Wall clock time and date at job start Wed Apr 1 2020 00:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47542 * 2 1 4 4 C 1.37808 * 120.03355 * 264.98381 * 3 2 1 5 5 C 1.38712 * 120.63230 * 180.02562 * 4 3 2 6 6 C 1.37794 * 120.30214 * 0.02562 * 5 4 3 7 7 C 1.39237 * 119.67087 * 359.97438 * 6 5 4 8 8 C 1.47446 * 134.01048 * 180.02562 * 7 6 5 9 9 C 1.46912 * 126.77115 * 359.97438 * 8 7 6 10 10 O 1.21670 * 119.99755 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00153 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99572 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.78242 * 31.76274 * 12 11 9 14 14 C 1.54327 * 110.84789 * 268.69019 * 12 11 9 15 15 N 1.47032 * 107.26586 * 219.67541 * 14 12 11 16 16 C 1.36931 * 125.64719 * 178.85180 * 15 14 12 17 17 H 1.08002 * 120.00103 * 179.69760 * 16 15 14 18 18 C 1.38812 * 120.00429 * 359.69263 * 16 15 14 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00542 * 20 18 16 23 23 H 1.48504 * 109.46636 * 60.00101 * 20 18 16 24 24 C 1.47428 * 108.70123 * 358.58848 * 15 14 12 25 25 C 1.54912 * 104.83095 * 24.35753 * 24 15 14 26 26 H 1.08993 * 111.01019 * 81.06270 * 25 24 15 27 27 C 1.52998 * 110.99964 * 204.91758 * 25 24 15 28 28 C 1.36368 * 106.46207 * 180.24825 * 8 7 6 29 29 N 1.35472 * 109.78022 * 359.60102 * 28 8 7 30 30 H 0.97002 * 124.79084 * 180.19166 * 29 28 8 31 31 C 1.37966 * 110.42536 * 0.41763 * 29 28 8 32 32 H 1.09004 * 109.46892 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47160 * 299.99657 * 1 2 3 34 34 H 1.08996 * 109.47177 * 60.00413 * 1 2 3 35 35 H 1.09006 * 109.46929 * 239.99758 * 2 1 3 36 36 H 1.09004 * 109.47502 * 120.00366 * 2 1 3 37 37 H 1.07996 * 119.68720 * 359.97438 * 4 3 2 38 38 H 1.08003 * 119.85184 * 179.97438 * 5 4 3 39 39 H 1.08000 * 120.16549 * 180.02562 * 6 5 4 40 40 H 0.96997 * 119.99554 * 359.97438 * 11 9 8 41 41 H 1.09006 * 109.99153 * 100.20658 * 14 12 11 42 42 H 1.08994 * 109.78600 * 339.03309 * 14 12 11 43 43 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 44 44 H 1.08997 * 110.36556 * 143.19064 * 24 15 14 45 45 H 1.08991 * 110.36533 * 265.40365 * 24 15 14 46 46 H 1.09001 * 109.47544 * 58.54332 * 27 25 24 47 47 H 1.09005 * 109.46735 * 178.54473 * 27 25 24 48 48 H 1.09002 * 109.47189 * 298.54218 * 27 25 24 49 49 H 1.08008 * 125.11198 * 179.76408 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3607 2.0362 -1.1885 5 6 2.8249 3.3433 -1.2029 6 6 2.9643 4.0446 -0.0250 7 6 2.6363 3.4349 1.1831 8 6 2.6603 3.8722 2.5910 9 6 3.0793 5.1864 3.0967 10 8 3.4553 6.0450 2.3210 11 7 3.0460 5.4413 4.4198 12 6 3.4632 6.7521 4.9238 13 1 3.2368 7.5348 4.1999 14 6 4.9672 6.7540 5.2701 15 7 5.1286 7.5283 6.5095 16 6 6.3109 7.7494 7.1641 17 1 6.3251 8.3385 8.0692 18 6 7.4911 7.2163 6.6645 19 7 7.4739 6.4986 5.5612 20 14 9.1040 7.5184 7.5571 21 1 10.2081 6.8473 6.8252 22 1 9.3685 8.9782 7.6209 23 1 9.0176 6.9704 8.9346 24 6 3.8078 8.0326 6.9273 25 6 2.7899 7.0550 6.2886 26 1 2.6915 6.1483 6.8854 27 6 1.4309 7.7296 6.0918 28 6 2.2229 2.8142 3.3318 29 7 1.9250 1.7749 2.5155 30 1 1.5923 0.9141 2.8143 31 6 2.1664 2.1117 1.1995 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 2.2565 1.4955 -2.1175 38 1 3.0789 3.8133 -2.1415 39 1 3.3255 5.0623 -0.0388 40 1 2.7451 4.7571 5.0380 41 1 5.5344 7.2210 4.4648 42 1 5.3116 5.7315 5.4243 43 1 8.2987 6.1264 5.2119 44 1 3.7210 8.0142 8.0137 45 1 3.6518 9.0440 6.5521 46 1 1.5496 8.6077 5.4570 47 1 0.7428 7.0293 5.6183 48 1 1.0320 8.0325 7.0599 49 1 2.1259 2.8067 4.4075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080999805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:24 Heat of formation + Delta-G solvation = 36.123189 kcal Electronic energy + Delta-G solvation = -29410.030871 eV Core-core repulsion = 25530.518041 eV Total energy + Delta-G solvation = -3879.512831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.55085 -39.14346 -37.45695 -37.14773 -34.45400 -33.77720 -32.58116 -30.95446 -30.32124 -29.35637 -28.90416 -27.43036 -25.58181 -24.21909 -23.86701 -22.60663 -21.88790 -21.63824 -20.20217 -19.85749 -18.89932 -17.99502 -16.85105 -16.47911 -16.05465 -15.64814 -15.40264 -14.96345 -14.89134 -14.80449 -14.20901 -13.90455 -13.81561 -13.63088 -13.49269 -13.02476 -12.96723 -12.81457 -12.64913 -12.57986 -12.18122 -11.88237 -11.75886 -11.63812 -11.55998 -11.29828 -11.26152 -10.96687 -10.85551 -10.72800 -10.55429 -10.36476 -9.92589 -9.89651 -9.65083 -9.57571 -9.40965 -8.56647 -8.37503 -8.35022 -7.71685 -6.78048 -5.63601 -2.99125 0.94711 1.52887 2.07863 2.87093 3.43948 3.48062 3.50135 3.60450 3.67458 4.02548 4.46977 4.54437 4.56572 4.67274 4.83268 4.99121 5.02210 5.08061 5.14302 5.24467 5.36599 5.38241 5.45667 5.50132 5.55392 5.58981 5.61751 5.64912 5.81095 5.83212 5.85114 6.04846 6.06180 6.08125 6.20978 6.28416 6.40113 6.40885 6.46577 6.55307 6.60961 6.66952 6.68953 6.87534 7.01800 7.05392 7.25521 7.62856 7.68007 7.91714 8.06424 8.31685 8.78102 9.27039 9.87759 10.53088 11.46609 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.002617 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.414721 B =10698.331784 C =11501.482079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.096 4.096 4 C -0.101 4.101 5 C -0.142 4.142 6 C -0.062 4.062 7 C -0.060 4.060 8 C -0.213 4.213 9 C 0.586 3.414 10 O -0.540 6.540 11 N -0.711 5.711 12 C 0.123 3.877 13 H 0.089 0.911 14 C 0.173 3.827 15 N -0.606 5.606 16 C -0.231 4.231 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.918 5.918 20 Si 0.911 3.089 21 H -0.291 1.291 22 H -0.285 1.285 23 H -0.286 1.286 24 C 0.141 3.859 25 C -0.113 4.113 26 H 0.076 0.924 27 C -0.137 4.137 28 C 0.101 3.899 29 N -0.580 5.580 30 H 0.417 0.583 31 C 0.091 3.909 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.135 0.865 40 H 0.391 0.609 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.253 0.747 44 H 0.041 0.959 45 H 0.021 0.979 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.052 0.948 49 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.440 -13.829 -8.665 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.098 4.098 4 C -0.120 4.120 5 C -0.161 4.161 6 C -0.081 4.081 7 C -0.064 4.064 8 C -0.224 4.224 9 C 0.374 3.626 10 O -0.418 6.418 11 N -0.361 5.361 12 C 0.018 3.982 13 H 0.107 0.893 14 C 0.047 3.953 15 N -0.333 5.333 16 C -0.359 4.359 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.212 1.212 23 H -0.212 1.212 24 C 0.014 3.986 25 C -0.133 4.133 26 H 0.094 0.906 27 C -0.194 4.194 28 C -0.031 4.031 29 N -0.181 5.181 30 H 0.254 0.746 31 C -0.014 4.014 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.224 0.776 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.071 0.929 49 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.961 -13.350 -9.210 23.468 hybrid contribution 0.729 -0.660 1.019 1.416 sum -16.233 -14.009 -8.191 22.953 Atomic orbital electron populations 1.21765 0.94867 1.01494 1.02324 1.20444 0.95993 0.92753 1.02666 1.18780 1.04777 0.96028 0.90222 1.20685 0.99886 0.95161 0.96245 1.20949 1.02546 0.94723 0.97919 1.20757 0.96796 1.00410 0.90113 1.18749 1.02605 0.92549 0.92542 1.20201 1.14366 0.95396 0.92469 1.17148 0.77452 0.85835 0.82177 1.90769 1.47569 1.47134 1.56290 1.45723 1.67470 1.16267 1.06610 1.22463 0.97790 0.83739 0.94222 0.89295 1.21486 0.87941 0.97117 0.88735 1.44416 1.01893 1.60527 1.26476 1.18988 0.83565 1.27875 1.05488 0.90445 1.24832 0.97775 1.00128 0.97710 1.69976 1.26174 1.38550 1.21775 0.86211 0.83338 0.77674 0.78586 1.21648 1.21169 1.21249 1.21575 0.85491 0.94488 0.97029 1.22607 0.94663 0.99717 0.96358 0.90601 1.21692 0.96195 1.00409 1.01140 1.22082 0.98110 0.86624 0.96268 1.41447 1.57192 1.14687 1.04783 0.74630 1.18008 1.03947 0.94942 0.84530 0.92481 0.92976 0.92221 0.90671 0.91889 0.85904 0.85824 0.84744 0.77574 0.93497 0.93142 0.93700 0.94083 0.96085 0.92608 0.93168 0.92853 0.80487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.08 -0.58 6.07 -27.89 -0.17 -0.75 16 3 C -0.10 -0.99 5.15 -104.47 -0.54 -1.52 16 4 C -0.10 -1.04 9.64 -39.56 -0.38 -1.42 16 5 C -0.14 -1.68 10.03 -39.57 -0.40 -2.08 16 6 C -0.06 -0.92 9.85 -39.37 -0.39 -1.31 16 7 C -0.06 -0.90 6.27 -104.95 -0.66 -1.56 16 8 C -0.21 -3.20 6.27 -103.31 -0.65 -3.85 16 9 C 0.59 10.69 7.80 -12.75 -0.10 10.59 16 10 O -0.54 -12.03 15.81 5.22 0.08 -11.94 16 11 N -0.71 -11.77 5.10 -53.25 -0.27 -12.04 16 12 C 0.12 2.40 2.78 -66.09 -0.18 2.21 16 13 H 0.09 1.87 7.42 -51.93 -0.39 1.48 16 14 C 0.17 4.37 5.13 -3.06 -0.02 4.36 16 15 N -0.61 -15.74 3.39 -170.06 -0.58 -16.32 16 16 C -0.23 -6.54 10.28 -15.06 -0.15 -6.69 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -27.90 10.31 55.49 0.57 -27.33 16 20 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.14 2.89 6.70 -2.53 -0.02 2.87 16 25 C -0.11 -1.90 3.27 -88.47 -0.29 -2.19 16 26 H 0.08 1.20 8.01 -51.93 -0.42 0.78 16 27 C -0.14 -1.84 9.30 37.16 0.35 -1.50 16 28 C 0.10 1.06 11.33 -16.62 -0.19 0.87 16 29 N -0.58 -5.35 5.99 -10.48 -0.06 -5.42 16 30 H 0.42 2.39 8.96 -40.82 -0.37 2.03 16 31 C 0.09 1.09 6.94 -83.97 -0.58 0.51 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 36 H 0.06 0.41 8.12 -51.93 -0.42 -0.02 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.13 2.16 7.45 -52.49 -0.39 1.77 16 40 H 0.39 5.10 7.44 -40.82 -0.30 4.79 16 41 H 0.05 1.39 7.52 -51.93 -0.39 1.00 16 42 H 0.05 1.40 7.25 -51.93 -0.38 1.02 16 43 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.02 0.44 8.04 -51.93 -0.42 0.02 16 46 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.18 1.20 7.38 -52.48 -0.39 0.81 16 LS Contribution 398.51 15.07 6.01 6.01 Total: -1.00 -36.00 398.51 -10.99 -46.99 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.62 Total: 4.88 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -4.09 Total: -2.35 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -0.34 Total: -61.10 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.00 -10.99 -46.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080999805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.113 kcal (2) G-P(sol) polarization free energy of solvation -36.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds