Wall clock time and date at job start Wed Apr 1 2020 00:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36863 * 125.01867 * 2 1 4 4 H 0.96995 * 125.01125 * 359.97153 * 3 2 1 5 5 C 1.37402 * 109.97806 * 179.97438 * 3 2 1 6 6 C 1.39365 * 133.24393 * 179.97438 * 5 3 2 7 7 C 1.36318 * 120.23808 * 180.02562 * 6 5 3 8 8 C 1.40213 * 120.66403 * 0.02562 * 7 6 5 9 9 C 1.47653 * 119.97408 * 180.02562 * 8 7 6 10 10 O 1.21576 * 120.00597 * 148.71006 * 9 8 7 11 11 N 1.34778 * 119.99870 * 328.71766 * 9 8 7 12 12 C 1.46503 * 119.99857 * 3.60361 * 11 9 8 13 13 C 1.46496 * 120.00313 * 183.61114 * 11 9 8 14 14 C 1.53004 * 109.47198 * 84.91870 * 13 11 9 15 15 H 1.09000 * 112.96760 * 294.20445 * 14 13 11 16 16 C 1.53948 * 113.76692 * 65.88915 * 14 13 11 17 17 C 1.53944 * 86.28994 * 137.90643 * 16 14 13 18 18 N 1.47588 * 113.76570 * 162.52865 * 14 13 11 19 19 C 1.36932 * 134.49452 * 41.06860 * 18 14 13 20 20 H 1.07996 * 120.00317 * 4.67628 * 19 18 14 21 21 C 1.38816 * 119.99804 * 184.67183 * 19 18 14 22 22 N 1.31615 * 120.00050 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99866 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47378 * 120.00396 * 23 21 19 26 26 H 1.48505 * 109.46923 * 240.00297 * 23 21 19 27 27 C 1.39155 * 120.05678 * 359.97438 * 8 7 6 28 28 C 1.39270 * 119.39133 * 359.97438 * 27 8 7 29 29 C 1.34193 * 125.02225 * 179.97438 * 2 1 3 30 30 C 1.50705 * 126.53870 * 0.05827 * 29 2 1 31 31 H 1.09000 * 109.47186 * 270.02762 * 1 2 3 32 32 H 1.08995 * 109.47086 * 30.02910 * 1 2 3 33 33 H 1.09006 * 109.46809 * 150.02527 * 1 2 3 34 34 H 1.08003 * 119.88438 * 0.02562 * 6 5 3 35 35 H 1.07995 * 119.66891 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.46681 * 94.40064 * 12 11 9 37 37 H 1.09000 * 109.47159 * 214.39423 * 12 11 9 38 38 H 1.09001 * 109.47580 * 334.39778 * 12 11 9 39 39 H 1.09005 * 109.47505 * 204.92449 * 13 11 9 40 40 H 1.09004 * 109.46752 * 324.92403 * 13 11 9 41 41 H 1.09001 * 113.73917 * 252.24975 * 16 14 13 42 42 H 1.09000 * 113.74516 * 23.45284 * 16 14 13 43 43 H 1.09004 * 113.77007 * 90.69389 * 17 16 14 44 44 H 1.09002 * 113.76420 * 221.97789 * 17 16 14 45 45 H 0.97001 * 119.99792 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.30151 * 180.27713 * 27 8 7 47 47 H 1.08994 * 109.47301 * 269.95478 * 30 29 2 48 48 H 1.09004 * 109.46996 * 29.95592 * 30 29 2 49 49 H 1.09002 * 109.46788 * 149.95501 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1209 0.0000 4 1 1.9612 2.0325 -0.0004 5 6 3.6194 0.7643 0.0006 6 6 4.8049 1.4969 0.0004 7 6 6.0080 0.8560 0.0006 8 6 6.0720 -0.5447 0.0005 9 6 7.3834 -1.2232 0.0013 10 8 7.5096 -2.3017 0.5481 11 7 8.4408 -0.6468 -0.6040 12 6 8.3092 0.6877 -1.1940 13 6 9.7215 -1.3548 -0.6722 14 6 9.7229 -2.2909 -1.8825 15 1 8.9984 -3.1005 -1.7949 16 6 9.6726 -1.5567 -3.2348 17 6 10.7226 -2.5756 -3.7136 18 7 11.0699 -2.7391 -2.2861 19 6 12.1899 -3.1427 -1.6095 20 1 12.1633 -3.2471 -0.5349 21 6 13.3594 -3.4178 -2.3048 22 7 13.3920 -3.2901 -3.6144 23 14 14.8870 -3.9691 -1.3819 24 1 14.5906 -4.0340 0.0718 25 1 15.2984 -5.3123 -1.8631 26 1 15.9864 -2.9997 -1.6206 27 6 4.9007 -1.2959 0.0007 28 6 3.6703 -0.6435 0.0015 29 6 2.2772 -1.0989 0.0005 30 6 1.8005 -2.5286 -0.0001 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8903 -0.5135 34 1 4.7704 2.5764 0.0000 35 1 6.9210 1.4328 0.0000 36 1 8.6324 1.4376 -0.4719 37 1 8.9299 0.7527 -2.0876 38 1 7.2676 0.8659 -1.4612 39 1 10.5315 -0.6320 -0.7709 40 1 9.8633 -1.9375 0.2379 41 1 8.7133 -1.6424 -3.7452 42 1 10.0410 -0.5318 -3.1917 43 1 10.2930 -3.4702 -4.1646 44 1 11.5186 -2.1364 -4.3149 45 1 14.2094 -3.4820 -4.1002 46 1 4.9454 -2.3750 0.0051 47 1 1.6855 -2.8737 1.0273 48 1 0.8413 -2.5916 -0.5141 49 1 2.5300 -3.1546 -0.5141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085965359.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:11 Heat of formation + Delta-G solvation = 94.251647 kcal Electronic energy + Delta-G solvation = -29234.585647 eV Core-core repulsion = 25357.593456 eV Total energy + Delta-G solvation = -3876.992192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.67896 -39.89567 -37.84501 -36.81063 -35.15973 -33.50598 -32.12006 -31.51064 -30.38216 -29.09853 -27.83178 -27.67823 -26.40466 -26.05096 -23.49077 -23.23573 -21.92450 -21.73626 -19.87324 -19.13410 -18.78825 -17.88704 -17.32297 -16.60168 -16.12410 -15.53969 -15.36345 -15.20315 -14.89724 -14.44459 -14.23421 -14.09483 -13.78911 -13.52291 -13.45774 -13.27642 -13.22774 -13.04021 -12.82975 -12.73881 -12.50055 -12.32023 -12.12420 -11.85555 -11.78698 -11.39715 -11.34733 -11.00025 -10.86617 -10.71018 -10.62781 -10.37869 -9.78169 -9.73808 -9.68507 -9.58987 -9.42846 -8.70733 -8.35601 -8.22509 -7.80615 -6.78133 -5.67967 -3.00874 0.88195 1.11551 2.35547 2.76553 2.99863 3.25268 3.44083 3.50203 3.52477 3.83898 4.30967 4.49322 4.53253 4.65549 4.71123 4.80490 4.91993 5.02517 5.05053 5.19236 5.25448 5.30059 5.39384 5.43422 5.51183 5.52426 5.54861 5.56168 5.61395 5.67666 5.78631 5.84012 5.89231 5.95033 6.07395 6.17858 6.25703 6.33677 6.38243 6.43673 6.53695 6.56229 6.72949 6.80222 6.87972 6.92815 7.22641 7.33956 7.53500 7.67532 7.69568 8.07618 8.46599 9.13341 9.79628 10.70040 11.48431 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.024254 B = 0.002195 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.156385 B =12754.232564 C =12986.332020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.066 3.934 3 N -0.590 5.590 4 H 0.414 0.586 5 C 0.116 3.884 6 C -0.141 4.141 7 C -0.081 4.081 8 C -0.155 4.155 9 C 0.558 3.442 10 O -0.537 6.537 11 N -0.601 5.601 12 C 0.060 3.940 13 C 0.119 3.881 14 C 0.131 3.869 15 H 0.047 0.953 16 C -0.158 4.158 17 C 0.155 3.845 18 N -0.603 5.603 19 C -0.217 4.217 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.005 4.005 28 C -0.114 4.114 29 C -0.159 4.159 30 C -0.080 4.080 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.147 0.853 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.022 0.978 44 H 0.077 0.923 45 H 0.251 0.749 46 H 0.133 0.867 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.130 13.745 5.381 30.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 N -0.194 5.194 4 H 0.250 0.750 5 C 0.008 3.992 6 C -0.161 4.161 7 C -0.100 4.100 8 C -0.159 4.159 9 C 0.346 3.654 10 O -0.415 6.415 11 N -0.333 5.333 12 C -0.082 4.082 13 C -0.004 4.004 14 C 0.023 3.977 15 H 0.064 0.936 16 C -0.196 4.196 17 C 0.030 3.970 18 N -0.329 5.329 19 C -0.345 4.345 20 H 0.097 0.903 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.740 3.260 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.025 4.025 28 C -0.119 4.119 29 C -0.166 4.166 30 C -0.137 4.137 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.141 0.859 35 H 0.165 0.835 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.040 0.960 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.151 0.849 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.771 13.158 5.697 30.368 hybrid contribution 0.794 0.157 0.367 0.889 sum -25.977 13.315 6.064 29.814 Atomic orbital electron populations 1.20453 0.87720 1.03638 1.03060 1.20049 0.93243 0.85421 1.05331 1.41608 1.04023 1.08141 1.65594 0.74954 1.18351 0.84549 0.94087 1.02217 1.19657 0.89369 0.99109 1.08007 1.21304 0.98024 0.93514 0.97194 1.19626 0.93262 0.93646 1.09407 1.18234 0.83662 0.84920 0.78565 1.90788 1.84386 1.21534 1.44793 1.47676 1.11649 1.17915 1.56082 1.22480 1.03510 0.83513 0.98739 1.21784 0.82563 0.95793 1.00266 1.22520 0.89082 0.93727 0.92329 0.93552 1.23751 0.98750 0.99484 0.97597 1.22302 0.93444 0.93289 0.87924 1.46082 1.06866 1.77772 1.02216 1.19078 0.86577 1.37957 0.90882 0.90345 1.24769 0.97702 1.02425 0.95699 1.69833 1.26773 1.54921 1.05379 0.86076 0.83187 0.77921 0.78809 1.20433 1.21855 1.21797 1.20595 0.88972 0.99995 0.92912 1.18970 0.93002 0.91895 1.08003 1.20079 0.90341 0.94941 1.11259 1.20156 1.00802 0.90911 1.01864 0.90535 0.91471 0.89646 0.85853 0.83545 0.92520 0.90669 0.89525 0.89801 0.90569 0.93429 0.90960 0.95985 0.90458 0.93853 0.84941 0.91677 0.91861 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.18 36.01 0.37 -0.03 16 2 C 0.07 0.53 7.08 -81.77 -0.58 -0.05 16 3 N -0.59 -4.58 6.05 -6.91 -0.04 -4.62 16 4 H 0.41 1.89 8.96 -40.82 -0.37 1.52 16 5 C 0.12 1.21 7.27 -83.95 -0.61 0.60 16 6 C -0.14 -1.31 10.00 -39.85 -0.40 -1.71 16 7 C -0.08 -0.87 7.36 -39.53 -0.29 -1.16 16 8 C -0.16 -2.15 5.47 -104.97 -0.57 -2.72 16 9 C 0.56 9.50 7.40 -12.42 -0.09 9.41 16 10 O -0.54 -11.30 16.36 5.30 0.09 -11.21 16 11 N -0.60 -9.47 2.79 -182.76 -0.51 -9.98 16 12 C 0.06 0.68 8.58 59.85 0.51 1.19 16 13 C 0.12 2.28 5.31 -4.04 -0.02 2.26 16 14 C 0.13 2.87 4.54 -66.86 -0.30 2.56 16 15 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.16 -3.09 7.18 -25.79 -0.19 -3.27 16 17 C 0.16 3.81 7.64 -2.85 -0.02 3.79 16 18 N -0.60 -15.94 3.58 -169.69 -0.61 -16.55 16 19 C -0.22 -6.24 10.51 -15.06 -0.16 -6.40 16 20 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 22 N -0.92 -27.86 11.32 55.49 0.63 -27.23 16 23 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 C -0.01 -0.07 9.65 -38.86 -0.37 -0.45 16 28 C -0.11 -1.39 6.34 -105.16 -0.67 -2.05 16 29 C -0.16 -1.61 6.32 -102.69 -0.65 -2.26 16 30 C -0.08 -0.65 10.17 36.01 0.37 -0.28 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.32 7.04 -51.93 -0.37 -0.05 16 34 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 35 H 0.15 1.29 4.71 -52.49 -0.25 1.04 16 36 H 0.06 0.52 7.39 -51.93 -0.38 0.13 16 37 H 0.07 0.85 6.43 -51.93 -0.33 0.52 16 38 H 0.09 0.85 4.75 -51.93 -0.25 0.60 16 39 H 0.08 1.59 8.03 -51.93 -0.42 1.17 16 40 H 0.08 1.61 7.53 -51.93 -0.39 1.22 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.32 6.89 -51.93 -0.36 0.96 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 2.05 6.98 -51.93 -0.36 1.69 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.13 1.86 7.93 -52.49 -0.42 1.45 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.38 7.06 -51.93 -0.37 0.02 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 392.37 15.07 5.91 5.91 Total: -1.00 -36.08 392.37 -10.51 -46.59 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.18 Total: 0.33 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.78 Total: -0.97 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.53 Total: -58.38 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.08 -10.51 -46.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085965359.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.844 kcal (2) G-P(sol) polarization free energy of solvation -36.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds