Wall clock time and date at job start Wed Apr 1 2020 00:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35740 * 120.33675 * 2 1 4 4 C 1.40830 * 119.72029 * 179.97438 * 3 2 1 5 5 C 1.34535 * 120.58357 * 359.97438 * 4 3 2 6 6 N 1.37431 * 120.74327 * 0.02562 * 5 4 3 7 7 C 1.35133 * 131.28629 * 180.02562 * 6 5 4 8 8 C 1.38051 * 108.77214 * 179.97438 * 7 6 5 9 9 C 1.47503 * 126.37006 * 179.97438 * 8 7 6 10 10 O 1.21605 * 119.99509 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00026 * 0.02562 * 9 8 7 12 12 C 1.46502 * 119.99692 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.52432 * 35.07798 * 12 11 9 14 14 C 1.53349 * 109.47381 * 155.37906 * 12 11 9 15 15 C 1.53037 * 109.60802 * 58.54343 * 14 12 11 16 16 C 1.53194 * 109.31205 * 61.37779 * 15 14 12 17 17 H 1.09000 * 109.58985 * 65.14999 * 16 15 14 18 18 C 1.53001 * 109.58737 * 185.57679 * 16 15 14 19 19 N 1.46928 * 108.77288 * 305.36417 * 16 15 14 20 20 C 1.36936 * 120.62623 * 233.58539 * 19 16 15 21 21 H 1.08003 * 120.00492 * 29.07609 * 20 19 16 22 22 C 1.38815 * 119.99867 * 209.07273 * 20 19 16 23 23 N 1.31620 * 120.00010 * 15.03971 * 22 20 19 24 24 Si 1.86798 * 120.00070 * 195.03905 * 22 20 19 25 25 H 1.48501 * 109.47164 * 90.00023 * 24 22 20 26 26 H 1.48499 * 109.46965 * 210.00292 * 24 22 20 27 27 H 1.48503 * 109.46892 * 329.99816 * 24 22 20 28 28 C 1.46920 * 118.73853 * 53.60956 * 19 16 15 29 29 C 1.41198 * 107.25526 * 0.22540 * 8 7 6 30 30 C 1.37950 * 119.81314 * 359.97438 * 6 5 4 31 31 H 1.08997 * 109.46811 * 270.02773 * 1 2 3 32 32 H 1.09005 * 109.46852 * 30.02077 * 1 2 3 33 33 H 1.08994 * 109.47169 * 150.02317 * 1 2 3 34 34 H 1.08002 * 120.13810 * 359.95155 * 3 2 1 35 35 H 1.08006 * 119.70794 * 179.97438 * 4 3 2 36 36 H 1.08000 * 119.62678 * 180.02562 * 5 4 3 37 37 H 1.08001 * 125.60872 * 0.02562 * 7 6 5 38 38 H 0.96995 * 120.00027 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.41411 * 298.50828 * 14 12 11 40 40 H 1.09001 * 109.42453 * 178.58549 * 14 12 11 41 41 H 1.09002 * 109.50315 * 301.42336 * 15 14 12 42 42 H 1.09008 * 109.52562 * 181.34057 * 15 14 12 43 43 H 1.08997 * 109.46874 * 179.29107 * 18 16 15 44 44 H 1.09009 * 109.47020 * 299.28577 * 18 16 15 45 45 H 1.08999 * 109.47431 * 59.28694 * 18 16 15 46 46 H 0.96996 * 120.00153 * 179.97438 * 23 22 20 47 47 H 1.08995 * 109.58805 * 66.18107 * 28 19 16 48 48 H 1.09002 * 109.58633 * 186.46113 * 28 19 16 49 49 H 1.08006 * 126.56723 * 179.75311 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6008 1.1564 0.0005 5 6 4.2728 -0.0091 0.0016 6 7 3.6005 -1.2077 0.0016 7 6 4.0499 -2.4821 0.0030 8 6 2.9649 -3.3358 0.0029 9 6 3.0119 -4.8101 0.0036 10 8 1.9787 -5.4513 0.0029 11 7 4.2000 -5.4464 0.0050 12 6 4.2466 -6.9107 0.0051 13 1 3.4185 -7.3016 -0.5862 14 6 5.5772 -7.3799 -0.5957 15 6 6.7391 -6.8045 0.2173 16 6 6.6526 -7.3180 1.6580 17 1 6.8012 -8.3978 1.6706 18 6 7.7272 -6.6395 2.5098 19 7 5.3231 -6.9976 2.1952 20 6 5.1935 -6.3133 3.3743 21 1 5.9588 -5.6156 3.6807 22 6 4.0784 -6.5164 4.1756 23 7 3.3010 -7.5584 3.9698 24 14 3.6810 -5.3109 5.5461 25 1 2.7999 -4.2371 5.0209 26 1 2.9879 -6.0253 6.6482 27 1 4.9395 -4.7121 6.0589 28 6 4.1355 -7.4256 1.4436 29 6 1.8020 -2.5351 -0.0039 30 6 2.2210 -1.2203 0.0011 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8899 -0.5142 33 1 -0.3633 -0.8901 -0.5134 34 1 1.6604 2.1113 -0.0008 35 1 4.1461 2.0887 0.0001 36 1 5.3528 -0.0027 0.0024 37 1 5.0871 -2.7832 0.0048 38 1 5.0241 -4.9349 0.0051 39 1 5.6503 -7.0357 -1.6274 40 1 5.6216 -8.4687 -0.5722 41 1 6.6810 -5.7160 0.2149 42 1 7.6843 -7.1193 -0.2250 43 1 7.6558 -6.9968 3.5371 44 1 8.7126 -6.8785 2.1096 45 1 7.5789 -5.5598 2.4895 46 1 2.5220 -7.7005 4.5300 47 1 4.0788 -8.5141 1.4388 48 1 3.2401 -7.0152 1.9104 49 1 0.7801 -2.8846 -0.0095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071987919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:46 Heat of formation + Delta-G solvation = 55.938246 kcal Electronic energy + Delta-G solvation = -30581.152770 eV Core-core repulsion = 26702.499185 eV Total energy + Delta-G solvation = -3878.653586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.18250 -39.24580 -37.51803 -36.51873 -34.17135 -33.96378 -32.67440 -31.05350 -30.05388 -29.76734 -28.36647 -26.98352 -26.17519 -24.95766 -23.57827 -22.11188 -21.97191 -21.55343 -20.44018 -19.63872 -18.66188 -17.76019 -16.89270 -16.17651 -16.05253 -15.51695 -15.35541 -15.11653 -14.72510 -14.24138 -14.09768 -13.84932 -13.77116 -13.52671 -13.38257 -13.25951 -13.01831 -12.80962 -12.73404 -12.46060 -12.04888 -11.87889 -11.75446 -11.58906 -11.18980 -11.14548 -11.12528 -10.88890 -10.83116 -10.66487 -10.34086 -10.28430 -10.13449 -9.91136 -9.50300 -9.40856 -9.27183 -8.50134 -8.37971 -8.18423 -7.33676 -6.53931 -5.68199 -3.12528 0.71622 1.34552 2.38633 2.67698 3.41321 3.43242 3.48870 3.51570 3.85228 4.12369 4.38868 4.55914 4.60080 4.70262 4.85697 4.98934 5.14415 5.35570 5.36569 5.40953 5.44325 5.46982 5.47500 5.55695 5.60128 5.65184 5.80748 5.85627 5.95062 6.04284 6.06210 6.15327 6.19952 6.30247 6.35511 6.37269 6.39302 6.47936 6.58242 6.64991 6.76098 6.79762 6.87942 6.97879 7.08333 7.17172 7.25949 7.48948 7.79261 7.90081 8.26158 8.56009 8.96629 9.30208 9.94816 10.50481 11.39530 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.003870 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.143350 B = 7233.537444 C = 7934.171128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.036 4.036 3 C -0.149 4.149 4 C -0.134 4.134 5 C 0.035 3.965 6 N -0.338 5.338 7 C -0.009 4.009 8 C -0.153 4.153 9 C 0.584 3.416 10 O -0.544 6.544 11 N -0.696 5.696 12 C 0.119 3.881 13 H 0.076 0.924 14 C -0.118 4.118 15 C -0.130 4.130 16 C 0.165 3.835 17 H 0.024 0.976 18 C -0.135 4.135 19 N -0.582 5.582 20 C -0.249 4.249 21 H 0.067 0.933 22 C 0.008 3.992 23 N -0.898 5.898 24 Si 0.894 3.106 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.161 3.839 29 C -0.133 4.133 30 C 0.022 3.978 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.175 0.825 38 H 0.392 0.608 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.050 0.950 46 H 0.253 0.747 47 H 0.024 0.976 48 H 0.098 0.902 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 15.003 -11.527 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.037 4.037 3 C -0.169 4.169 4 C -0.154 4.154 5 C -0.083 4.083 6 N -0.001 5.001 7 C -0.143 4.143 8 C -0.160 4.160 9 C 0.371 3.629 10 O -0.423 6.423 11 N -0.346 5.346 12 C 0.014 3.986 13 H 0.094 0.906 14 C -0.156 4.156 15 C -0.169 4.169 16 C 0.058 3.942 17 H 0.042 0.958 18 C -0.193 4.193 19 N -0.305 5.305 20 C -0.379 4.379 21 H 0.084 0.916 22 C -0.191 4.191 23 N -0.542 5.542 24 Si 0.724 3.276 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.034 3.966 29 C -0.157 4.157 30 C -0.082 4.082 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.177 0.823 37 H 0.192 0.808 38 H 0.226 0.774 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.042 0.958 48 H 0.116 0.884 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.275 14.611 -11.407 18.675 hybrid contribution 0.349 0.898 0.912 1.327 sum 2.624 15.509 -10.495 18.909 Atomic orbital electron populations 1.20739 0.89755 1.03299 1.03010 1.19364 0.96399 0.90170 0.97725 1.20744 0.93665 0.97704 1.04824 1.20627 0.94793 0.96914 1.03100 1.21617 0.98312 0.83296 1.05090 1.41225 1.07149 1.05273 1.46499 1.22121 0.99516 0.80467 1.12147 1.19825 0.93044 0.93327 1.09820 1.17275 0.83952 0.85391 0.76330 1.90747 1.33393 1.67324 1.50820 1.45669 1.07299 1.07620 1.73970 1.21828 0.96613 0.79270 1.00937 0.90570 1.21741 0.95051 1.00989 0.97864 1.22062 0.96695 0.99990 0.98160 1.20455 0.87346 0.95837 0.90513 0.95806 1.21792 0.96073 1.00596 1.00795 1.44032 0.98526 1.65451 1.22528 1.19054 1.06347 1.16141 0.96365 0.91560 1.25023 0.99939 0.96564 0.97579 1.69974 1.17173 1.26421 1.40659 0.86425 0.78143 0.81093 0.81911 1.21494 1.21801 1.20656 1.21200 0.92682 0.96026 0.86672 1.21081 0.98866 0.88779 1.06990 1.18603 0.81822 0.94908 1.12864 0.90439 0.91041 0.90733 0.85192 0.83966 0.82321 0.80832 0.77362 0.93078 0.91145 0.92840 0.92945 0.92046 0.94501 0.93073 0.93695 0.95800 0.88368 0.82937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.91 36.01 0.36 -0.67 16 2 C -0.04 -0.42 5.91 -104.32 -0.62 -1.04 16 3 C -0.15 -1.47 9.72 -39.50 -0.38 -1.85 16 4 C -0.13 -1.21 9.97 -39.91 -0.40 -1.61 16 5 C 0.04 0.36 10.89 -16.35 -0.18 0.19 16 6 N -0.34 -4.64 2.92 -60.42 -0.18 -4.82 16 7 C -0.01 -0.13 11.09 -16.17 -0.18 -0.31 16 8 C -0.15 -2.71 6.12 -105.07 -0.64 -3.36 16 9 C 0.58 11.98 7.78 -12.49 -0.10 11.88 16 10 O -0.54 -13.14 16.58 5.27 0.09 -13.05 16 11 N -0.70 -12.93 4.91 -54.58 -0.27 -13.20 16 12 C 0.12 2.33 2.83 -67.65 -0.19 2.14 16 13 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 14 C -0.12 -1.88 5.59 -26.53 -0.15 -2.03 16 15 C -0.13 -2.05 5.21 -26.61 -0.14 -2.19 16 16 C 0.17 3.25 3.50 -67.60 -0.24 3.01 16 17 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 18 C -0.14 -2.43 7.94 37.16 0.30 -2.14 16 19 N -0.58 -13.93 2.91 -164.78 -0.48 -14.41 16 20 C -0.25 -6.65 8.60 -15.06 -0.13 -6.78 16 21 H 0.07 1.73 6.21 -52.48 -0.33 1.40 16 22 C 0.01 0.23 4.96 -17.43 -0.09 0.14 16 23 N -0.90 -26.82 11.14 55.49 0.62 -26.20 16 24 Si 0.89 22.58 29.58 -169.99 -5.03 17.55 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.16 3.90 4.88 -3.71 -0.02 3.88 16 29 C -0.13 -2.22 10.27 -38.55 -0.40 -2.62 16 30 C 0.02 0.32 6.60 -84.00 -0.55 -0.23 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.07 0.70 7.69 -51.93 -0.40 0.30 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 36 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.17 2.03 7.42 -52.49 -0.39 1.64 16 38 H 0.39 6.39 5.67 -40.82 -0.23 6.16 16 39 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.82 6.41 -51.93 -0.33 0.49 16 42 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 43 H 0.06 1.22 7.62 -51.93 -0.40 0.83 16 44 H 0.04 0.55 8.14 -51.92 -0.42 0.12 16 45 H 0.05 0.92 7.45 -51.93 -0.39 0.53 16 46 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.10 2.83 6.06 -51.93 -0.31 2.52 16 49 H 0.15 2.47 7.93 -52.48 -0.42 2.05 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -34.11 388.72 -10.50 -44.61 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.37 Total: 7.23 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.74 Total: -3.59 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.31 Total: -58.62 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.11 -10.50 -44.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071987919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.549 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds