Wall clock time and date at job start Wed Apr 1 2020 00:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.47032 * 2 1 4 4 C 1.37803 * 120.03431 * 264.98191 * 3 2 1 5 5 C 1.38706 * 120.63357 * 180.02562 * 4 3 2 6 6 C 1.37795 * 120.30242 * 359.97438 * 5 4 3 7 7 C 1.39242 * 119.67100 * 0.02562 * 6 5 4 8 8 C 1.47437 * 134.01289 * 180.02562 * 7 6 5 9 9 C 1.46916 * 126.76827 * 359.97321 * 8 7 6 10 10 O 1.21670 * 120.00196 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99888 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 H 1.09001 * 112.84756 * 314.66682 * 13 12 11 15 15 C 1.53778 * 113.61578 * 85.86066 * 13 12 11 16 16 C 1.53960 * 87.01942 * 139.95208 * 15 13 12 17 17 H 1.09001 * 113.74365 * 220.06325 * 16 15 13 18 18 N 1.46498 * 113.53818 * 89.18978 * 16 15 13 19 19 C 1.36936 * 120.00116 * 107.50195 * 18 16 15 20 20 H 1.07999 * 119.99591 * 0.02562 * 19 18 16 21 21 C 1.38805 * 119.99895 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00284 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99810 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.46991 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46985 * 120.00395 * 23 21 19 26 26 H 1.48503 * 109.46967 * 240.00110 * 23 21 19 27 27 C 1.53778 * 113.61214 * 183.47232 * 13 12 11 28 28 C 1.36372 * 106.46687 * 180.24114 * 8 7 6 29 29 N 1.35478 * 109.77188 * 359.59841 * 28 8 7 30 30 H 0.96999 * 124.78313 * 180.15039 * 29 28 8 31 31 C 1.37965 * 110.42744 * 0.41880 * 29 28 8 32 32 H 1.08996 * 109.47145 * 299.99523 * 1 2 3 33 33 H 1.08999 * 109.47462 * 60.00402 * 1 2 3 34 34 H 1.09000 * 109.46894 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47763 * 240.00069 * 2 1 3 36 36 H 1.09009 * 109.47441 * 119.99560 * 2 1 3 37 37 H 1.08003 * 119.68323 * 359.97438 * 4 3 2 38 38 H 1.07998 * 119.84805 * 179.97438 * 5 4 3 39 39 H 1.08001 * 120.17128 * 180.02562 * 6 5 4 40 40 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 41 41 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 42 42 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 43 43 H 1.08991 * 113.61518 * 254.52855 * 15 13 12 44 44 H 1.09002 * 113.61130 * 25.43890 * 15 13 12 45 45 H 0.97009 * 119.99823 * 287.50974 * 18 16 15 46 46 H 0.97002 * 120.00053 * 179.97438 * 22 21 19 47 47 H 1.09000 * 113.61667 * 334.56553 * 27 13 12 48 48 H 1.09002 * 113.61425 * 105.47189 * 27 13 12 49 49 H 1.07996 * 125.11150 * 179.76014 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3606 2.0364 -1.1884 5 6 2.8246 3.3435 -1.2028 6 6 2.9630 4.0451 -0.0250 7 6 2.6349 3.4355 1.1831 8 6 2.6580 3.8730 2.5909 9 6 3.0756 5.1877 3.0964 10 8 3.4513 6.0465 2.3207 11 7 3.0426 5.4425 4.4195 12 6 3.4585 6.7537 4.9236 13 6 3.3266 6.7795 6.4476 14 1 2.3848 6.3572 6.7981 15 6 4.5600 6.2282 7.1821 16 6 4.3666 7.3701 8.1965 17 1 5.2994 7.8294 8.5235 18 7 3.4839 7.0188 9.3117 19 6 4.0075 6.8086 10.5594 20 1 5.0711 6.9023 10.7214 21 6 3.1711 6.4763 11.6161 22 7 1.8748 6.3626 11.4188 23 14 3.8853 6.1903 13.3184 24 1 5.3576 6.3785 13.2754 25 1 3.2906 7.1591 14.2738 26 1 3.5753 4.8065 13.7592 27 6 3.6596 8.1449 7.0717 28 6 2.2211 2.8148 3.3318 29 7 1.9242 1.7752 2.5154 30 1 1.5925 0.9141 2.8143 31 6 2.1660 2.1120 1.1995 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8901 37 1 2.2564 1.4956 -2.1175 38 1 3.0786 3.8134 -2.1415 39 1 3.3241 5.0629 -0.0387 40 1 2.7427 4.7580 5.0379 41 1 4.4964 6.9372 4.6459 42 1 2.8243 7.5273 4.4905 43 1 4.4081 5.2357 7.6064 44 1 5.4823 6.3071 6.6066 45 1 2.5284 6.9349 9.1662 46 1 1.2903 6.1300 12.1572 47 1 4.3353 8.7487 6.4660 48 1 2.7820 8.6974 7.4071 49 1 2.1236 2.8076 4.4073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086559259.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:28 Heat of formation + Delta-G solvation = 16.406334 kcal Electronic energy + Delta-G solvation = -28160.975887 eV Core-core repulsion = 24280.608070 eV Total energy + Delta-G solvation = -3880.367818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.49825 -40.61094 -39.62471 -38.19283 -35.95594 -35.20176 -34.90759 -32.30530 -31.73335 -30.31028 -29.77884 -28.33882 -26.41255 -25.73481 -24.90410 -24.06721 -23.00926 -22.76276 -22.30205 -20.72696 -19.65388 -19.28898 -18.89060 -17.53773 -17.33236 -16.77796 -16.60060 -16.41201 -16.25018 -15.80823 -15.64027 -15.53120 -15.45290 -14.91924 -14.73865 -14.65101 -14.45570 -14.20111 -13.74359 -13.62420 -13.54535 -13.25984 -12.93731 -12.90382 -12.88324 -12.63367 -12.56986 -12.41541 -12.11619 -12.03256 -11.84670 -11.70623 -11.53125 -11.45497 -11.03701 -10.88512 -10.72669 -10.58476 -10.01216 -9.28542 -8.98093 -8.68336 -7.94389 -5.22204 -0.00952 0.57218 1.01072 1.48559 1.49451 1.59193 2.03082 2.30880 2.42024 2.56547 2.93592 3.38394 3.68106 3.72455 3.76206 3.82718 3.84167 3.96145 4.02566 4.11553 4.18960 4.32874 4.35010 4.42928 4.47406 4.47770 4.58012 4.60333 4.70275 4.77318 4.83379 4.86053 4.95878 5.02117 5.03814 5.10578 5.14381 5.17257 5.32562 5.37470 5.38607 5.50404 5.52281 5.54042 5.58772 5.64214 5.68485 5.70821 6.12667 6.29618 6.49744 6.67056 7.34036 7.34764 8.11941 8.34631 9.28949 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.001909 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.622170 B =14662.692075 C =15920.036938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.086 4.086 4 C -0.108 4.108 5 C -0.135 4.135 6 C -0.104 4.104 7 C -0.089 4.089 8 C -0.273 4.273 9 C 0.585 3.415 10 O -0.594 6.594 11 N -0.715 5.715 12 C 0.143 3.857 13 C -0.100 4.100 14 H 0.085 0.915 15 C -0.151 4.151 16 C 0.143 3.857 17 H 0.059 0.941 18 N -0.719 5.719 19 C -0.240 4.240 20 H 0.076 0.924 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.296 1.296 26 H -0.293 1.293 27 C -0.136 4.136 28 C 0.142 3.858 29 N -0.560 5.560 30 H 0.437 0.563 31 C 0.078 3.922 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.153 0.847 38 H 0.141 0.859 39 H 0.108 0.892 40 H 0.410 0.590 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.375 0.625 46 H 0.251 0.749 47 H 0.103 0.897 48 H 0.058 0.942 49 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 -14.799 -25.452 29.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.088 4.088 4 C -0.127 4.127 5 C -0.153 4.153 6 C -0.122 4.122 7 C -0.093 4.093 8 C -0.283 4.283 9 C 0.375 3.625 10 O -0.476 6.476 11 N -0.365 5.365 12 C 0.019 3.981 13 C -0.119 4.119 14 H 0.103 0.897 15 C -0.192 4.192 16 C 0.033 3.967 17 H 0.077 0.923 18 N -0.357 5.357 19 C -0.372 4.372 20 H 0.094 0.906 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.801 3.199 24 H -0.192 1.192 25 H -0.223 1.223 26 H -0.220 1.220 27 C -0.175 4.175 28 C 0.007 3.993 29 N -0.162 5.162 30 H 0.278 0.722 31 C -0.027 4.027 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.171 0.829 38 H 0.159 0.841 39 H 0.126 0.874 40 H 0.246 0.754 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.207 0.793 46 H 0.059 0.941 47 H 0.121 0.879 48 H 0.076 0.924 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.052 -14.311 -25.780 29.505 hybrid contribution -0.401 -0.313 1.556 1.637 sum -1.453 -14.624 -24.225 28.334 Atomic orbital electron populations 1.21752 0.94273 1.02496 1.01822 1.20538 0.96337 0.90753 1.04097 1.19237 1.02644 0.97359 0.89581 1.21074 0.99283 0.94733 0.97642 1.21215 1.01173 0.95270 0.97678 1.20692 1.00121 0.99862 0.91573 1.19050 1.03489 0.94049 0.92722 1.20011 1.19501 0.95546 0.93271 1.17555 0.76599 0.86411 0.81944 1.90719 1.50539 1.48908 1.57452 1.45744 1.67495 1.16679 1.06629 1.21261 0.99873 0.84296 0.92672 1.22480 0.99070 0.98259 0.92042 0.89716 1.23716 0.97444 0.99556 0.98476 1.21424 0.93539 0.94886 0.86802 0.92316 1.42296 1.06059 1.82486 1.04841 1.19700 0.92873 1.37652 0.86930 0.90613 1.25523 0.95871 1.03617 1.01749 1.69810 1.03344 1.56866 1.31855 0.85102 0.77948 0.76729 0.80153 1.19153 1.22302 1.22031 1.23350 1.00943 0.95844 0.97394 1.22623 0.93672 0.85249 0.97724 1.41510 1.55493 1.15294 1.03932 0.72225 1.18167 1.04381 0.94260 0.85884 0.93608 0.92680 0.90825 0.89117 0.90675 0.82910 0.84075 0.87388 0.75393 0.91756 0.92255 0.92937 0.89322 0.79288 0.94055 0.87888 0.92362 0.76669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 71.98 0.71 -0.48 16 2 C -0.08 -0.70 6.07 29.85 0.18 -0.52 16 3 C -0.09 -1.31 5.15 -19.76 -0.10 -1.42 16 4 C -0.11 -1.66 9.64 22.28 0.21 -1.45 16 5 C -0.13 -2.59 10.03 22.28 0.22 -2.37 16 6 C -0.10 -2.70 9.85 22.41 0.22 -2.48 16 7 C -0.09 -2.29 6.27 -20.08 -0.13 -2.41 16 8 C -0.27 -6.69 6.27 -19.02 -0.12 -6.81 16 9 C 0.58 17.18 7.80 86.52 0.67 17.86 16 10 O -0.59 -22.29 16.16 -4.25 -0.07 -22.36 16 11 N -0.71 -17.43 5.54 -466.84 -2.59 -20.02 16 12 C 0.14 3.76 5.50 86.38 0.47 4.23 16 13 C -0.10 -2.81 3.62 -10.27 -0.04 -2.85 16 14 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 15 C -0.15 -4.71 7.44 31.18 0.23 -4.48 16 16 C 0.14 5.40 4.57 45.58 0.21 5.61 16 17 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 18 N -0.72 -34.87 5.31 -320.16 -1.70 -36.57 16 19 C -0.24 -12.98 9.97 84.03 0.84 -12.14 16 20 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 21 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 22 N -0.97 -57.72 13.06 21.65 0.28 -57.44 16 23 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 27 C -0.14 -4.16 7.39 31.12 0.23 -3.93 16 28 C 0.14 2.16 11.33 83.69 0.95 3.11 16 29 N -0.56 -7.26 5.99 -187.09 -1.12 -8.38 16 30 H 0.44 2.53 8.96 -92.71 -0.83 1.70 16 31 C 0.08 1.48 6.94 38.91 0.27 1.75 16 32 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.09 0.57 8.05 -2.39 -0.02 0.55 16 36 H 0.07 0.51 8.12 -2.38 -0.02 0.49 16 37 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 39 H 0.11 3.21 7.45 -2.91 -0.02 3.19 16 40 H 0.41 7.79 7.35 -92.71 -0.68 7.11 16 41 H 0.06 1.75 7.87 -2.39 -0.02 1.73 16 42 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.09 2.43 7.92 -2.39 -0.02 2.41 16 45 H 0.37 19.43 7.90 -92.70 -0.73 18.70 16 46 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 47 H 0.10 2.65 8.10 -2.39 -0.02 2.63 16 48 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.22 1.54 7.38 -2.91 -0.02 1.52 16 Total: -1.00 -75.73 406.62 1.09 -74.64 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -1.26 Total: 35.40 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.51 Total: -12.53 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -5.12 Total: -122.41 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.07 Total: -22.36 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -75.73 1.09 -74.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086559259.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.046 kcal (2) G-P(sol) polarization free energy of solvation -75.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds