Wall clock time and date at job start Wed Apr 1 2020 00:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35740 * 120.33675 * 2 1 4 4 C 1.40830 * 119.72029 * 179.97438 * 3 2 1 5 5 C 1.34535 * 120.58357 * 359.97438 * 4 3 2 6 6 N 1.37431 * 120.74327 * 0.02562 * 5 4 3 7 7 C 1.35133 * 131.28629 * 180.02562 * 6 5 4 8 8 C 1.38051 * 108.77214 * 179.97438 * 7 6 5 9 9 C 1.47503 * 126.37006 * 179.97438 * 8 7 6 10 10 O 1.21605 * 119.99509 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00026 * 0.02562 * 9 8 7 12 12 C 1.46502 * 119.99692 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.52432 * 35.07798 * 12 11 9 14 14 C 1.53349 * 109.47381 * 155.37906 * 12 11 9 15 15 C 1.53037 * 109.60802 * 58.54343 * 14 12 11 16 16 C 1.53194 * 109.31205 * 61.37779 * 15 14 12 17 17 H 1.09000 * 109.58985 * 65.14999 * 16 15 14 18 18 C 1.53001 * 109.58737 * 185.57679 * 16 15 14 19 19 N 1.46928 * 108.77288 * 305.36417 * 16 15 14 20 20 C 1.36936 * 120.62623 * 233.58539 * 19 16 15 21 21 H 1.08003 * 120.00492 * 29.07609 * 20 19 16 22 22 C 1.38815 * 119.99867 * 209.07273 * 20 19 16 23 23 N 1.31620 * 120.00010 * 15.03971 * 22 20 19 24 24 Si 1.86798 * 120.00070 * 195.03905 * 22 20 19 25 25 H 1.48501 * 109.47164 * 90.00023 * 24 22 20 26 26 H 1.48499 * 109.46965 * 210.00292 * 24 22 20 27 27 H 1.48503 * 109.46892 * 329.99816 * 24 22 20 28 28 C 1.46920 * 118.73853 * 53.60956 * 19 16 15 29 29 C 1.41198 * 107.25526 * 0.22540 * 8 7 6 30 30 C 1.37950 * 119.81314 * 359.97438 * 6 5 4 31 31 H 1.08997 * 109.46811 * 270.02773 * 1 2 3 32 32 H 1.09005 * 109.46852 * 30.02077 * 1 2 3 33 33 H 1.08994 * 109.47169 * 150.02317 * 1 2 3 34 34 H 1.08002 * 120.13810 * 359.95155 * 3 2 1 35 35 H 1.08006 * 119.70794 * 179.97438 * 4 3 2 36 36 H 1.08000 * 119.62678 * 180.02562 * 5 4 3 37 37 H 1.08001 * 125.60872 * 0.02562 * 7 6 5 38 38 H 0.96995 * 120.00027 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.41411 * 298.50828 * 14 12 11 40 40 H 1.09001 * 109.42453 * 178.58549 * 14 12 11 41 41 H 1.09002 * 109.50315 * 301.42336 * 15 14 12 42 42 H 1.09008 * 109.52562 * 181.34057 * 15 14 12 43 43 H 1.08997 * 109.46874 * 179.29107 * 18 16 15 44 44 H 1.09009 * 109.47020 * 299.28577 * 18 16 15 45 45 H 1.08999 * 109.47431 * 59.28694 * 18 16 15 46 46 H 0.96996 * 120.00153 * 179.97438 * 23 22 20 47 47 H 1.08995 * 109.58805 * 66.18107 * 28 19 16 48 48 H 1.09002 * 109.58633 * 186.46113 * 28 19 16 49 49 H 1.08006 * 126.56723 * 179.75311 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6008 1.1564 0.0005 5 6 4.2728 -0.0091 0.0016 6 7 3.6005 -1.2077 0.0016 7 6 4.0499 -2.4821 0.0030 8 6 2.9649 -3.3358 0.0029 9 6 3.0119 -4.8101 0.0036 10 8 1.9787 -5.4513 0.0029 11 7 4.2000 -5.4464 0.0050 12 6 4.2466 -6.9107 0.0051 13 1 3.4185 -7.3016 -0.5862 14 6 5.5772 -7.3799 -0.5957 15 6 6.7391 -6.8045 0.2173 16 6 6.6526 -7.3180 1.6580 17 1 6.8012 -8.3978 1.6706 18 6 7.7272 -6.6395 2.5098 19 7 5.3231 -6.9976 2.1952 20 6 5.1935 -6.3133 3.3743 21 1 5.9588 -5.6156 3.6807 22 6 4.0784 -6.5164 4.1756 23 7 3.3010 -7.5584 3.9698 24 14 3.6810 -5.3109 5.5461 25 1 2.7999 -4.2371 5.0209 26 1 2.9879 -6.0253 6.6482 27 1 4.9395 -4.7121 6.0589 28 6 4.1355 -7.4256 1.4436 29 6 1.8020 -2.5351 -0.0039 30 6 2.2210 -1.2203 0.0011 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8899 -0.5142 33 1 -0.3633 -0.8901 -0.5134 34 1 1.6604 2.1113 -0.0008 35 1 4.1461 2.0887 0.0001 36 1 5.3528 -0.0027 0.0024 37 1 5.0871 -2.7832 0.0048 38 1 5.0241 -4.9349 0.0051 39 1 5.6503 -7.0357 -1.6274 40 1 5.6216 -8.4687 -0.5722 41 1 6.6810 -5.7160 0.2149 42 1 7.6843 -7.1193 -0.2250 43 1 7.6558 -6.9968 3.5371 44 1 8.7126 -6.8785 2.1096 45 1 7.5789 -5.5598 2.4895 46 1 2.5220 -7.7005 4.5300 47 1 4.0788 -8.5141 1.4388 48 1 3.2401 -7.0152 1.9104 49 1 0.7801 -2.8846 -0.0095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071987919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:44 Heat of formation + Delta-G solvation = 35.610508 kcal Electronic energy + Delta-G solvation = -30582.034247 eV Core-core repulsion = 26702.499185 eV Total energy + Delta-G solvation = -3879.535062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.21387 -40.82721 -39.09109 -37.53112 -35.74964 -35.03014 -34.49048 -32.49016 -31.73569 -31.06568 -29.43244 -27.87398 -27.76151 -26.77267 -24.84730 -23.83896 -22.95649 -22.57742 -22.04458 -21.00123 -20.35369 -18.82171 -18.29462 -17.84060 -17.26723 -16.80528 -16.61082 -16.43197 -16.14010 -15.85989 -15.52396 -15.41623 -15.07445 -14.88591 -14.65422 -14.41825 -14.27368 -14.14606 -14.00890 -13.68458 -13.61960 -13.13816 -13.00855 -12.84802 -12.63482 -12.58484 -12.54730 -12.39138 -12.35321 -12.11016 -12.05547 -12.02934 -11.55985 -11.21126 -11.10520 -11.04585 -10.95618 -10.51732 -9.97629 -9.50164 -8.56075 -8.30769 -7.80757 -5.25719 -0.18229 0.37620 1.13495 1.36743 1.41723 1.46891 1.70451 2.37620 2.49465 2.52837 2.65566 3.35479 3.52261 3.65326 3.75895 3.86578 4.01606 4.05052 4.10506 4.12759 4.17869 4.21963 4.44212 4.48770 4.52189 4.67855 4.73105 4.75324 4.78283 4.82360 4.84770 4.94082 4.98853 5.07171 5.12077 5.12719 5.13713 5.23606 5.28752 5.34318 5.37315 5.46819 5.59661 5.64248 5.65490 5.71574 5.77598 5.78439 5.89493 6.31648 6.45650 6.76574 7.19944 7.43247 7.95032 8.45269 9.24258 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010909 B = 0.003870 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.143350 B = 7233.537444 C = 7934.171128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.071 4.071 3 C -0.129 4.129 4 C -0.126 4.126 5 C 0.019 3.981 6 N -0.339 5.339 7 C -0.001 4.001 8 C -0.191 4.191 9 C 0.577 3.423 10 O -0.598 6.598 11 N -0.683 5.683 12 C 0.127 3.873 13 H 0.062 0.938 14 C -0.109 4.109 15 C -0.118 4.118 16 C 0.153 3.847 17 H 0.013 0.987 18 C -0.128 4.128 19 N -0.594 5.594 20 C -0.232 4.232 21 H 0.079 0.921 22 C -0.055 4.055 23 N -0.937 5.937 24 Si 0.946 3.054 25 H -0.303 1.303 26 H -0.300 1.300 27 H -0.258 1.258 28 C 0.171 3.829 29 C -0.177 4.177 30 C 0.024 3.976 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.164 0.836 35 H 0.186 0.814 36 H 0.196 0.804 37 H 0.205 0.795 38 H 0.406 0.594 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.033 0.967 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.241 0.759 47 H -0.004 1.004 48 H 0.045 0.955 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 19.226 -13.047 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.072 4.072 3 C -0.149 4.149 4 C -0.146 4.146 5 C -0.098 4.098 6 N -0.001 5.001 7 C -0.135 4.135 8 C -0.198 4.198 9 C 0.366 3.634 10 O -0.480 6.480 11 N -0.333 5.333 12 C 0.021 3.979 13 H 0.080 0.920 14 C -0.147 4.147 15 C -0.157 4.157 16 C 0.048 3.952 17 H 0.031 0.969 18 C -0.185 4.185 19 N -0.317 5.317 20 C -0.362 4.362 21 H 0.096 0.904 22 C -0.250 4.250 23 N -0.585 5.585 24 Si 0.776 3.224 25 H -0.232 1.232 26 H -0.227 1.227 27 H -0.182 1.182 28 C 0.044 3.956 29 C -0.201 4.201 30 C -0.081 4.081 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.182 0.818 35 H 0.203 0.797 36 H 0.213 0.787 37 H 0.222 0.778 38 H 0.243 0.757 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.014 0.986 48 H 0.063 0.937 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.290 18.866 -12.942 23.728 hybrid contribution -0.817 -0.245 1.346 1.593 sum 5.472 18.621 -11.596 22.609 Atomic orbital electron populations 1.20759 0.88696 1.03982 1.03152 1.19685 0.97541 0.89868 1.00084 1.21302 0.94514 0.98090 1.00982 1.21254 0.94624 0.98170 1.00521 1.22437 1.00238 0.82203 1.04934 1.41459 1.06913 1.06118 1.45636 1.22331 0.99739 0.80454 1.10970 1.19662 0.94957 0.91924 1.13290 1.17830 0.83621 0.86787 0.75168 1.90700 1.35215 1.68777 1.53353 1.45511 1.07437 1.07141 1.73168 1.21562 0.98926 0.79881 0.97522 0.92014 1.21714 0.92352 1.01241 0.99410 1.21959 0.98280 1.00524 0.94941 1.20792 0.85266 0.95741 0.93400 0.96900 1.21721 0.97440 1.00286 0.99062 1.44246 1.00237 1.65267 1.21986 1.19421 1.05445 1.15094 0.96263 0.90395 1.25705 1.00890 0.98135 1.00253 1.70152 1.17712 1.28628 1.41958 0.85561 0.78265 0.78906 0.79633 1.23156 1.22671 1.18193 1.20843 0.91231 0.94117 0.89409 1.21049 0.98295 0.90426 1.10357 1.18856 0.82873 0.94933 1.11465 0.90570 0.88291 0.92139 0.81846 0.79666 0.78712 0.77793 0.75689 0.89581 0.90873 0.91691 0.88922 0.94763 0.90493 0.92839 0.94991 0.98643 0.93657 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 9.91 71.24 0.71 -1.26 16 2 C -0.07 -1.57 5.91 -19.67 -0.12 -1.69 16 3 C -0.13 -1.99 9.72 22.32 0.22 -1.77 16 4 C -0.13 -1.61 9.97 22.06 0.22 -1.39 16 5 C 0.02 0.31 10.89 82.97 0.90 1.21 16 6 N -0.34 -8.64 2.92 -345.08 -1.01 -9.64 16 7 C 0.00 -0.03 11.09 84.14 0.93 0.90 16 8 C -0.19 -7.12 6.12 -20.15 -0.12 -7.24 16 9 C 0.58 25.21 7.78 86.69 0.67 25.88 16 10 O -0.60 -31.70 16.58 -4.05 -0.07 -31.76 16 11 N -0.68 -25.71 4.91 -444.85 -2.18 -27.90 16 12 C 0.13 5.10 2.83 45.17 0.13 5.23 16 13 H 0.06 2.64 7.58 -2.39 -0.02 2.63 16 14 C -0.11 -3.22 5.59 30.72 0.17 -3.04 16 15 C -0.12 -3.27 5.21 30.67 0.16 -3.11 16 16 C 0.15 5.74 3.50 44.98 0.16 5.90 16 17 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 18 C -0.13 -4.22 7.94 71.98 0.57 -3.65 16 19 N -0.59 -28.81 2.91 -675.23 -1.97 -30.78 16 20 C -0.23 -12.50 8.60 84.03 0.72 -11.78 16 21 H 0.08 3.99 6.21 -2.91 -0.02 3.97 16 22 C -0.06 -3.24 4.96 84.86 0.42 -2.82 16 23 N -0.94 -59.68 11.14 21.65 0.24 -59.43 16 24 Si 0.95 48.09 29.58 68.60 2.03 50.12 16 25 H -0.30 -16.02 7.11 99.48 0.71 -15.31 16 26 H -0.30 -15.47 7.11 99.48 0.71 -14.77 16 27 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 28 C 0.17 8.78 4.88 86.36 0.42 9.20 16 29 C -0.18 -6.43 10.27 22.94 0.24 -6.20 16 30 C 0.02 0.71 6.60 38.90 0.26 0.97 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.17 8.09 -2.38 -0.02 1.15 16 33 H 0.06 1.23 7.69 -2.39 -0.02 1.21 16 34 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 35 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.21 4.17 7.42 -2.91 -0.02 4.15 16 38 H 0.41 12.60 5.67 -92.71 -0.53 12.08 16 39 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.06 1.69 6.41 -2.39 -0.02 1.67 16 42 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.03 1.30 7.62 -2.39 -0.02 1.28 16 44 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.05 1.73 7.45 -2.39 -0.02 1.72 16 46 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 47 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 48 H 0.04 2.82 6.06 -2.39 -0.01 2.81 16 49 H 0.14 5.07 7.93 -2.91 -0.02 5.05 16 Total: -1.00 -83.89 388.72 4.14 -79.75 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.43 Total: 24.29 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 6.66 Total: 5.35 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -4.91 Total: -127.75 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.07 Total: -31.76 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -83.89 4.14 -79.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071987919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.364 kcal (2) G-P(sol) polarization free energy of solvation -83.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds