Wall clock time and date at job start Wed Apr 1 2020 00:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35742 * 120.33351 * 2 1 4 4 C 1.40824 * 119.72109 * 179.97438 * 3 2 1 5 5 C 1.34536 * 120.58610 * 0.02918 * 4 3 2 6 6 N 1.37443 * 120.74142 * 359.95239 * 5 4 3 7 7 C 1.35124 * 131.28829 * 180.02562 * 6 5 4 8 8 C 1.38053 * 108.77149 * 180.02562 * 7 6 5 9 9 C 1.47505 * 126.37176 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99734 * 180.02562 * 9 8 7 11 11 N 1.34774 * 119.99838 * 0.02562 * 9 8 7 12 12 C 1.46504 * 119.99618 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.46891 * 35.00590 * 12 11 9 14 14 C 1.52997 * 109.47417 * 275.00242 * 12 11 9 15 15 C 1.53002 * 109.46978 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.46891 * 60.00410 * 15 14 12 17 17 C 1.53000 * 109.47328 * 299.99597 * 16 15 14 18 18 C 1.52997 * 109.47060 * 60.00126 * 17 16 15 19 19 H 1.08998 * 109.47533 * 59.99948 * 18 17 16 20 20 N 1.46500 * 109.47473 * 180.02562 * 18 17 16 21 21 C 1.36930 * 119.99841 * 275.00145 * 20 18 17 22 22 H 1.07999 * 120.00622 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99916 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99831 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00233 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47156 * 90.00281 * 25 23 21 27 27 H 1.48502 * 109.47158 * 210.00109 * 25 23 21 28 28 H 1.48496 * 109.47022 * 329.99784 * 25 23 21 29 29 C 1.41193 * 107.25698 * 0.22953 * 8 7 6 30 30 C 1.37946 * 119.80836 * 0.02562 * 6 5 4 31 31 H 1.09000 * 109.46895 * 89.99532 * 1 2 3 32 32 H 1.08994 * 109.46729 * 209.99490 * 1 2 3 33 33 H 1.08994 * 109.47103 * 329.99877 * 1 2 3 34 34 H 1.07995 * 120.14008 * 0.02562 * 3 2 1 35 35 H 1.08008 * 119.71064 * 180.02562 * 4 3 2 36 36 H 1.07995 * 119.63290 * 179.97438 * 5 4 3 37 37 H 1.08002 * 125.60991 * 359.96531 * 7 6 5 38 38 H 0.96997 * 120.00234 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.47045 * 60.00127 * 14 12 11 40 40 H 1.09001 * 109.47375 * 300.00052 * 14 12 11 41 41 H 1.08992 * 109.47056 * 300.00064 * 15 14 12 42 42 H 1.09004 * 109.47006 * 180.02562 * 15 14 12 43 43 H 1.09004 * 109.47368 * 179.97438 * 16 15 14 44 44 H 1.09001 * 109.47372 * 59.99964 * 16 15 14 45 45 H 1.09002 * 109.47398 * 180.02562 * 17 16 15 46 46 H 1.09001 * 109.47194 * 300.00476 * 17 16 15 47 47 H 0.97001 * 119.99547 * 95.00125 * 20 18 17 48 48 H 0.97006 * 120.00314 * 179.97438 * 24 23 21 49 49 H 1.07997 * 126.57215 * 179.77729 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1565 0.0005 5 6 4.2728 -0.0089 0.0005 6 7 3.6005 -1.2077 0.0009 7 6 4.0499 -2.4820 0.0013 8 6 2.9650 -3.3357 0.0010 9 6 3.0120 -4.8100 0.0008 10 8 1.9788 -5.4512 0.0000 11 7 4.2001 -5.4463 0.0014 12 6 4.2468 -6.9106 0.0018 13 1 3.4172 -7.3006 -0.5880 14 6 4.1367 -7.4240 1.4388 15 6 4.1847 -8.9533 1.4390 16 6 5.5077 -9.4220 0.8300 17 6 5.6179 -8.9085 -0.6071 18 6 5.5698 -7.3793 -0.6073 19 1 6.3994 -6.9895 -0.0176 20 7 5.6747 -6.8876 -1.9834 21 6 6.9060 -6.7181 -2.5578 22 1 7.7999 -6.9465 -1.9965 23 6 7.0054 -6.2527 -3.8619 24 7 5.9160 -5.9739 -4.5459 25 14 8.6852 -6.0221 -4.6458 26 1 9.0902 -7.2781 -5.3268 27 1 8.6210 -4.9194 -5.6384 28 1 9.6795 -5.6854 -3.5956 29 6 1.8020 -2.5351 -0.0051 30 6 2.2211 -1.2203 0.0008 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3632 -0.8900 0.5137 33 1 -0.3633 0.8899 0.5138 34 1 1.6603 2.1113 0.0004 35 1 4.1460 2.0889 0.0010 36 1 5.3528 -0.0025 0.0005 37 1 5.0872 -2.7830 0.0010 38 1 5.0243 -4.9348 0.0024 39 1 3.1939 -7.0905 1.8726 40 1 4.9662 -7.0340 2.0286 41 1 3.3550 -9.3429 0.8494 42 1 4.1058 -9.3192 2.4628 43 1 5.5422 -10.5115 0.8305 44 1 6.3375 -9.0323 1.4197 45 1 6.5602 -9.2428 -1.0411 46 1 4.7881 -9.2982 -1.1968 47 1 4.8718 -6.6821 -2.4874 48 1 5.9854 -5.6483 -5.4570 49 1 0.7802 -2.8846 -0.0104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085392093.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:15 Heat of formation + Delta-G solvation = 11.137186 kcal Electronic energy + Delta-G solvation = -29632.758783 eV Core-core repulsion = 25752.162478 eV Total energy + Delta-G solvation = -3880.596305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.22764 -40.92141 -39.13920 -37.53668 -35.80465 -35.09981 -35.02239 -32.98971 -31.67612 -30.52689 -29.64955 -28.94519 -27.79195 -25.68362 -25.00969 -23.16799 -22.96806 -22.50179 -22.20614 -21.19733 -20.44745 -19.19383 -18.69399 -17.93950 -17.39571 -16.73319 -16.67375 -16.58787 -16.20650 -15.76941 -15.65515 -15.30310 -15.10635 -14.92533 -14.69251 -14.60436 -14.34950 -14.13073 -14.00967 -13.69850 -13.58912 -13.51193 -13.13828 -12.92114 -12.80144 -12.57709 -12.35542 -12.23908 -12.16583 -12.07177 -12.02490 -11.98289 -11.64047 -11.42397 -11.17672 -11.10221 -11.02534 -10.79165 -9.99613 -9.52173 -8.98679 -8.31666 -7.89800 -5.19129 -0.19938 0.36502 1.09494 1.47618 1.49449 1.57279 1.69128 2.29548 2.50197 2.57199 2.57935 3.43343 3.51412 3.69330 3.74828 3.81727 3.88958 4.00477 4.08782 4.13563 4.18766 4.27457 4.33470 4.39599 4.45406 4.48265 4.55097 4.61062 4.71301 4.75491 4.79210 4.82506 4.93053 4.97058 5.03164 5.13096 5.18461 5.23377 5.25769 5.31197 5.32138 5.35886 5.45997 5.48281 5.54137 5.58488 5.66408 5.71242 5.89168 6.28422 6.29110 6.65574 7.30895 7.35779 8.10015 8.34749 9.33346 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009060 B = 0.003504 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.841026 B = 7989.642360 C =10252.599398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.067 4.067 3 C -0.131 4.131 4 C -0.124 4.124 5 C 0.013 3.987 6 N -0.339 5.339 7 C -0.006 4.006 8 C -0.191 4.191 9 C 0.584 3.416 10 O -0.589 6.589 11 N -0.697 5.697 12 C 0.148 3.852 13 H 0.050 0.950 14 C -0.115 4.115 15 C -0.110 4.110 16 C -0.109 4.109 17 C -0.128 4.128 18 C 0.174 3.826 19 H 0.061 0.939 20 N -0.732 5.732 21 C -0.230 4.230 22 H 0.081 0.919 23 C -0.074 4.074 24 N -0.971 5.971 25 Si 0.968 3.032 26 H -0.293 1.293 27 H -0.302 1.302 28 H -0.264 1.264 29 C -0.168 4.168 30 C 0.022 3.978 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.165 0.835 35 H 0.184 0.816 36 H 0.188 0.812 37 H 0.195 0.805 38 H 0.406 0.594 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.039 0.961 47 H 0.367 0.633 48 H 0.247 0.753 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 13.172 15.886 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.068 4.068 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.104 4.104 6 N -0.002 5.002 7 C -0.140 4.140 8 C -0.199 4.199 9 C 0.372 3.628 10 O -0.471 6.471 11 N -0.345 5.345 12 C 0.043 3.957 13 H 0.069 0.931 14 C -0.154 4.154 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.169 4.169 18 C 0.065 3.935 19 H 0.079 0.921 20 N -0.371 5.371 21 C -0.361 4.361 22 H 0.099 0.901 23 C -0.266 4.266 24 N -0.622 5.622 25 Si 0.798 3.202 26 H -0.221 1.221 27 H -0.229 1.229 28 H -0.188 1.188 29 C -0.192 4.192 30 C -0.083 4.083 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.183 0.817 35 H 0.201 0.799 36 H 0.205 0.795 37 H 0.212 0.788 38 H 0.242 0.758 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.198 0.802 48 H 0.056 0.944 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.275 12.893 15.874 20.893 hybrid contribution 0.757 -0.010 -1.455 1.641 sum -3.518 12.884 14.419 19.654 Atomic orbital electron populations 1.20765 0.88254 1.04108 1.03355 1.19723 0.97737 0.89706 0.99595 1.21299 0.94252 0.98336 1.01257 1.21242 0.94873 0.97940 1.00257 1.22373 1.00083 0.82504 1.05434 1.41454 1.07195 1.05957 1.45586 1.22327 0.99807 0.80798 1.11097 1.19627 0.94704 0.91980 1.13553 1.17727 0.83383 0.86640 0.75000 1.90687 1.34675 1.68531 1.53247 1.45693 1.07877 1.07459 1.73515 1.21193 0.98104 0.79154 0.97277 0.93129 1.21811 1.02106 0.96932 0.94521 1.21479 0.97683 0.93802 1.01867 1.21512 0.97790 1.00872 0.94508 1.22095 1.00754 0.96722 0.97343 1.20663 0.94299 0.93126 0.85396 0.92144 1.42605 1.04971 1.78333 1.11184 1.19597 0.86422 1.34452 0.95657 0.90099 1.25496 0.99860 1.03340 0.97944 1.69864 1.28377 1.53211 1.10740 0.85212 0.80226 0.76551 0.78196 1.22062 1.22889 1.18842 1.21068 0.98371 0.89952 1.09787 1.18947 0.82539 0.95272 1.11583 0.90253 0.91768 0.88435 0.81738 0.79899 0.79469 0.78795 0.75815 0.92731 0.90155 0.92942 0.89384 0.90785 0.90793 0.92963 0.94221 0.80155 0.94445 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 9.91 71.24 0.71 -1.00 16 2 C -0.07 -1.40 5.91 -19.67 -0.12 -1.51 16 3 C -0.13 -2.01 9.72 22.32 0.22 -1.79 16 4 C -0.12 -1.71 9.97 22.05 0.22 -1.49 16 5 C 0.01 0.24 10.89 82.97 0.90 1.14 16 6 N -0.34 -8.90 2.92 -345.07 -1.01 -9.91 16 7 C -0.01 -0.18 11.09 84.14 0.93 0.75 16 8 C -0.19 -6.73 6.12 -20.15 -0.12 -6.85 16 9 C 0.58 23.18 7.78 86.69 0.67 23.86 16 10 O -0.59 -27.26 16.58 -4.04 -0.07 -27.32 16 11 N -0.70 -25.04 4.90 -445.71 -2.18 -27.22 16 12 C 0.15 5.34 1.97 44.99 0.09 5.43 16 13 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 14 C -0.11 -3.29 5.49 30.59 0.17 -3.12 16 15 C -0.11 -2.74 5.92 30.59 0.18 -2.56 16 16 C -0.11 -2.75 5.92 30.59 0.18 -2.57 16 17 C -0.13 -4.45 5.50 30.59 0.17 -4.28 16 18 C 0.17 6.63 2.29 44.99 0.10 6.73 16 19 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 20 N -0.73 -36.10 4.95 -322.94 -1.60 -37.70 16 21 C -0.23 -12.21 9.93 84.04 0.83 -11.38 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 23 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 24 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 25 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 28 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 29 C -0.17 -5.59 10.27 22.94 0.24 -5.35 16 30 C 0.02 0.62 6.60 38.90 0.26 0.87 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.12 7.70 -2.39 -0.02 1.11 16 33 H 0.10 0.99 8.08 -2.39 -0.02 0.97 16 34 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 35 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.20 4.67 7.42 -2.91 -0.02 4.65 16 38 H 0.41 13.35 7.50 -92.71 -0.70 12.65 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 47 H 0.37 20.67 7.80 -92.71 -0.72 19.95 16 48 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 49 H 0.15 4.76 7.94 -2.91 -0.02 4.73 16 Total: -1.00 -76.03 399.76 3.10 -72.93 By element: Atomic # 1 Polarization: 48.82 SS G_CDS: -0.46 Total: 48.36 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 6.10 Total: -6.84 kcal Atomic # 7 Polarization: -130.05 SS G_CDS: -4.51 Total: -134.56 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.07 Total: -27.32 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -76.03 3.10 -72.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085392093.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.072 kcal (2) G-P(sol) polarization free energy of solvation -76.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds