Wall clock time and date at job start Wed Apr 1 2020 00:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.47032 * 2 1 4 4 C 1.37803 * 120.03431 * 264.98191 * 3 2 1 5 5 C 1.38706 * 120.63357 * 180.02562 * 4 3 2 6 6 C 1.37795 * 120.30242 * 359.97438 * 5 4 3 7 7 C 1.39242 * 119.67100 * 0.02562 * 6 5 4 8 8 C 1.47437 * 134.01289 * 180.02562 * 7 6 5 9 9 C 1.46916 * 126.76827 * 359.97321 * 8 7 6 10 10 O 1.21670 * 120.00196 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99888 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 H 1.09001 * 112.84756 * 314.66682 * 13 12 11 15 15 C 1.53778 * 113.61578 * 85.86066 * 13 12 11 16 16 C 1.53960 * 87.01942 * 139.95208 * 15 13 12 17 17 H 1.09001 * 113.74365 * 220.06325 * 16 15 13 18 18 N 1.46498 * 113.53818 * 89.18978 * 16 15 13 19 19 C 1.36936 * 120.00116 * 107.50195 * 18 16 15 20 20 H 1.07999 * 119.99591 * 0.02562 * 19 18 16 21 21 C 1.38805 * 119.99895 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00284 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99810 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.46991 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46985 * 120.00395 * 23 21 19 26 26 H 1.48503 * 109.46967 * 240.00110 * 23 21 19 27 27 C 1.53778 * 113.61214 * 183.47232 * 13 12 11 28 28 C 1.36372 * 106.46687 * 180.24114 * 8 7 6 29 29 N 1.35478 * 109.77188 * 359.59841 * 28 8 7 30 30 H 0.96999 * 124.78313 * 180.15039 * 29 28 8 31 31 C 1.37965 * 110.42744 * 0.41880 * 29 28 8 32 32 H 1.08996 * 109.47145 * 299.99523 * 1 2 3 33 33 H 1.08999 * 109.47462 * 60.00402 * 1 2 3 34 34 H 1.09000 * 109.46894 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47763 * 240.00069 * 2 1 3 36 36 H 1.09009 * 109.47441 * 119.99560 * 2 1 3 37 37 H 1.08003 * 119.68323 * 359.97438 * 4 3 2 38 38 H 1.07998 * 119.84805 * 179.97438 * 5 4 3 39 39 H 1.08001 * 120.17128 * 180.02562 * 6 5 4 40 40 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 42 42 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 43 43 H 1.08991 * 113.61518 * 254.52855 * 15 13 12 44 44 H 1.09002 * 113.61130 * 25.43890 * 15 13 12 45 45 H 0.97009 * 119.99823 * 287.50974 * 18 16 15 46 46 H 0.97002 * 120.00053 * 179.97438 * 22 21 19 47 47 H 1.09000 * 113.61667 * 334.56553 * 27 13 12 48 48 H 1.09002 * 113.61425 * 105.47189 * 27 13 12 49 49 H 1.07996 * 125.11150 * 179.76014 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3606 2.0364 -1.1884 5 6 2.8246 3.3435 -1.2028 6 6 2.9630 4.0451 -0.0250 7 6 2.6349 3.4355 1.1831 8 6 2.6580 3.8730 2.5909 9 6 3.0756 5.1877 3.0964 10 8 3.4513 6.0465 2.3207 11 7 3.0426 5.4425 4.4195 12 6 3.4585 6.7537 4.9236 13 6 3.3266 6.7795 6.4476 14 1 2.3848 6.3572 6.7981 15 6 4.5600 6.2282 7.1821 16 6 4.3666 7.3701 8.1965 17 1 5.2994 7.8294 8.5235 18 7 3.4839 7.0188 9.3117 19 6 4.0075 6.8086 10.5594 20 1 5.0711 6.9023 10.7214 21 6 3.1711 6.4763 11.6161 22 7 1.8748 6.3626 11.4188 23 14 3.8853 6.1903 13.3184 24 1 5.3576 6.3785 13.2754 25 1 3.2906 7.1591 14.2738 26 1 3.5753 4.8065 13.7592 27 6 3.6596 8.1449 7.0717 28 6 2.2211 2.8148 3.3318 29 7 1.9242 1.7752 2.5154 30 1 1.5925 0.9141 2.8143 31 6 2.1660 2.1120 1.1995 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8901 37 1 2.2564 1.4956 -2.1175 38 1 3.0786 3.8134 -2.1415 39 1 3.3241 5.0629 -0.0387 40 1 2.7427 4.7580 5.0379 41 1 4.4964 6.9372 4.6459 42 1 2.8243 7.5273 4.4905 43 1 4.4081 5.2357 7.6064 44 1 5.4823 6.3071 6.6066 45 1 2.5284 6.9349 9.1662 46 1 1.2903 6.1300 12.1572 47 1 4.3353 8.7487 6.4660 48 1 2.7820 8.6974 7.4071 49 1 2.1236 2.8076 4.4073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086559259.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:30 Heat of formation + Delta-G solvation = 37.287312 kcal Electronic energy + Delta-G solvation = -28160.070420 eV Core-core repulsion = 24280.608070 eV Total energy + Delta-G solvation = -3879.462351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.75681 -39.42378 -38.32637 -37.48613 -34.68930 -34.46138 -33.20282 -31.28470 -30.20036 -29.49660 -29.03190 -27.10249 -25.05184 -24.34496 -23.87616 -22.96017 -22.09639 -21.94006 -21.38253 -19.65246 -18.32269 -18.15222 -17.32347 -16.70575 -16.34898 -15.81058 -15.47166 -15.38923 -15.01958 -14.91165 -14.69572 -14.29665 -14.10717 -14.03292 -13.77293 -13.34837 -13.19661 -13.04827 -12.95085 -12.82728 -12.32198 -12.22908 -11.92728 -11.90004 -11.74071 -11.39685 -11.37935 -11.05760 -11.03047 -10.87881 -10.47823 -10.16981 -10.08974 -9.79774 -9.74908 -9.71077 -9.44577 -8.94074 -8.87791 -8.55094 -7.93009 -7.01956 -5.83411 -3.12165 0.74287 1.33394 1.83635 2.69000 3.31412 3.34827 3.39286 3.45588 3.47510 3.75921 4.31672 4.38907 4.52865 4.53581 4.65968 4.77667 4.90206 4.92110 5.06689 5.09600 5.11235 5.19368 5.25047 5.30305 5.41662 5.43846 5.44633 5.47397 5.63360 5.66178 5.74118 5.74889 5.88406 5.89370 6.01184 6.13352 6.21456 6.23160 6.27743 6.38070 6.40505 6.45522 6.51062 6.61643 6.74352 6.85688 6.91389 7.04289 7.06612 7.65137 7.67488 8.35942 8.37741 9.46718 10.04602 10.38813 11.39079 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.001909 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.622170 B =14662.692075 C =15920.036938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.092 4.092 4 C -0.101 4.101 5 C -0.140 4.140 6 C -0.067 4.067 7 C -0.060 4.060 8 C -0.225 4.225 9 C 0.586 3.414 10 O -0.548 6.548 11 N -0.724 5.724 12 C 0.133 3.867 13 C -0.119 4.119 14 H 0.092 0.908 15 C -0.168 4.168 16 C 0.166 3.834 17 H 0.062 0.938 18 N -0.706 5.706 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 C -0.148 4.148 28 C 0.109 3.891 29 N -0.577 5.577 30 H 0.419 0.581 31 C 0.090 3.910 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.398 0.602 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 -12.446 -24.833 27.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.120 4.120 5 C -0.159 4.159 6 C -0.085 4.085 7 C -0.064 4.064 8 C -0.236 4.236 9 C 0.374 3.626 10 O -0.427 6.427 11 N -0.374 5.374 12 C 0.010 3.990 13 C -0.138 4.138 14 H 0.110 0.890 15 C -0.209 4.209 16 C 0.054 3.946 17 H 0.080 0.920 18 N -0.344 5.344 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.187 4.187 28 C -0.024 4.024 29 N -0.178 5.178 30 H 0.256 0.744 31 C -0.015 4.015 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.232 0.768 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.249 -11.922 -25.140 27.852 hybrid contribution -0.374 -1.019 1.458 1.818 sum -1.623 -12.942 -23.682 27.037 Atomic orbital electron populations 1.21769 0.94708 1.01680 1.02381 1.20466 0.96140 0.92608 1.02761 1.18827 1.04281 0.96130 0.90183 1.20708 0.99816 0.95171 0.96323 1.20957 1.02310 0.94697 0.97902 1.20709 0.97424 1.00243 0.90123 1.18729 1.02691 0.92547 0.92445 1.20096 1.15685 0.95245 0.92548 1.17214 0.77406 0.85942 0.81992 1.90754 1.48225 1.47318 1.56360 1.45883 1.67908 1.16790 1.06844 1.21451 1.00010 0.83710 0.93808 1.22701 1.00094 0.99434 0.91559 0.88984 1.23904 0.95823 1.01605 0.99554 1.21107 0.93929 0.92677 0.86869 0.91968 1.42180 1.05986 1.81993 1.04284 1.19344 0.92700 1.39416 0.85691 0.90930 1.24762 0.95444 1.02561 0.98218 1.69669 1.02220 1.55008 1.31200 0.86102 0.78088 0.77390 0.84522 1.20488 1.21839 1.21880 1.23436 1.01268 0.95346 0.98688 1.22174 0.97174 0.86537 0.96480 1.41505 1.56749 1.14772 1.04813 0.74370 1.18022 1.03987 0.94947 0.84556 0.92922 0.92184 0.92334 0.90579 0.91810 0.85772 0.85772 0.84903 0.76823 0.91582 0.91839 0.91592 0.91380 0.78130 0.93518 0.90428 0.91340 0.80231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.44 16 2 C -0.08 -0.49 6.07 -27.88 -0.17 -0.66 16 3 C -0.09 -0.79 5.15 -104.47 -0.54 -1.33 16 4 C -0.10 -0.86 9.64 -39.57 -0.38 -1.24 16 5 C -0.14 -1.34 10.03 -39.57 -0.40 -1.74 16 6 C -0.07 -0.81 9.85 -39.37 -0.39 -1.20 16 7 C -0.06 -0.75 6.27 -104.96 -0.66 -1.41 16 8 C -0.22 -2.76 6.27 -103.31 -0.65 -3.40 16 9 C 0.59 8.44 7.80 -12.75 -0.10 8.34 16 10 O -0.55 -9.75 16.16 5.22 0.08 -9.67 16 11 N -0.72 -9.06 5.54 -61.54 -0.34 -9.40 16 12 C 0.13 1.81 5.50 -4.04 -0.02 1.79 16 13 C -0.12 -1.75 3.62 -89.81 -0.33 -2.07 16 14 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 15 C -0.17 -2.73 7.44 -25.83 -0.19 -2.92 16 16 C 0.17 3.19 4.57 -67.02 -0.31 2.89 16 17 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 18 N -0.71 -17.08 5.31 -52.55 -0.28 -17.36 16 19 C -0.24 -6.51 9.97 -15.06 -0.15 -6.66 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 23 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 C -0.15 -2.34 7.39 -25.92 -0.19 -2.53 16 28 C 0.11 0.94 11.33 -16.61 -0.19 0.75 16 29 N -0.58 -4.42 5.99 -10.49 -0.06 -4.48 16 30 H 0.42 1.91 8.96 -40.82 -0.37 1.54 16 31 C 0.09 0.91 6.94 -83.97 -0.58 0.32 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.38 8.05 -51.93 -0.42 -0.04 16 36 H 0.06 0.33 8.12 -51.92 -0.42 -0.09 16 37 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.13 1.73 7.45 -52.49 -0.39 1.34 16 40 H 0.40 4.09 7.35 -40.82 -0.30 3.79 16 41 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 45 H 0.38 9.83 7.90 -40.82 -0.32 9.51 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 48 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.18 0.96 7.38 -52.49 -0.39 0.57 16 LS Contribution 406.62 15.07 6.13 6.13 Total: -1.00 -33.74 406.62 -11.35 -45.09 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -7.62 Total: 11.51 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -4.97 Total: -12.00 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.04 Total: -57.98 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.74 -11.35 -45.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086559259.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.379 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds