Wall clock time and date at job start Wed Apr 1 2020 00:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35742 * 120.33351 * 2 1 4 4 C 1.40824 * 119.72109 * 179.97438 * 3 2 1 5 5 C 1.34536 * 120.58610 * 0.02918 * 4 3 2 6 6 N 1.37443 * 120.74142 * 359.95239 * 5 4 3 7 7 C 1.35124 * 131.28829 * 180.02562 * 6 5 4 8 8 C 1.38053 * 108.77149 * 180.02562 * 7 6 5 9 9 C 1.47505 * 126.37176 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99734 * 180.02562 * 9 8 7 11 11 N 1.34774 * 119.99838 * 0.02562 * 9 8 7 12 12 C 1.46504 * 119.99618 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46891 * 35.00590 * 12 11 9 14 14 C 1.52997 * 109.47417 * 275.00242 * 12 11 9 15 15 C 1.53002 * 109.46978 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.46891 * 60.00410 * 15 14 12 17 17 C 1.53000 * 109.47328 * 299.99597 * 16 15 14 18 18 C 1.52997 * 109.47060 * 60.00126 * 17 16 15 19 19 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 20 20 N 1.46500 * 109.47473 * 180.02562 * 18 17 16 21 21 C 1.36930 * 119.99841 * 275.00145 * 20 18 17 22 22 H 1.07999 * 120.00622 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99916 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99831 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00233 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47156 * 90.00281 * 25 23 21 27 27 H 1.48502 * 109.47158 * 210.00109 * 25 23 21 28 28 H 1.48496 * 109.47022 * 329.99784 * 25 23 21 29 29 C 1.41193 * 107.25698 * 0.22953 * 8 7 6 30 30 C 1.37946 * 119.80836 * 0.02562 * 6 5 4 31 31 H 1.09000 * 109.46895 * 89.99532 * 1 2 3 32 32 H 1.08994 * 109.46729 * 209.99490 * 1 2 3 33 33 H 1.08994 * 109.47103 * 329.99877 * 1 2 3 34 34 H 1.07995 * 120.14008 * 0.02562 * 3 2 1 35 35 H 1.08008 * 119.71064 * 180.02562 * 4 3 2 36 36 H 1.07995 * 119.63290 * 179.97438 * 5 4 3 37 37 H 1.08002 * 125.60991 * 359.96531 * 7 6 5 38 38 H 0.96997 * 120.00234 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.47045 * 60.00127 * 14 12 11 40 40 H 1.09001 * 109.47375 * 300.00052 * 14 12 11 41 41 H 1.08992 * 109.47056 * 300.00064 * 15 14 12 42 42 H 1.09004 * 109.47006 * 180.02562 * 15 14 12 43 43 H 1.09004 * 109.47368 * 179.97438 * 16 15 14 44 44 H 1.09001 * 109.47372 * 59.99964 * 16 15 14 45 45 H 1.09002 * 109.47398 * 180.02562 * 17 16 15 46 46 H 1.09001 * 109.47194 * 300.00476 * 17 16 15 47 47 H 0.97001 * 119.99547 * 95.00125 * 20 18 17 48 48 H 0.97006 * 120.00314 * 179.97438 * 24 23 21 49 49 H 1.07997 * 126.57215 * 179.77729 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1565 0.0005 5 6 4.2728 -0.0089 0.0005 6 7 3.6005 -1.2077 0.0009 7 6 4.0499 -2.4820 0.0013 8 6 2.9650 -3.3357 0.0010 9 6 3.0120 -4.8100 0.0008 10 8 1.9788 -5.4512 0.0000 11 7 4.2001 -5.4463 0.0014 12 6 4.2468 -6.9106 0.0018 13 1 3.4172 -7.3006 -0.5880 14 6 4.1367 -7.4240 1.4388 15 6 4.1847 -8.9533 1.4390 16 6 5.5077 -9.4220 0.8300 17 6 5.6179 -8.9085 -0.6071 18 6 5.5698 -7.3793 -0.6073 19 1 6.3994 -6.9895 -0.0176 20 7 5.6747 -6.8876 -1.9834 21 6 6.9060 -6.7181 -2.5578 22 1 7.7999 -6.9465 -1.9965 23 6 7.0054 -6.2527 -3.8619 24 7 5.9160 -5.9739 -4.5459 25 14 8.6852 -6.0221 -4.6458 26 1 9.0902 -7.2781 -5.3268 27 1 8.6210 -4.9194 -5.6384 28 1 9.6795 -5.6854 -3.5956 29 6 1.8020 -2.5351 -0.0051 30 6 2.2211 -1.2203 0.0008 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3632 -0.8900 0.5137 33 1 -0.3633 0.8899 0.5138 34 1 1.6603 2.1113 0.0004 35 1 4.1460 2.0889 0.0010 36 1 5.3528 -0.0025 0.0005 37 1 5.0872 -2.7830 0.0010 38 1 5.0243 -4.9348 0.0024 39 1 3.1939 -7.0905 1.8726 40 1 4.9662 -7.0340 2.0286 41 1 3.3550 -9.3429 0.8494 42 1 4.1058 -9.3192 2.4628 43 1 5.5422 -10.5115 0.8305 44 1 6.3375 -9.0323 1.4197 45 1 6.5602 -9.2428 -1.0411 46 1 4.7881 -9.2982 -1.1968 47 1 4.8718 -6.6821 -2.4874 48 1 5.9854 -5.6483 -5.4570 49 1 0.7802 -2.8846 -0.0104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085392093.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:16 Heat of formation + Delta-G solvation = 30.172971 kcal Electronic energy + Delta-G solvation = -29631.933330 eV Core-core repulsion = 25752.162478 eV Total energy + Delta-G solvation = -3879.770852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.23178 -39.49382 -37.74838 -36.58527 -34.17635 -34.00991 -33.61832 -31.13012 -30.62073 -29.32471 -28.40728 -27.49806 -27.00743 -23.96716 -23.63405 -22.03073 -21.98598 -21.18338 -20.95483 -19.83319 -19.12074 -17.79972 -17.11789 -16.81815 -16.15522 -15.59927 -15.55156 -15.28322 -14.82840 -14.37283 -14.27775 -14.05070 -13.75430 -13.64805 -13.47348 -13.38893 -13.23855 -12.93086 -12.89087 -12.56602 -12.18317 -12.07637 -12.02350 -11.80262 -11.61965 -11.19669 -11.06761 -10.91288 -10.78690 -10.72135 -10.53145 -10.29632 -10.18270 -10.15847 -9.73524 -9.61947 -9.48754 -8.90933 -8.62497 -8.36420 -7.37595 -6.97185 -5.76979 -3.06672 0.67883 1.31225 2.27547 2.64122 3.37850 3.40307 3.45507 3.47616 3.66000 3.90403 4.37076 4.55541 4.56629 4.69732 4.82358 4.92866 5.11061 5.12944 5.19794 5.30296 5.33256 5.40363 5.42931 5.49969 5.54820 5.58946 5.73822 5.76835 5.82231 5.87918 5.90122 5.94423 6.00155 6.02803 6.02857 6.15838 6.26269 6.31593 6.38861 6.49564 6.53992 6.57571 6.62631 6.73824 6.83257 6.90331 6.97076 7.14804 7.22264 7.67564 8.06051 8.39979 8.73645 9.51658 10.09240 10.44557 11.44803 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009060 B = 0.003504 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.841026 B = 7989.642360 C =10252.599398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.038 4.038 3 C -0.147 4.147 4 C -0.134 4.134 5 C 0.037 3.963 6 N -0.338 5.338 7 C -0.002 4.002 8 C -0.161 4.161 9 C 0.587 3.413 10 O -0.549 6.549 11 N -0.703 5.703 12 C 0.142 3.858 13 H 0.085 0.915 14 C -0.124 4.124 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.173 3.827 19 H 0.049 0.951 20 N -0.722 5.722 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.928 5.928 25 Si 0.903 3.097 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.283 1.283 29 C -0.133 4.133 30 C 0.022 3.978 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.178 0.822 38 H 0.400 0.600 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 11.082 13.901 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.039 4.039 3 C -0.167 4.167 4 C -0.154 4.154 5 C -0.081 4.081 6 N -0.001 5.001 7 C -0.136 4.136 8 C -0.168 4.168 9 C 0.374 3.626 10 O -0.428 6.428 11 N -0.352 5.352 12 C 0.037 3.963 13 H 0.103 0.897 14 C -0.163 4.163 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.174 4.174 18 C 0.063 3.937 19 H 0.067 0.933 20 N -0.362 5.362 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.576 5.576 25 Si 0.734 3.266 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.209 1.209 29 C -0.157 4.157 30 C -0.082 4.082 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.149 0.851 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.195 0.805 38 H 0.235 0.765 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.199 10.820 13.826 18.618 hybrid contribution 1.367 0.485 -0.889 1.701 sum -4.831 11.305 12.937 17.846 Atomic orbital electron populations 1.20729 0.89737 1.03283 1.02977 1.19356 0.96391 0.90164 0.97991 1.20759 0.93671 0.97739 1.04516 1.20648 0.94793 0.96973 1.02991 1.21665 0.98455 0.83227 1.04790 1.41241 1.07158 1.05340 1.46336 1.22218 0.99733 0.80459 1.11153 1.19713 0.93157 0.92998 1.10936 1.17352 0.83752 0.85610 0.75844 1.90732 1.33436 1.67464 1.51146 1.45734 1.07888 1.07512 1.74030 1.21288 1.00324 0.78943 0.95767 0.89731 1.21876 1.01790 0.95740 0.96894 1.21472 0.98275 0.95181 1.00253 1.21579 0.97035 0.99705 0.97415 1.22219 1.02244 0.98280 0.94662 1.20459 0.93309 0.92127 0.87819 0.93265 1.42422 1.06360 1.78008 1.09432 1.19193 0.85345 1.36887 0.95740 0.91256 1.24729 0.96678 1.02227 0.97034 1.69678 1.26135 1.50923 1.10814 0.86261 0.83815 0.77371 0.79117 1.21768 1.21918 1.20853 1.21040 0.98713 0.88776 1.07205 1.18611 0.81835 0.94922 1.12811 0.90448 0.90791 0.91039 0.85146 0.83880 0.82166 0.80504 0.76535 0.91854 0.92111 0.91944 0.92441 0.92733 0.92439 0.91661 0.92430 0.78059 0.93538 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.91 36.00 0.36 -0.57 16 2 C -0.04 -0.42 5.91 -104.32 -0.62 -1.04 16 3 C -0.15 -1.38 9.72 -39.50 -0.38 -1.76 16 4 C -0.13 -1.19 9.97 -39.91 -0.40 -1.59 16 5 C 0.04 0.38 10.89 -16.34 -0.18 0.20 16 6 N -0.34 -4.51 2.92 -60.42 -0.18 -4.69 16 7 C 0.00 -0.03 11.09 -16.17 -0.18 -0.21 16 8 C -0.16 -2.64 6.12 -105.07 -0.64 -3.29 16 9 C 0.59 10.86 7.78 -12.48 -0.10 10.77 16 10 O -0.55 -11.71 16.58 5.28 0.09 -11.62 16 11 N -0.70 -12.07 4.90 -54.85 -0.27 -12.34 16 12 C 0.14 2.48 1.97 -67.93 -0.13 2.35 16 13 H 0.08 1.70 7.58 -51.93 -0.39 1.30 16 14 C -0.12 -1.82 5.49 -26.73 -0.15 -1.96 16 15 C -0.11 -1.52 5.92 -26.73 -0.16 -1.67 16 16 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 17 C -0.13 -2.33 5.50 -26.73 -0.15 -2.47 16 18 C 0.17 3.29 2.29 -67.93 -0.16 3.13 16 19 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 20 N -0.72 -17.33 4.95 -53.43 -0.26 -17.59 16 21 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 25 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C -0.13 -2.05 10.27 -38.55 -0.40 -2.44 16 30 C 0.02 0.31 6.60 -84.00 -0.55 -0.25 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.62 7.70 -51.93 -0.40 0.22 16 33 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 36 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.18 2.12 7.42 -52.49 -0.39 1.73 16 38 H 0.40 6.40 7.50 -40.82 -0.31 6.09 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.39 10.31 7.80 -40.82 -0.32 10.00 16 48 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.15 2.21 7.94 -52.49 -0.42 1.79 16 LS Contribution 399.76 15.07 6.02 6.02 Total: -1.00 -33.10 399.76 -10.81 -43.92 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -7.68 Total: 15.94 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -4.23 Total: -9.52 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.02 Total: -61.63 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.10 -10.81 -43.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085392093.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.088 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds