Wall clock time and date at job start Wed Apr 1 2020 00:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38600 * 119.55040 * 2 1 4 4 C 1.38585 * 119.35127 * 179.97438 * 3 2 1 5 5 C 1.38628 * 118.48872 * 359.74723 * 4 3 2 6 6 C 1.39273 * 119.06041 * 0.47674 * 5 4 3 7 7 C 1.48169 * 119.72031 * 179.79229 * 6 5 4 8 8 O 1.21512 * 119.99979 * 4.59057 * 7 6 5 9 9 N 1.34777 * 119.99542 * 184.59405 * 7 6 5 10 10 C 1.49556 * 127.75803 * 354.71136 * 9 7 6 11 11 C 1.54383 * 103.92191 * 219.45298 * 10 9 7 12 12 H 1.08994 * 110.81794 * 216.08412 * 11 10 9 13 13 C 1.54164 * 105.49179 * 336.06878 * 11 10 9 14 14 H 1.09003 * 110.99291 * 240.22394 * 13 11 10 15 15 C 1.48152 * 127.83302 * 174.51665 * 9 7 6 16 16 C 1.54908 * 109.13485 * 116.30191 * 13 11 10 17 17 H 1.08995 * 110.59927 * 182.75417 * 16 13 11 18 18 C 1.53323 * 108.55401 * 60.83289 * 16 13 11 19 19 C 1.53400 * 109.53667 * 299.21397 * 18 16 13 20 20 C 1.52988 * 109.05515 * 93.91503 * 11 10 9 21 21 H 1.08994 * 109.63746 * 65.42576 * 20 11 10 22 22 C 1.53604 * 109.12398 * 305.33161 * 20 11 10 23 23 N 1.47646 * 106.74100 * 299.58909 * 22 20 11 24 24 C 1.36932 * 122.06570 * 180.02562 * 23 22 20 25 25 H 1.07997 * 119.99962 * 179.97438 * 24 23 22 26 26 C 1.38818 * 119.99884 * 359.72373 * 24 23 22 27 27 N 1.31611 * 120.00064 * 0.27547 * 26 24 23 28 28 Si 1.86802 * 119.99909 * 180.27367 * 26 24 23 29 29 H 1.48499 * 109.46949 * 89.99779 * 28 26 24 30 30 H 1.48496 * 109.47151 * 210.00561 * 28 26 24 31 31 H 1.48511 * 109.46848 * 330.00196 * 28 26 24 32 32 N 1.31502 * 119.54996 * 179.97438 * 2 1 3 33 33 H 1.08992 * 109.47303 * 270.01838 * 1 2 3 34 34 H 1.08998 * 109.46913 * 30.02559 * 1 2 3 35 35 H 1.09002 * 109.46720 * 150.02216 * 1 2 3 36 36 H 1.08001 * 120.32055 * 0.02562 * 3 2 1 37 37 H 1.07997 * 120.75359 * 179.97438 * 4 3 2 38 38 H 1.08002 * 120.46802 * 180.26383 * 5 4 3 39 39 H 1.08994 * 110.61896 * 100.95008 * 10 9 7 40 40 H 1.09008 * 110.85125 * 338.06819 * 10 9 7 41 41 H 1.09007 * 110.40845 * 21.68649 * 15 9 7 42 42 H 1.08995 * 110.41124 * 259.25515 * 15 9 7 43 43 H 1.09001 * 109.45044 * 59.36622 * 18 16 13 44 44 H 1.09001 * 109.44951 * 179.31403 * 18 16 13 45 45 H 1.08995 * 109.63264 * 240.74851 * 19 18 16 46 46 H 1.09000 * 109.26424 * 120.99639 * 19 18 16 47 47 H 1.08996 * 109.99916 * 180.28158 * 22 20 11 48 48 H 1.09000 * 110.07223 * 58.93704 * 22 20 11 49 49 H 0.97002 * 120.00336 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5764 1.2009 0.0005 5 6 4.2334 -0.0198 0.0064 6 6 3.4821 -1.1925 0.0015 7 6 4.1692 -2.5052 0.0030 8 8 5.3799 -2.5571 0.0928 9 7 3.4513 -3.6416 -0.0953 10 6 1.9629 -3.7866 -0.1044 11 6 1.7079 -5.0532 0.7406 12 1 0.8693 -5.6233 0.3409 13 6 3.0127 -5.8704 0.6618 14 1 2.8336 -6.8504 0.2192 15 6 3.9576 -5.0281 -0.2225 16 6 3.6314 -5.9772 2.0779 17 1 4.5816 -6.5098 2.0421 18 6 2.6340 -6.6972 2.9930 19 6 1.3322 -5.8893 3.0695 20 6 1.4418 -4.6416 2.1899 21 1 0.5140 -4.0723 2.2445 22 6 2.6086 -3.7765 2.6895 23 7 3.8244 -4.6094 2.6001 24 6 5.0560 -4.1402 2.9718 25 1 5.9234 -4.7787 2.8929 26 6 5.1903 -2.8422 3.4453 27 7 4.1331 -2.0643 3.5420 28 14 6.8716 -2.1997 3.9453 29 1 7.5320 -1.5751 2.7710 30 1 6.7151 -1.1885 5.0214 31 1 7.7042 -3.3251 4.4409 32 7 2.1556 -1.1440 0.0005 33 1 -0.3633 0.0003 1.0276 34 1 -0.3633 0.8897 -0.5142 35 1 -0.3633 -0.8902 -0.5135 36 1 1.6485 2.1398 0.0004 37 1 4.1319 2.1271 0.0001 38 1 5.3126 -0.0608 0.0113 39 1 1.5972 -3.9281 -1.1214 40 1 1.4858 -2.9207 0.3549 41 1 4.9817 -5.0941 0.1451 42 1 3.9032 -5.3590 -1.2596 43 1 2.4250 -7.6893 2.5928 44 1 3.0602 -6.7912 3.9918 45 1 1.1472 -5.5896 4.1009 46 1 0.5047 -6.5067 2.7199 47 1 2.4358 -3.4790 3.7238 48 1 2.7151 -2.8926 2.0606 49 1 4.2269 -1.1574 3.8732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087336106.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:48 Heat of formation + Delta-G solvation = 56.111573 kcal Electronic energy + Delta-G solvation = -33171.557223 eV Core-core repulsion = 29292.911153 eV Total energy + Delta-G solvation = -3878.646070 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.54826 -39.73340 -37.64535 -35.08016 -33.11630 -32.68555 -32.31060 -31.32008 -29.82040 -29.53706 -27.49129 -26.76553 -25.32652 -24.56407 -22.91011 -21.89689 -21.67726 -20.85137 -20.23788 -19.22951 -17.25126 -16.82212 -16.22270 -15.81471 -15.66963 -15.43582 -14.97660 -14.59850 -14.45549 -14.27225 -13.91114 -13.74646 -13.23659 -12.93815 -12.72557 -12.52178 -12.17799 -12.13903 -12.06969 -11.92090 -11.78446 -11.58968 -11.46342 -11.27895 -11.06413 -11.00463 -10.74900 -10.53519 -10.47583 -10.33991 -10.01689 -9.62503 -9.58695 -9.50372 -9.43302 -9.11759 -9.04149 -8.71030 -8.58025 -8.24577 -7.70239 -6.58951 -5.42745 -2.76220 1.15095 1.55692 3.46198 3.56773 3.59804 3.64885 3.70125 4.37052 4.54366 4.71881 4.88991 5.02388 5.20907 5.23260 5.29921 5.38134 5.43091 5.57864 5.64041 5.71348 5.76535 5.77346 5.82538 5.83437 5.85833 5.93271 5.96481 6.01334 6.12264 6.15599 6.20907 6.34843 6.38370 6.42116 6.47079 6.50392 6.57342 6.61926 6.70346 6.76033 6.85535 6.87377 6.93724 7.06589 7.15904 7.31620 7.85170 7.93922 8.15311 8.15900 8.45519 8.54621 9.09587 9.49466 10.11513 10.64160 11.61602 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009951 B = 0.007090 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.034162 B = 3948.008093 C = 5337.658039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.120 3.880 3 C -0.164 4.164 4 C -0.079 4.079 5 C -0.120 4.120 6 C 0.126 3.874 7 C 0.608 3.392 8 O -0.521 6.521 9 N -0.583 5.583 10 C 0.102 3.898 11 C -0.086 4.086 12 H 0.066 0.934 13 C -0.117 4.117 14 H 0.072 0.928 15 C 0.126 3.874 16 C 0.179 3.821 17 H 0.064 0.936 18 C -0.127 4.127 19 C -0.099 4.099 20 C -0.112 4.112 21 H 0.058 0.942 22 C 0.199 3.801 23 N -0.589 5.589 24 C -0.216 4.216 25 H 0.066 0.934 26 C 0.006 3.994 27 N -0.919 5.919 28 Si 0.895 3.105 29 H -0.288 1.288 30 H -0.297 1.297 31 H -0.287 1.287 32 N -0.450 5.450 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.049 0.951 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.041 0.959 47 H 0.038 0.962 48 H 0.068 0.932 49 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.808 0.893 -9.111 13.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.020 4.020 3 C -0.184 4.184 4 C -0.105 4.105 5 C -0.141 4.141 6 C -0.013 4.013 7 C 0.395 3.605 8 O -0.396 6.396 9 N -0.315 5.315 10 C -0.021 4.021 11 C -0.106 4.106 12 H 0.085 0.915 13 C -0.138 4.138 14 H 0.090 0.910 15 C 0.003 3.997 16 C 0.070 3.930 17 H 0.082 0.918 18 C -0.166 4.166 19 C -0.136 4.136 20 C -0.131 4.131 21 H 0.076 0.924 22 C 0.075 3.925 23 N -0.312 5.312 24 C -0.345 4.345 25 H 0.084 0.916 26 C -0.190 4.190 27 N -0.568 5.568 28 Si 0.727 3.273 29 H -0.215 1.215 30 H -0.224 1.224 31 H -0.213 1.213 32 N -0.163 5.163 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.158 0.842 39 H 0.068 0.932 40 H 0.136 0.864 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.085 0.915 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.459 0.374 -8.961 13.035 hybrid contribution 1.334 1.214 0.536 1.882 sum -8.124 1.588 -8.425 11.811 Atomic orbital electron populations 1.20678 0.88913 1.02992 1.03156 1.21289 0.96904 0.88373 0.95442 1.21982 0.94903 0.99038 1.02495 1.21478 0.94411 0.97974 0.96668 1.22015 1.02087 0.91989 0.98013 1.21153 0.89177 0.94363 0.96582 1.16944 0.85622 0.81623 0.76329 1.90746 1.13315 1.86023 1.49539 1.48478 1.07079 1.05036 1.70930 1.23038 0.81101 0.99800 0.98190 1.21997 0.96663 0.95677 0.96221 0.91549 1.23083 0.95031 0.97034 0.98653 0.90976 1.22082 0.99890 0.80980 0.96740 1.20860 0.95019 0.87737 0.89415 0.91794 1.22099 0.96701 0.97192 1.00650 1.21402 0.96540 0.96402 0.99292 1.21837 1.00683 0.97046 0.93573 0.92407 1.21241 0.81054 0.91002 0.99167 1.44451 1.04712 1.08062 1.73971 1.19046 0.84911 0.95891 1.34618 0.91622 1.24505 0.96270 0.96433 1.01752 1.70026 1.26199 1.07333 1.53245 0.86352 0.84905 0.78456 0.77544 1.21492 1.22429 1.21311 1.67524 1.08857 1.28562 1.11323 0.90334 0.91121 0.90567 0.85128 0.84819 0.84151 0.93244 0.86409 0.89821 0.93366 0.93672 0.92537 0.92941 0.93999 0.94373 0.91455 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.17 36.01 0.37 -0.71 16 2 C 0.12 1.78 6.78 -82.60 -0.56 1.22 16 3 C -0.16 -2.21 9.75 -39.32 -0.38 -2.59 16 4 C -0.08 -1.17 10.17 -39.31 -0.40 -1.57 16 5 C -0.12 -2.25 9.63 -39.05 -0.38 -2.63 16 6 C 0.13 2.58 6.43 -83.01 -0.53 2.04 16 7 C 0.61 13.90 6.87 -12.18 -0.08 13.82 16 8 O -0.52 -13.66 16.58 5.36 0.09 -13.57 16 9 N -0.58 -11.86 1.98 -169.10 -0.34 -12.20 16 10 C 0.10 1.77 5.26 -1.62 -0.01 1.76 16 11 C -0.09 -1.44 3.15 -89.29 -0.28 -1.72 16 12 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.12 -2.00 3.29 -88.26 -0.29 -2.29 16 14 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 15 C 0.13 2.37 6.19 -2.39 -0.01 2.35 16 16 C 0.18 3.57 2.92 -66.11 -0.19 3.38 16 17 H 0.06 1.30 7.99 -51.93 -0.42 0.88 16 18 C -0.13 -2.26 5.87 -26.36 -0.15 -2.41 16 19 C -0.10 -1.71 5.70 -26.50 -0.15 -1.86 16 20 C -0.11 -2.10 2.67 -90.29 -0.24 -2.34 16 21 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 22 C 0.20 4.72 3.64 -3.10 -0.01 4.71 16 23 N -0.59 -14.23 2.04 -162.18 -0.33 -14.56 16 24 C -0.22 -5.98 9.99 -15.06 -0.15 -6.13 16 25 H 0.07 1.85 7.79 -52.49 -0.41 1.44 16 26 C 0.01 0.16 5.47 -17.43 -0.10 0.07 16 27 N -0.92 -26.52 9.77 55.49 0.54 -25.98 16 28 Si 0.90 23.72 29.55 -169.99 -5.02 18.70 16 29 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 30 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 31 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 32 N -0.45 -8.13 6.58 -6.06 -0.04 -8.17 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.14 2.71 7.65 -52.49 -0.40 2.31 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.12 2.17 4.53 -51.92 -0.24 1.94 16 41 H 0.08 1.82 7.52 -51.92 -0.39 1.43 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.04 1.06 7.24 -51.93 -0.38 0.68 16 48 H 0.07 1.70 4.05 -51.93 -0.21 1.49 16 49 H 0.24 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -32.66 370.59 -10.56 -43.22 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.49 Total: 1.87 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -3.56 Total: 5.09 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.16 Total: -60.90 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -5.02 Total: 18.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.66 -10.56 -43.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087336106.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.336 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds