Wall clock time and date at job start Wed Apr 1 2020 00:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38352 * 119.46284 * 2 1 4 4 C 1.38356 * 119.30352 * 179.69442 * 3 2 1 5 5 C 1.40020 * 118.28971 * 0.53640 * 4 3 2 6 6 C 1.47841 * 120.56095 * 179.73309 * 5 4 3 7 7 O 1.21541 * 120.00093 * 156.10822 * 6 5 4 8 8 N 1.34778 * 119.99661 * 336.10805 * 6 5 4 9 9 C 1.48911 * 125.82654 * 182.56512 * 8 6 5 10 10 C 1.53167 * 105.30086 * 188.15287 * 9 8 6 11 11 H 1.09001 * 112.07800 * 84.88685 * 10 9 8 12 12 C 1.56628 * 98.10401 * 326.29231 * 10 9 8 13 13 H 1.08998 * 101.82430 * 300.91980 * 12 10 9 14 14 C 1.48704 * 102.06716 * 48.42766 * 12 10 9 15 15 C 1.48988 * 108.10524 * 190.78739 * 12 10 9 16 16 H 1.08996 * 114.02995 * 210.67449 * 15 12 10 17 17 C 1.56639 * 103.24464 * 85.98820 * 15 12 10 18 18 C 1.54301 * 104.76276 * 324.45206 * 17 15 12 19 19 C 1.53152 * 118.36029 * 217.58512 * 10 9 8 20 20 H 1.09003 * 112.65975 * 313.55703 * 19 10 9 21 21 C 1.55494 * 104.09519 * 190.25916 * 19 10 9 22 22 N 1.48928 * 104.22238 * 320.84119 * 21 19 10 23 23 C 1.36940 * 122.79533 * 145.81457 * 22 21 19 24 24 H 1.08005 * 120.00073 * 198.96775 * 23 22 21 25 25 C 1.38814 * 120.00311 * 19.24932 * 23 22 21 26 26 N 1.31621 * 119.99633 * 11.46680 * 25 23 22 27 27 Si 1.86795 * 120.00325 * 191.47058 * 25 23 22 28 28 H 1.48505 * 109.47110 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47231 * 119.99615 * 27 25 23 30 30 H 1.48500 * 109.46861 * 239.99798 * 27 25 23 31 31 C 1.39525 * 118.87937 * 359.46617 * 5 4 3 32 32 N 1.31687 * 120.56695 * 0.26784 * 31 5 4 33 33 H 1.08998 * 109.47717 * 270.02366 * 1 2 3 34 34 H 1.09005 * 109.47053 * 30.03074 * 1 2 3 35 35 H 1.09002 * 109.46756 * 150.02419 * 1 2 3 36 36 H 1.08001 * 120.34302 * 359.97438 * 3 2 1 37 37 H 1.08005 * 120.85272 * 180.30201 * 4 3 2 38 38 H 1.08999 * 110.28395 * 69.19360 * 9 8 6 39 39 H 1.09000 * 110.27660 * 307.10168 * 9 8 6 40 40 H 1.09004 * 110.97413 * 73.94107 * 14 12 10 41 41 H 1.09004 * 110.97674 * 197.71832 * 14 12 10 42 42 H 1.08999 * 110.22484 * 83.83584 * 17 15 12 43 43 H 1.09007 * 110.21888 * 205.81443 * 17 15 12 44 44 H 1.08992 * 109.16424 * 203.86472 * 18 17 15 45 45 H 1.08999 * 109.13617 * 84.22074 * 18 17 15 46 46 H 1.09000 * 111.55859 * 201.75908 * 21 19 10 47 47 H 1.09001 * 109.74717 * 79.01998 * 21 19 10 48 48 H 0.97002 * 119.99805 * 180.02562 * 26 25 23 49 49 H 1.07999 * 119.71241 * 180.28986 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0064 5 6 4.2312 -0.0340 0.0012 6 6 5.7083 -0.0967 0.0017 7 8 6.2745 -1.0859 0.4239 8 7 6.4270 0.9432 -0.4659 9 6 7.9111 0.9978 -0.5757 10 6 8.2349 2.4447 -0.9599 11 1 8.2969 3.0960 -0.0880 12 6 6.9695 2.7286 -1.8381 13 1 7.0566 1.9632 -2.6092 14 6 5.8691 2.2420 -0.9642 15 6 7.1822 4.0179 -2.5536 16 1 6.2651 4.5731 -2.7500 17 6 7.9664 3.5893 -3.8401 18 6 8.8787 2.4340 -3.3778 19 6 9.3789 2.6968 -1.9464 20 1 10.2754 2.1258 -1.7047 21 6 9.5932 4.2360 -1.8925 22 7 8.2155 4.7942 -1.8003 23 6 7.9202 5.9270 -1.0898 24 1 6.9015 6.1279 -0.7926 25 6 8.9293 6.8201 -0.7566 26 7 10.1193 6.7036 -1.3067 27 14 8.5984 8.1872 0.4726 28 1 7.1920 8.1013 0.9418 29 1 9.5166 8.0444 1.6309 30 1 8.8232 9.5030 -0.1781 31 6 3.4716 -1.2043 0.0011 32 7 2.1559 -1.1487 0.0006 33 1 -0.3634 0.0004 1.0276 34 1 -0.3633 0.8897 -0.5143 35 1 -0.3633 -0.8902 -0.5135 36 1 1.6443 2.1381 -0.0004 37 1 4.1275 2.1264 0.0115 38 1 8.2580 0.3145 -1.3508 39 1 8.3701 0.7493 0.3812 40 1 5.6914 2.9324 -0.1396 41 1 4.9571 2.0800 -1.5388 42 1 7.2721 3.2529 -4.6100 43 1 8.5669 4.4206 -4.2097 44 1 9.7312 2.3592 -4.0528 45 1 8.3141 1.5019 -3.4002 46 1 10.0916 4.6027 -2.7898 47 1 10.1682 4.4969 -1.0040 48 1 10.8246 7.3275 -1.0736 49 1 3.9669 -2.1640 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087338317.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:13 Heat of formation + Delta-G solvation = 68.362765 kcal Electronic energy + Delta-G solvation = -30786.487047 eV Core-core repulsion = 26908.372229 eV Total energy + Delta-G solvation = -3878.114818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.65638 -41.48164 -39.90426 -37.48745 -35.08617 -34.26214 -33.43109 -32.58098 -31.67780 -31.43981 -29.21759 -28.70492 -27.15603 -25.65482 -24.60240 -23.63426 -23.45229 -22.32953 -21.78185 -20.97528 -19.11755 -18.45299 -18.30236 -17.85257 -17.45482 -16.95203 -16.69519 -16.23911 -16.12187 -16.01080 -15.72667 -15.30507 -15.03237 -14.61953 -14.41185 -14.24202 -14.01881 -13.91748 -13.73240 -13.27506 -13.14691 -13.09789 -13.04535 -12.90231 -12.80443 -12.60700 -12.44882 -12.36671 -12.21213 -12.04287 -11.89640 -11.74702 -11.32310 -11.23913 -10.96776 -10.60882 -10.54747 -10.50157 -10.42114 -10.08194 -9.75075 -8.69383 -7.77949 -5.13810 -0.38195 0.17895 1.47622 1.50584 1.58316 1.66063 1.72527 2.54577 2.73096 3.08823 3.30737 3.39748 3.40958 3.51751 3.69525 3.78202 3.82130 3.91757 4.01061 4.09469 4.20571 4.27213 4.31526 4.33788 4.49042 4.51391 4.57976 4.67974 4.71183 4.71872 4.81559 4.81814 4.84345 4.92914 4.97246 4.98520 5.05048 5.07512 5.10936 5.19358 5.21348 5.30766 5.45719 5.48419 5.60860 5.62464 5.65407 5.73239 5.86581 6.33129 6.34508 6.85474 6.94180 7.18184 7.87146 8.48797 9.31060 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.003314 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.678858 B = 8446.595686 C = 9464.442225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.138 3.862 3 C -0.170 4.170 4 C -0.052 4.052 5 C -0.201 4.201 6 C 0.576 3.424 7 O -0.581 6.581 8 N -0.613 5.613 9 C 0.123 3.877 10 C -0.075 4.075 11 H 0.067 0.933 12 C -0.141 4.141 13 H 0.081 0.919 14 C 0.125 3.875 15 C 0.184 3.816 16 H 0.088 0.912 17 C -0.126 4.126 18 C -0.105 4.105 19 C -0.099 4.099 20 H 0.086 0.914 21 C 0.200 3.800 22 N -0.611 5.611 23 C -0.232 4.232 24 H 0.077 0.923 25 C -0.061 4.061 26 N -0.945 5.945 27 Si 0.958 3.042 28 H -0.264 1.264 29 H -0.301 1.301 30 H -0.299 1.299 31 C 0.151 3.849 32 N -0.510 5.510 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.177 0.823 37 H 0.166 0.834 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.008 0.992 47 H 0.028 0.972 48 H 0.243 0.757 49 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.221 -11.118 -1.964 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.001 3.999 3 C -0.190 4.190 4 C -0.077 4.077 5 C -0.206 4.206 6 C 0.366 3.634 7 O -0.463 6.463 8 N -0.345 5.345 9 C 0.001 3.999 10 C -0.095 4.095 11 H 0.085 0.915 12 C -0.161 4.161 13 H 0.099 0.901 14 C 0.005 3.995 15 C 0.077 3.923 16 H 0.106 0.894 17 C -0.164 4.164 18 C -0.142 4.142 19 C -0.119 4.119 20 H 0.104 0.896 21 C 0.075 3.925 22 N -0.335 5.335 23 C -0.363 4.363 24 H 0.095 0.905 25 C -0.254 4.254 26 N -0.594 5.594 27 Si 0.789 3.211 28 H -0.188 1.188 29 H -0.229 1.229 30 H -0.227 1.227 31 C -0.007 4.007 32 N -0.219 5.219 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.194 0.806 37 H 0.183 0.817 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.026 0.974 47 H 0.046 0.954 48 H 0.052 0.948 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.337 -12.347 -1.686 20.547 hybrid contribution 1.447 1.788 0.838 2.448 sum -14.891 -10.559 -0.848 18.274 Atomic orbital electron populations 1.20904 0.86042 1.04929 1.04393 1.22225 0.99013 0.88164 0.90490 1.22345 0.93939 1.00707 1.01973 1.22652 0.95755 0.97940 0.91371 1.20756 0.92858 0.96685 1.10317 1.18064 0.86956 0.81495 0.76933 1.90745 1.72975 1.33196 1.49370 1.49661 1.07617 1.15396 1.61875 1.21897 0.79202 0.97518 1.01265 1.22199 0.96580 0.92857 0.97846 0.91471 1.22008 0.94679 1.00620 0.98806 0.90140 1.21555 0.97167 0.83044 0.97729 1.20915 0.92230 0.89408 0.89697 0.89419 1.23042 0.98404 0.97628 0.97325 1.21973 0.99078 0.98158 0.95034 1.22311 0.97371 0.97670 0.94550 0.89579 1.21323 0.85597 0.88001 0.97558 1.45785 1.03735 1.26980 1.57011 1.19556 0.94261 0.97241 1.25209 0.90512 1.25552 0.96934 1.00342 1.02615 1.70143 1.03644 1.39470 1.46135 0.85312 0.77691 0.79373 0.78773 1.18818 1.22901 1.22693 1.22887 0.89042 0.97872 0.90941 1.67677 1.09105 1.30459 1.14698 0.88913 0.87830 0.90494 0.80593 0.81681 0.90596 0.92115 0.90310 0.87525 0.89731 0.93718 0.91977 0.90729 0.97439 0.95365 0.94791 0.82231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.16 71.24 0.72 -0.31 16 2 C 0.14 2.38 6.78 42.57 0.29 2.66 16 3 C -0.17 -2.53 9.72 22.32 0.22 -2.31 16 4 C -0.05 -0.98 8.15 22.73 0.19 -0.79 16 5 C -0.20 -4.94 5.78 -19.99 -0.12 -5.06 16 6 C 0.58 17.18 7.71 86.78 0.67 17.85 16 7 O -0.58 -21.32 16.96 -3.85 -0.07 -21.38 16 8 N -0.61 -16.85 3.40 -817.47 -2.78 -19.63 16 9 C 0.12 3.55 6.40 85.97 0.55 4.10 16 10 C -0.08 -2.39 2.65 -9.42 -0.02 -2.42 16 11 H 0.07 2.63 7.60 -2.39 -0.02 2.61 16 12 C -0.14 -3.89 2.53 -12.16 -0.03 -3.92 16 13 H 0.08 2.07 4.31 -2.39 -0.01 2.06 16 14 C 0.13 2.95 4.79 84.36 0.40 3.36 16 15 C 0.18 6.09 4.53 44.39 0.20 6.29 16 16 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 17 C -0.13 -3.80 5.68 32.31 0.18 -3.62 16 18 C -0.11 -2.95 5.24 31.34 0.16 -2.79 16 19 C -0.10 -3.29 3.91 -9.58 -0.04 -3.32 16 20 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 21 C 0.20 8.90 4.04 86.77 0.35 9.25 16 22 N -0.61 -26.96 2.18 -659.44 -1.44 -28.40 16 23 C -0.23 -11.68 10.02 84.03 0.84 -10.84 16 24 H 0.08 3.68 7.86 -2.91 -0.02 3.66 16 25 C -0.06 -3.25 5.23 84.86 0.44 -2.80 16 26 N -0.95 -54.30 10.83 21.65 0.23 -54.07 16 27 Si 0.96 43.79 29.57 68.60 2.03 45.81 16 28 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 29 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 30 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 31 C 0.15 3.72 10.76 85.03 0.92 4.64 16 32 N -0.51 -11.66 10.25 -182.82 -1.87 -13.54 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.10 0.51 8.07 -2.38 -0.02 0.49 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.17 2.75 4.40 -2.91 -0.01 2.73 16 38 H 0.08 2.08 7.99 -2.39 -0.02 2.06 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 1.88 7.31 -2.39 -0.02 1.86 16 41 H 0.11 1.96 6.32 -2.39 -0.02 1.95 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.04 1.65 7.26 -2.38 -0.02 1.63 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 1.81 6.31 -2.39 -0.02 1.80 16 46 H 0.01 0.38 7.22 -2.39 -0.02 0.36 16 47 H 0.03 1.46 6.86 -2.39 -0.02 1.45 16 48 H 0.24 13.80 8.31 -92.71 -0.77 13.03 16 49 H 0.16 3.93 7.84 -2.91 -0.02 3.90 16 Total: -1.00 -68.04 371.31 3.00 -65.04 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.97 Total: 16.19 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.93 Total: 9.97 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -5.86 Total: -115.63 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.07 Total: -21.38 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -68.04 3.00 -65.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087338317.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.404 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds