Wall clock time and date at job start Wed Apr 1 2020 00:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47542 * 2 1 4 4 C 1.37808 * 120.03355 * 264.98381 * 3 2 1 5 5 C 1.38712 * 120.63230 * 180.02562 * 4 3 2 6 6 C 1.37794 * 120.30214 * 0.02562 * 5 4 3 7 7 C 1.39237 * 119.67087 * 359.97438 * 6 5 4 8 8 C 1.47446 * 134.01048 * 180.02562 * 7 6 5 9 9 C 1.46912 * 126.77115 * 359.97438 * 8 7 6 10 10 O 1.21670 * 119.99755 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00153 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99572 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.78242 * 31.76274 * 12 11 9 14 14 C 1.54327 * 110.84789 * 268.69019 * 12 11 9 15 15 N 1.47032 * 107.26586 * 219.67541 * 14 12 11 16 16 C 1.36931 * 125.64719 * 178.85180 * 15 14 12 17 17 H 1.08002 * 120.00103 * 179.69760 * 16 15 14 18 18 C 1.38812 * 120.00429 * 359.69263 * 16 15 14 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00542 * 20 18 16 23 23 H 1.48504 * 109.46636 * 60.00101 * 20 18 16 24 24 C 1.47428 * 108.70123 * 358.58848 * 15 14 12 25 25 C 1.54912 * 104.83095 * 24.35753 * 24 15 14 26 26 H 1.08993 * 111.01019 * 81.06270 * 25 24 15 27 27 C 1.52998 * 110.99964 * 204.91758 * 25 24 15 28 28 C 1.36368 * 106.46207 * 180.24825 * 8 7 6 29 29 N 1.35472 * 109.78022 * 359.60102 * 28 8 7 30 30 H 0.97002 * 124.79084 * 180.19166 * 29 28 8 31 31 C 1.37966 * 110.42536 * 0.41763 * 29 28 8 32 32 H 1.09004 * 109.46892 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47160 * 299.99657 * 1 2 3 34 34 H 1.08996 * 109.47177 * 60.00413 * 1 2 3 35 35 H 1.09006 * 109.46929 * 239.99758 * 2 1 3 36 36 H 1.09004 * 109.47502 * 120.00366 * 2 1 3 37 37 H 1.07996 * 119.68720 * 359.97438 * 4 3 2 38 38 H 1.08003 * 119.85184 * 179.97438 * 5 4 3 39 39 H 1.08000 * 120.16549 * 180.02562 * 6 5 4 40 40 H 0.96997 * 119.99554 * 359.97438 * 11 9 8 41 41 H 1.09006 * 109.99153 * 100.20658 * 14 12 11 42 42 H 1.08994 * 109.78600 * 339.03309 * 14 12 11 43 43 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 44 44 H 1.08997 * 110.36556 * 143.19064 * 24 15 14 45 45 H 1.08991 * 110.36533 * 265.40365 * 24 15 14 46 46 H 1.09001 * 109.47544 * 58.54332 * 27 25 24 47 47 H 1.09005 * 109.46735 * 178.54473 * 27 25 24 48 48 H 1.09002 * 109.47189 * 298.54218 * 27 25 24 49 49 H 1.08008 * 125.11198 * 179.76408 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3607 2.0362 -1.1885 5 6 2.8249 3.3433 -1.2029 6 6 2.9643 4.0446 -0.0250 7 6 2.6363 3.4349 1.1831 8 6 2.6603 3.8722 2.5910 9 6 3.0793 5.1864 3.0967 10 8 3.4553 6.0450 2.3210 11 7 3.0460 5.4413 4.4198 12 6 3.4632 6.7521 4.9238 13 1 3.2368 7.5348 4.1999 14 6 4.9672 6.7540 5.2701 15 7 5.1286 7.5283 6.5095 16 6 6.3109 7.7494 7.1641 17 1 6.3251 8.3385 8.0692 18 6 7.4911 7.2163 6.6645 19 7 7.4739 6.4986 5.5612 20 14 9.1040 7.5184 7.5571 21 1 10.2081 6.8473 6.8252 22 1 9.3685 8.9782 7.6209 23 1 9.0176 6.9704 8.9346 24 6 3.8078 8.0326 6.9273 25 6 2.7899 7.0550 6.2886 26 1 2.6915 6.1483 6.8854 27 6 1.4309 7.7296 6.0918 28 6 2.2229 2.8142 3.3318 29 7 1.9250 1.7749 2.5155 30 1 1.5923 0.9141 2.8143 31 6 2.1664 2.1117 1.1995 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 2.2565 1.4955 -2.1175 38 1 3.0789 3.8133 -2.1415 39 1 3.3255 5.0623 -0.0388 40 1 2.7451 4.7571 5.0380 41 1 5.5344 7.2210 4.4648 42 1 5.3116 5.7315 5.4243 43 1 8.2987 6.1264 5.2119 44 1 3.7210 8.0142 8.0137 45 1 3.6518 9.0440 6.5521 46 1 1.5496 8.6077 5.4570 47 1 0.7428 7.0293 5.6183 48 1 1.0320 8.0325 7.0599 49 1 2.1259 2.8067 4.4075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080999805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:23 Heat of formation + Delta-G solvation = 12.146674 kcal Electronic energy + Delta-G solvation = -29411.070571 eV Core-core repulsion = 25530.518041 eV Total energy + Delta-G solvation = -3880.552531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.48636 -40.64035 -38.95335 -38.17351 -35.58322 -35.18231 -34.26543 -32.19383 -31.86873 -30.36590 -29.84568 -29.02002 -27.34443 -25.54733 -24.87212 -23.95836 -22.79172 -22.54887 -21.81504 -21.51633 -20.20374 -18.90029 -18.86229 -17.64390 -17.30641 -16.93363 -16.78057 -16.35200 -16.02217 -15.65191 -15.57948 -15.26593 -15.16883 -14.82704 -14.68309 -14.44041 -14.12978 -14.07808 -13.69245 -13.63906 -13.52619 -13.31880 -13.03336 -12.86945 -12.84182 -12.56389 -12.55815 -12.40408 -12.24606 -12.02002 -11.84559 -11.81870 -11.68860 -11.63654 -11.44208 -10.89673 -10.73205 -10.56019 -9.94120 -9.27224 -8.92338 -8.66940 -7.83500 -5.22124 0.00545 0.57947 1.03474 1.43544 1.48283 1.54575 2.03863 2.27347 2.47027 2.50584 2.94592 3.34056 3.60349 3.69682 3.76651 3.78661 3.93720 4.03842 4.08837 4.12123 4.15255 4.34050 4.44200 4.50249 4.54752 4.60417 4.62704 4.64589 4.75118 4.78103 4.84672 4.89725 5.05440 5.08011 5.09583 5.12637 5.18549 5.26730 5.32272 5.40554 5.45606 5.50721 5.52005 5.54484 5.64287 5.65097 5.72079 5.82882 6.13385 6.16981 6.54565 6.74401 7.06688 7.42757 7.76429 8.40630 9.25095 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.002617 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.414721 B =10698.331784 C =11501.482079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.084 4.084 4 C -0.108 4.108 5 C -0.135 4.135 6 C -0.108 4.108 7 C -0.091 4.091 8 C -0.273 4.273 9 C 0.582 3.418 10 O -0.598 6.598 11 N -0.697 5.697 12 C 0.138 3.862 13 H 0.068 0.932 14 C 0.189 3.811 15 N -0.628 5.628 16 C -0.242 4.242 17 H 0.089 0.911 18 C -0.072 4.072 19 N -0.953 5.953 20 Si 0.982 3.018 21 H -0.299 1.299 22 H -0.278 1.278 23 H -0.269 1.269 24 C 0.131 3.869 25 C -0.091 4.091 26 H 0.097 0.903 27 C -0.129 4.129 28 C 0.148 3.852 29 N -0.557 5.557 30 H 0.439 0.561 31 C 0.081 3.919 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.156 0.844 38 H 0.139 0.861 39 H 0.099 0.901 40 H 0.412 0.588 41 H -0.016 1.016 42 H 0.019 0.981 43 H 0.243 0.757 44 H 0.058 0.942 45 H 0.022 0.978 46 H 0.045 0.955 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.142 -16.905 -6.928 27.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.086 4.086 4 C -0.127 4.127 5 C -0.154 4.154 6 C -0.127 4.127 7 C -0.095 4.095 8 C -0.283 4.283 9 C 0.373 3.627 10 O -0.480 6.480 11 N -0.348 5.348 12 C 0.032 3.968 13 H 0.086 0.914 14 C 0.062 3.938 15 N -0.354 5.354 16 C -0.370 4.370 17 H 0.107 0.893 18 C -0.265 4.265 19 N -0.602 5.602 20 Si 0.810 3.190 21 H -0.225 1.225 22 H -0.204 1.204 23 H -0.195 1.195 24 C 0.006 3.994 25 C -0.111 4.111 26 H 0.115 0.885 27 C -0.186 4.186 28 C 0.013 3.987 29 N -0.159 5.159 30 H 0.280 0.720 31 C -0.024 4.024 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.173 0.827 38 H 0.157 0.843 39 H 0.117 0.883 40 H 0.249 0.751 41 H 0.002 0.998 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.040 0.960 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -19.735 -16.471 -7.430 26.758 hybrid contribution 1.537 0.264 0.429 1.618 sum -18.198 -16.207 -7.001 25.355 Atomic orbital electron populations 1.21747 0.93973 1.02567 1.01917 1.20541 0.96569 0.90388 1.04142 1.19252 1.02535 0.97463 0.89377 1.21068 0.99323 0.94444 0.97849 1.21196 1.01303 0.95513 0.97404 1.20688 1.00252 0.99768 0.92028 1.19070 1.03433 0.94396 0.92609 1.19976 1.19443 0.95378 0.93530 1.17735 0.76276 0.86692 0.82030 1.90731 1.50302 1.49282 1.57690 1.45460 1.66959 1.15712 1.06649 1.22002 0.94263 0.84947 0.95591 0.91425 1.21104 0.91233 0.94472 0.86945 1.44744 1.03506 1.60698 1.26491 1.19487 0.84744 1.27120 1.05695 0.89277 1.25769 1.01526 1.00512 0.98676 1.70263 1.26232 1.40088 1.23645 0.85101 0.78512 0.77655 0.77769 1.22527 1.20368 1.19502 1.21863 0.83929 0.95281 0.98289 1.22531 0.95180 0.99846 0.93520 0.88452 1.21649 0.94096 1.00193 1.02681 1.22610 0.93428 0.84868 0.97775 1.41434 1.55557 1.15263 1.03662 0.71952 1.18120 1.04297 0.93873 0.86116 0.90662 0.93369 0.92739 0.89173 0.90547 0.82665 0.84303 0.88272 0.75137 0.99818 0.96235 0.94775 0.92349 0.96012 0.93548 0.91179 0.90213 0.75992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.89 71.98 0.71 -0.59 16 2 C -0.08 -0.83 6.07 29.85 0.18 -0.65 16 3 C -0.08 -1.54 5.15 -19.77 -0.10 -1.65 16 4 C -0.11 -2.07 9.64 22.28 0.21 -1.85 16 5 C -0.14 -3.33 10.03 22.28 0.22 -3.11 16 6 C -0.11 -3.56 9.85 22.40 0.22 -3.34 16 7 C -0.09 -2.86 6.27 -20.08 -0.13 -2.99 16 8 C -0.27 -8.39 6.27 -19.02 -0.12 -8.51 16 9 C 0.58 22.66 7.80 86.51 0.67 23.33 16 10 O -0.60 -29.65 15.81 -4.25 -0.07 -29.72 16 11 N -0.70 -23.54 5.10 -440.63 -2.25 -25.79 16 12 C 0.14 5.61 2.78 46.18 0.13 5.74 16 13 H 0.07 3.05 7.42 -2.39 -0.02 3.03 16 14 C 0.19 10.21 5.13 86.73 0.45 10.65 16 15 N -0.63 -33.57 3.39 -691.96 -2.35 -35.92 16 16 C -0.24 -13.96 10.28 84.03 0.86 -13.10 16 17 H 0.09 4.81 7.83 -2.91 -0.02 4.78 16 18 C -0.07 -4.30 5.49 84.86 0.47 -3.84 16 19 N -0.95 -61.36 10.31 21.65 0.22 -61.14 16 20 Si 0.98 47.49 29.55 68.60 2.03 49.52 16 21 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 C 0.13 5.31 6.70 86.86 0.58 5.89 16 25 C -0.09 -2.91 3.27 -9.40 -0.03 -2.94 16 26 H 0.10 2.75 8.01 -2.39 -0.02 2.73 16 27 C -0.13 -3.10 9.30 71.98 0.67 -2.43 16 28 C 0.15 2.74 11.33 83.69 0.95 3.69 16 29 N -0.56 -8.55 5.99 -187.08 -1.12 -9.67 16 30 H 0.44 3.03 8.96 -92.71 -0.83 2.20 16 31 C 0.08 1.83 6.94 38.91 0.27 2.10 16 32 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.09 0.74 8.05 -2.38 -0.02 0.72 16 36 H 0.08 0.64 8.12 -2.38 -0.02 0.62 16 37 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 39 H 0.10 3.80 7.45 -2.91 -0.02 3.78 16 40 H 0.41 10.07 7.44 -92.71 -0.69 9.38 16 41 H -0.02 -1.08 7.52 -2.38 -0.02 -1.10 16 42 H 0.02 1.15 7.25 -2.39 -0.02 1.14 16 43 H 0.24 15.38 8.31 -92.70 -0.77 14.61 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.02 0.89 8.04 -2.39 -0.02 0.87 16 46 H 0.05 1.22 8.11 -2.39 -0.02 1.20 16 47 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 48 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.22 1.93 7.38 -2.91 -0.02 1.91 16 Total: -1.00 -89.15 398.51 2.14 -87.01 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.55 Total: 19.29 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 6.22 Total: 6.42 kcal Atomic # 7 Polarization: -127.03 SS G_CDS: -5.49 Total: -132.52 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.07 Total: -29.72 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -89.15 2.14 -87.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080999805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.155 kcal (2) G-P(sol) polarization free energy of solvation -89.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds