Wall clock time and date at job start Wed Apr 1 2020 00:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36863 * 125.01867 * 2 1 4 4 H 0.96995 * 125.01125 * 359.97153 * 3 2 1 5 5 C 1.37402 * 109.97806 * 179.97438 * 3 2 1 6 6 C 1.39365 * 133.24393 * 179.97438 * 5 3 2 7 7 C 1.36318 * 120.23808 * 180.02562 * 6 5 3 8 8 C 1.40213 * 120.66403 * 0.02562 * 7 6 5 9 9 C 1.47653 * 119.97408 * 180.02562 * 8 7 6 10 10 O 1.21576 * 120.00597 * 148.71006 * 9 8 7 11 11 N 1.34778 * 119.99870 * 328.71766 * 9 8 7 12 12 C 1.46503 * 119.99857 * 3.60361 * 11 9 8 13 13 C 1.46496 * 120.00313 * 183.61114 * 11 9 8 14 14 C 1.53004 * 109.47198 * 84.91870 * 13 11 9 15 15 H 1.09000 * 112.96760 * 294.20445 * 14 13 11 16 16 C 1.53948 * 113.76692 * 65.88915 * 14 13 11 17 17 C 1.53944 * 86.28994 * 137.90643 * 16 14 13 18 18 N 1.47588 * 113.76570 * 162.52865 * 14 13 11 19 19 C 1.36932 * 134.49452 * 41.06860 * 18 14 13 20 20 H 1.07996 * 120.00317 * 4.67628 * 19 18 14 21 21 C 1.38816 * 119.99804 * 184.67183 * 19 18 14 22 22 N 1.31615 * 120.00050 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99866 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47378 * 120.00396 * 23 21 19 26 26 H 1.48505 * 109.46923 * 240.00297 * 23 21 19 27 27 C 1.39155 * 120.05678 * 359.97438 * 8 7 6 28 28 C 1.39270 * 119.39133 * 359.97438 * 27 8 7 29 29 C 1.34193 * 125.02225 * 179.97438 * 2 1 3 30 30 C 1.50705 * 126.53870 * 0.05827 * 29 2 1 31 31 H 1.09000 * 109.47186 * 270.02762 * 1 2 3 32 32 H 1.08995 * 109.47086 * 30.02910 * 1 2 3 33 33 H 1.09006 * 109.46809 * 150.02527 * 1 2 3 34 34 H 1.08003 * 119.88438 * 0.02562 * 6 5 3 35 35 H 1.07995 * 119.66891 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.46681 * 94.40064 * 12 11 9 37 37 H 1.09000 * 109.47159 * 214.39423 * 12 11 9 38 38 H 1.09001 * 109.47580 * 334.39778 * 12 11 9 39 39 H 1.09005 * 109.47505 * 204.92449 * 13 11 9 40 40 H 1.09004 * 109.46752 * 324.92403 * 13 11 9 41 41 H 1.09001 * 113.73917 * 252.24975 * 16 14 13 42 42 H 1.09000 * 113.74516 * 23.45284 * 16 14 13 43 43 H 1.09004 * 113.77007 * 90.69389 * 17 16 14 44 44 H 1.09002 * 113.76420 * 221.97789 * 17 16 14 45 45 H 0.97001 * 119.99792 * 179.97438 * 22 21 19 46 46 H 1.08002 * 120.30151 * 180.27713 * 27 8 7 47 47 H 1.08994 * 109.47301 * 269.95478 * 30 29 2 48 48 H 1.09004 * 109.46996 * 29.95592 * 30 29 2 49 49 H 1.09002 * 109.46788 * 149.95501 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1209 0.0000 4 1 1.9612 2.0325 -0.0004 5 6 3.6194 0.7643 0.0006 6 6 4.8049 1.4969 0.0004 7 6 6.0080 0.8560 0.0006 8 6 6.0720 -0.5447 0.0005 9 6 7.3834 -1.2232 0.0013 10 8 7.5096 -2.3017 0.5481 11 7 8.4408 -0.6468 -0.6040 12 6 8.3092 0.6877 -1.1940 13 6 9.7215 -1.3548 -0.6722 14 6 9.7229 -2.2909 -1.8825 15 1 8.9984 -3.1005 -1.7949 16 6 9.6726 -1.5567 -3.2348 17 6 10.7226 -2.5756 -3.7136 18 7 11.0699 -2.7391 -2.2861 19 6 12.1899 -3.1427 -1.6095 20 1 12.1633 -3.2471 -0.5349 21 6 13.3594 -3.4178 -2.3048 22 7 13.3920 -3.2901 -3.6144 23 14 14.8870 -3.9691 -1.3819 24 1 14.5906 -4.0340 0.0718 25 1 15.2984 -5.3123 -1.8631 26 1 15.9864 -2.9997 -1.6206 27 6 4.9007 -1.2959 0.0007 28 6 3.6703 -0.6435 0.0015 29 6 2.2772 -1.0989 0.0005 30 6 1.8005 -2.5286 -0.0001 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8903 -0.5135 34 1 4.7704 2.5764 0.0000 35 1 6.9210 1.4328 0.0000 36 1 8.6324 1.4376 -0.4719 37 1 8.9299 0.7527 -2.0876 38 1 7.2676 0.8659 -1.4612 39 1 10.5315 -0.6320 -0.7709 40 1 9.8633 -1.9375 0.2379 41 1 8.7133 -1.6424 -3.7452 42 1 10.0410 -0.5318 -3.1917 43 1 10.2930 -3.4702 -4.1646 44 1 11.5186 -2.1364 -4.3149 45 1 14.2094 -3.4820 -4.1002 46 1 4.9454 -2.3750 0.0051 47 1 1.6855 -2.8737 1.0273 48 1 0.8413 -2.5916 -0.5141 49 1 2.5300 -3.1546 -0.5141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085965359.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:09 Heat of formation + Delta-G solvation = 71.916995 kcal Electronic energy + Delta-G solvation = -29235.554151 eV Core-core repulsion = 25357.593456 eV Total energy + Delta-G solvation = -3877.960695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.43717 -41.16540 -39.57272 -37.80337 -36.51309 -34.24232 -34.19684 -32.29037 -31.25276 -30.19010 -29.86674 -28.60509 -27.57630 -26.77945 -25.33113 -24.73628 -23.24796 -22.50328 -21.12344 -20.65781 -19.81969 -18.77684 -18.62928 -18.18262 -17.43640 -17.02765 -16.57673 -16.35729 -15.96527 -15.84572 -15.53404 -15.37382 -15.00737 -14.77263 -14.36143 -14.19164 -13.96060 -13.85314 -13.81114 -13.74305 -13.68207 -13.60707 -13.36704 -13.02280 -12.91453 -12.73585 -12.60413 -12.53578 -12.45240 -12.24920 -12.02554 -11.80937 -11.67062 -11.56746 -11.35722 -10.89422 -10.84756 -10.52222 -9.66992 -9.13415 -8.90408 -8.53782 -7.89380 -5.24255 -0.02042 0.28112 1.43763 1.45278 1.55667 1.66611 1.77408 2.01385 2.15737 2.48421 2.88908 3.29524 3.40010 3.56894 3.70090 3.80665 3.87461 4.04817 4.18304 4.22396 4.26905 4.28986 4.36055 4.45086 4.48036 4.52417 4.65435 4.74822 4.77934 4.80199 4.81039 4.87244 4.90349 4.93865 4.96331 5.03144 5.04949 5.11338 5.12904 5.22217 5.23534 5.39752 5.41884 5.48779 5.56578 5.66948 5.73022 5.83354 5.95390 6.11128 6.44195 6.69642 6.92943 7.16575 7.60697 8.57241 9.26661 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.024254 B = 0.002195 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.156385 B =12754.232564 C =12986.332020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.084 3.916 3 N -0.576 5.576 4 H 0.432 0.568 5 C 0.110 3.890 6 C -0.123 4.123 7 C -0.084 4.084 8 C -0.170 4.170 9 C 0.552 3.448 10 O -0.594 6.594 11 N -0.597 5.597 12 C 0.052 3.948 13 C 0.136 3.864 14 C 0.130 3.870 15 H 0.022 0.978 16 C -0.121 4.121 17 C 0.147 3.853 18 N -0.629 5.629 19 C -0.230 4.230 20 H 0.075 0.925 21 C -0.066 4.066 22 N -0.951 5.951 23 Si 0.977 3.023 24 H -0.269 1.269 25 H -0.294 1.294 26 H -0.285 1.285 27 C -0.028 4.028 28 C -0.137 4.137 29 C -0.198 4.198 30 C -0.078 4.078 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.008 0.992 44 H 0.054 0.946 45 H 0.249 0.751 46 H 0.107 0.893 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.536 17.499 5.674 34.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.024 4.024 3 N -0.181 5.181 4 H 0.273 0.727 5 C 0.000 4.000 6 C -0.144 4.144 7 C -0.103 4.103 8 C -0.174 4.174 9 C 0.343 3.657 10 O -0.476 6.476 11 N -0.327 5.327 12 C -0.089 4.089 13 C 0.011 3.989 14 C 0.023 3.977 15 H 0.039 0.961 16 C -0.159 4.159 17 C 0.022 3.978 18 N -0.356 5.356 19 C -0.358 4.358 20 H 0.093 0.907 21 C -0.259 4.259 22 N -0.600 5.600 23 Si 0.805 3.195 24 H -0.194 1.194 25 H -0.221 1.221 26 H -0.212 1.212 27 C -0.048 4.048 28 C -0.142 4.142 29 C -0.204 4.204 30 C -0.135 4.135 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.182 0.818 35 H 0.188 0.812 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.026 0.974 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.126 0.874 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -29.224 16.984 5.986 34.327 hybrid contribution 1.357 -1.009 0.282 1.715 sum -27.866 15.975 6.268 32.727 Atomic orbital electron populations 1.20610 0.84744 1.05111 1.04313 1.20598 0.94885 0.84685 1.02210 1.41652 1.03014 1.09184 1.64229 0.72747 1.18570 0.86048 0.93412 1.01926 1.20041 0.88127 1.00924 1.05280 1.21473 0.99749 0.91788 0.97305 1.19436 0.91066 0.95188 1.11709 1.18849 0.84923 0.84325 0.77592 1.90747 1.85328 1.24166 1.47316 1.47693 1.09931 1.19277 1.55844 1.22848 1.05147 0.81355 0.99550 1.21331 0.84678 0.95373 0.97497 1.22564 0.86352 0.93754 0.95011 0.96063 1.23503 0.98443 0.98964 0.94963 1.22298 0.94310 0.94211 0.86993 1.46488 1.07869 1.77828 1.03376 1.19364 0.87779 1.37581 0.91090 0.90702 1.25596 1.00616 1.03022 0.96627 1.70008 1.27282 1.56011 1.06682 0.85036 0.79382 0.77067 0.78008 1.19402 1.22131 1.21184 1.20504 0.90277 0.99081 0.94928 1.19236 0.93234 0.93373 1.08386 1.20390 0.89937 0.96442 1.13639 1.20152 1.01348 0.90033 1.01981 0.89227 0.89381 0.88829 0.81827 0.81231 0.89469 0.90213 0.87538 0.89012 0.93505 0.90567 0.88658 0.97391 0.92718 0.94220 0.87450 0.91663 0.89587 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.18 71.24 0.73 0.27 16 2 C 0.08 1.12 7.08 40.85 0.29 1.41 16 3 N -0.58 -6.91 6.05 -175.78 -1.06 -7.97 16 4 H 0.43 1.98 8.96 -92.71 -0.83 1.14 16 5 C 0.11 2.00 7.27 39.19 0.28 2.29 16 6 C -0.12 -1.84 10.00 22.09 0.22 -1.62 16 7 C -0.08 -1.58 7.36 22.30 0.16 -1.42 16 8 C -0.17 -4.74 5.47 -20.09 -0.11 -4.85 16 9 C 0.55 19.50 7.40 86.73 0.64 20.14 16 10 O -0.59 -26.94 16.36 -3.96 -0.06 -27.01 16 11 N -0.60 -18.57 2.79 -850.39 -2.37 -20.93 16 12 C 0.05 1.01 8.58 127.77 1.10 2.10 16 13 C 0.14 5.29 5.31 86.38 0.46 5.75 16 14 C 0.13 5.84 4.54 45.09 0.20 6.04 16 15 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 16 C -0.12 -4.63 7.18 31.25 0.22 -4.41 16 17 C 0.15 7.38 7.64 86.43 0.66 8.04 16 18 N -0.63 -34.25 3.58 -690.78 -2.48 -36.72 16 19 C -0.23 -13.56 10.51 84.04 0.88 -12.68 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 21 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 22 N -0.95 -58.88 11.32 21.65 0.25 -58.64 16 23 Si 0.98 47.65 29.55 68.60 2.03 49.68 16 24 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 C -0.03 -0.82 9.65 22.74 0.22 -0.60 16 28 C -0.14 -3.32 6.34 -20.21 -0.13 -3.45 16 29 C -0.20 -3.86 6.32 -18.61 -0.12 -3.98 16 30 C -0.08 -1.27 10.17 71.24 0.72 -0.55 16 31 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.09 0.37 7.04 -2.38 -0.02 0.35 16 34 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 35 H 0.17 2.30 4.71 -2.91 -0.01 2.29 16 36 H 0.09 1.23 7.39 -2.39 -0.02 1.21 16 37 H 0.08 1.52 6.43 -2.39 -0.02 1.51 16 38 H 0.11 1.72 4.75 -2.39 -0.01 1.70 16 39 H 0.09 3.43 8.03 -2.38 -0.02 3.41 16 40 H 0.05 2.09 7.53 -2.38 -0.02 2.07 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.10 3.25 6.89 -2.39 -0.02 3.23 16 43 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 44 H 0.05 2.98 6.98 -2.39 -0.02 2.97 16 45 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 46 H 0.11 3.48 7.93 -2.91 -0.02 3.46 16 47 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.09 0.94 7.06 -2.39 -0.02 0.92 16 49 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -84.23 392.37 3.36 -80.87 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.15 Total: 11.66 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 6.91 Total: 9.07 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -5.66 Total: -124.27 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.06 Total: -27.01 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -84.23 3.36 -80.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085965359.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.787 kcal (2) G-P(sol) polarization free energy of solvation -84.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds