * 150.01660 * 1 2 3 34 34 H 1.07996 * 120.13649 * 0.02562 * 3 2 1 35 35 H 1.08010 * 119.70688 * 179.97438 * 4 3 2 36 36 H 1.07998 * 119.63110 * 179.97438 * 5 4 3 37 37 H 1.08002 * 125.60998 * 359.96742 * 7 6 5 38 38 H 0.97004 * 119.99477 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.46406 * 61.29570 * 14 12 11 40 40 H 1.09001 * 109.45933 * 301.33182 * 14 12 11 41 41 H 1.09010 * 109.49639 * 178.68188 * 15 14 12 42 42 H 1.08997 * 109.49680 * 58.58637 * 15 14 12 43 43 H 1.09003 * 109.46928 * 60.28838 * 18 16 15 44 44 H 1.08996 * 109.46860 * 180.28361 * 18 16 15 45 45 H 1.08996 * 109.46920 * 300.28384 * 18 16 15 46 46 H 0.97005 * 119.99905 * 180.02562 * 23 22 20 47 47 H 1.09006 * 109.58907 * 293.81968 * 28 19 16 48 48 H 1.09004 * 109.70724 * 173.46839 * 28 19 16 49 49 H 1.08005 * 126.56391 * 180.22456 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6006 1.1565 -0.0005 5 6 4.2728 -0.0090 -0.0006 6 7 3.6005 -1.2077 0.0005 7 6 4.0499 -2.4821 0.0067 8 6 2.9649 -3.3357 0.0015 9 6 3.0118 -4.8100 0.0020 10 8 1.9787 -5.4511 0.0027 11 7 4.1999 -5.4464 0.0015 12 6 4.2465 -6.9107 0.0014 13 1 3.4160 -7.3015 -0.5863 14 6 5.5693 -7.3795 -0.6088 15 6 5.6051 -8.9092 -0.6393 16 6 5.5156 -9.4468 0.7924 17 1 6.4041 -9.1506 1.3501 18 6 5.4144 -10.9732 0.7617 19 7 4.3203 -8.8839 1.4350 20 6 3.3901 -9.7029 2.0174 21 1 3.2350 -10.7011 1.6355 22 6 2.6468 -9.2502 3.0988 23 7 3.0290 -8.1762 3.7567 24 14 1.1038 -10.1650 3.6200 25 1 1.4556 -11.5606 3.9858 26 1 0.4965 -9.4839 4.7916 27 1 0.1325 -10.1774 2.4970 28 6 4.1417 -7.4256 1.4404 29 6 1.8019 -2.5350 0.0020 30 6 2.2210 -1.2202 0.0010 31 1 -0.3634 0.0002 1.0276 32 1 -0.3634 0.8899 -0.5141 33 1 -0.3633 -0.8901 -0.5136 34 1 1.6602 2.1113 0.0004 35 1 4.1459 2.0888 -0.0010 36 1 5.3527 -0.0025 -0.0014 37 1 5.0871 -2.7831 0.0118 38 1 5.0241 -4.9349 0.0012 39 1 6.3987 -7.0089 -0.0064 40 1 5.6576 -6.9939 -1.6244 41 1 6.5375 -9.2423 -1.0954 42 1 4.7618 -9.2813 -1.2210 43 1 6.2999 -11.3864 0.2787 44 1 5.3458 -11.3533 1.7809 45 1 4.5255 -11.2672 0.2036 46 1 2.5098 -7.8600 4.5126 47 1 4.9180 -6.9645 2.0510 48 1 3.1613 -7.1769 1.8469 49 1 0.7800 -2.8846 0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071987918.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:39 Heat of formation + Delta-G solvation = 31.662342 kcal Electronic energy + Delta-G solvation = -29598.685358 eV Core-core repulsion = 25718.979090 eV Total energy + Delta-G solvation = -3879.706268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.23259 -40.77749 -39.18115 -37.55593 -35.98841 -35.03900 -34.64504 -32.50906 -31.77168 -31.10659 -29.48474 -27.84167 -27.69774 -26.79625 -24.74026 -23.89512 -22.97031 -22.55699 -21.96380 -21.21061 -20.55694 -18.77431 -18.33795 -17.93167 -17.37629 -16.83897 -16.63978 -16.54308 -16.15197 -15.86523 -15.50781 -15.37974 -15.07379 -14.97219 -14.82291 -14.47068 -14.28826 -14.14949 -14.07405 -13.70278 -13.49063 -13.14913 -13.06303 -12.76310 -12.69695 -12.58344 -12.55957 -12.35456 -12.29346 -12.13790 -12.04638 -11.98116 -11.65498 -11.42410 -11.13991 -11.11446 -10.95731 -10.52800 -10.10705 -9.54338 -8.60721 -8.31721 -7.84829 -5.31211 -0.19659 0.36363 1.09503 1.39323 1.46086 1.49672 1.68627 2.24257 2.50427 2.51484 2.56934 3.31702 3.49709 3.66895 3.77066 3.85001 3.99364 4.02032 4.10313 4.11062 4.17128 4.27324 4.40153 4.42724 4.48086 4.63270 4.72600 4.73830 4.76015 4.81278 4.83405 4.90870 4.94248 5.02129 5.07958 5.12247 5.20038 5.23425 5.31377 5.33219 5.37584 5.46988 5.50392 5.56293 5.62406 5.63598 5.70998 5.81743 5.87955 6.30844 6.42076 6.68984 7.16328 7.36673 7.91073 8.40370 9.20049 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.002819 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.725991 B = 9929.621741 C =11272.837867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 C -0.129 4.129 4 C -0.127 4.127 5 C 0.020 3.980 6 N -0.338 5.338 7 C 0.003 3.997 8 C -0.193 4.193 9 C 0.577 3.423 10 O -0.593 6.593 11 N -0.701 5.701 12 C 0.132 3.868 13 H 0.048 0.952 14 C -0.106 4.106 15 C -0.118 4.118 16 C 0.153 3.847 17 H 0.023 0.977 18 C -0.129 4.129 19 N -0.603 5.603 20 C -0.252 4.252 21 H 0.074 0.926 22 C -0.054 4.054 23 N -0.933 5.933 24 Si 0.956 3.044 25 H -0.266 1.266 26 H -0.297 1.297 27 H -0.287 1.287 28 C 0.182 3.818 29 C -0.176 4.176 30 C 0.024 3.976 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.162 0.838 35 H 0.186 0.814 36 H 0.199 0.801 37 H 0.214 0.786 38 H 0.412 0.588 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.037 0.963 45 H 0.044 0.956 46 H 0.244 0.756 47 H -0.001 1.001 48 H 0.037 0.963 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 21.559 -11.848 25.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.072 4.072 3 C -0.149 4.149 4 C -0.146 4.146 5 C -0.096 4.096 6 N -0.001 5.001 7 C -0.131 4.131 8 C -0.200 4.200 9 C 0.366 3.634 10 O -0.474 6.474 11 N -0.352 5.352 12 C 0.026 3.974 13 H 0.066 0.934 14 C -0.144 4.144 15 C -0.158 4.158 16 C 0.048 3.952 17 H 0.041 0.959 18 C -0.187 4.187 19 N -0.327 5.327 20 C -0.382 4.382 21 H 0.092 0.908 22 C -0.249 4.249 23 N -0.580 5.580 24 Si 0.785 3.215 25 H -0.191 1.191 26 H -0.223 1.223 27 H -0.214 1.214 28 C 0.054 3.946 29 C -0.200 4.200 30 C -0.081 4.081 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.180 0.820 35 H 0.203 0.797 36 H 0.216 0.784 37 H 0.231 0.769 38 H 0.249 0.751 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.017 0.983 48 H 0.055 0.945 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.312 21.291 -11.712 25.376 hybrid contribution -1.083 -0.573 0.969 1.563 sum 6.228 20.718 -10.743 24.154 Atomic orbital electron populations 1.20763 0.88830 1.03876 1.03226 1.19668 0.97467 0.89936 1.00105 1.21298 0.94588 0.98062 1.00916 1.21262 0.94559 0.98304 1.00464 1.22450 1.00271 0.82080 1.04838 1.41479 1.06823 1.06226 1.45581 1.22430 0.99883 0.80236 1.10534 1.19567 0.95111 0.91363 1.13990 1.17947 0.83485 0.86951 0.75061 1.90764 1.35366 1.68877 1.52421 1.45672 1.07923 1.07171 1.74397 1.21526 0.99086 0.78653 0.98176 0.93387 1.21647 0.94736 0.96755 1.01253 1.21963 1.02388 0.94515 0.96895 1.20817 0.88191 0.93775 0.92420 0.95895 1.21731 1.01305 0.94745 1.00882 1.44304 1.21698 1.01488 1.65226 1.19434 1.13185 0.98188 1.07412 0.90815 1.25822 1.03101 0.99384 0.96628 1.70159 1.39502 1.27277 1.21012 0.85500 0.80514 0.78661 0.76840 1.19075 1.22330 1.21376 1.20727 0.98575 0.83613 0.91637 1.21056 0.98343 0.90458 1.10133 1.18825 0.82969 0.94828 1.11517 0.90393 0.88454 0.92274 0.81999 0.79714 0.78431 0.76945 0.75125 0.90522 0.89556 0.88375 0.93088 0.90140 0.94376 0.93647 0.94745 0.98294 0.94477 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 9.91 71.23 0.71 -1.10 16 2 C -0.07 -1.41 5.90 -19.67 -0.12 -1.53 16 3 C -0.13 -1.71 9.72 22.32 0.22 -1.49 16 4 C -0.13 -1.29 9.97 22.05 0.22 -1.07 16 5 C 0.02 0.26 10.89 82.97 0.90 1.17 16 6 N -0.34 -7.40 2.92 -345.07 -1.01 -8.41 16 7 C 0.00 0.07 11.09 84.14 0.93 1.00 16 8 C -0.19 -6.50 6.12 -20.15 -0.12 -6.62 16 9 C 0.58 23.89 7.78 86.69 0.67 24.56 16 10 O -0.59 -31.45 16.58 -4.01 -0.07 -31.52 16 11 N -0.70 -24.63 5.07 -445.38 -2.26 -26.89 16 12 C 0.13 5.42 2.60 45.07 0.12 5.54 16 13 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 14 C -0.11 -3.21 5.35 30.62 0.16 -3.04 16 15 C -0.12 -3.76 5.37 30.67 0.16 -3.60 16 16 C 0.15 6.22 3.49 44.98 0.16 6.38 16 17 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 18 C -0.13 -4.75 7.95 71.98 0.57 -4.18 16 19 N -0.60 -31.57 2.99 -675.22 -2.02 -33.59 16 20 C -0.25 -14.58 8.58 84.03 0.72 -13.86 16 21 H 0.07 4.10 6.24 -2.91 -0.02 4.08 16 22 C -0.05 -3.29 4.94 84.86 0.42 -2.87 16 23 N -0.93 -60.00 11.23 21.65 0.24 -59.75 16 24 Si 0.96 49.22 29.58 68.60 2.03 51.24 16 25 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 27 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 28 C 0.18 9.51 4.86 86.36 0.42 9.93 16 29 C -0.18 -5.90 10.27 22.94 0.24 -5.67 16 30 C 0.02 0.64 6.60 38.90 0.26 0.89 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.04 8.09 -2.38 -0.02 1.02 16 33 H 0.06 1.13 7.70 -2.39 -0.02 1.11 16 34 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 36 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16 37 H 0.21 3.07 7.42 -2.91 -0.02 3.05 16 38 H 0.41 10.44 7.50 -92.71 -0.70 9.74 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.04 1.55 7.66 -2.39 -0.02 1.53 16 45 H 0.04 1.72 7.42 -2.39 -0.02 1.70 16 46 H 0.24 15.43 8.31 -92.70 -0.77 14.66 16 47 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 48 H 0.04 2.35 6.15 -2.38 -0.01 2.34 16 49 H 0.13 4.74 7.93 -2.91 -0.02 4.72 16 Total: -1.00 -87.94 392.40 3.83 -84.11 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.26 Total: 20.35 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 6.64 Total: 4.46 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -5.04 Total: -128.65 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.07 Total: -31.52 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.03 Total: 51.24 kcal Total: -87.94 3.83 -84.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071987918.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.773 kcal (2) G-P(sol) polarization free energy of solvation -87.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds