Wall clock time and date at job start Wed Apr 1 2020 00:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.38355 * 120.34951 * 2 1 4 4 N 1.31924 * 121.08246 * 180.02562 * 3 2 1 5 5 C 1.31699 * 121.87860 * 0.02562 * 4 3 2 6 6 C 1.39515 * 120.56514 * 359.97438 * 5 4 3 7 7 C 1.47849 * 120.55762 * 180.02562 * 6 5 4 8 8 O 1.21549 * 119.99988 * 214.31110 * 7 6 5 9 9 N 1.34777 * 119.99667 * 34.30613 * 7 6 5 10 10 C 1.49767 * 125.91921 * 184.03879 * 9 7 6 11 11 C 1.50621 * 102.37247 * 155.81017 * 10 9 7 12 12 H 1.09007 * 107.41826 * 291.36873 * 11 10 9 13 13 C 1.55961 * 99.98786 * 43.34312 * 11 10 9 14 14 H 1.08998 * 107.82708 * 65.68432 * 13 11 10 15 15 C 1.48382 * 126.09685 * 3.26764 * 9 7 6 16 16 C 1.51403 * 105.01764 * 181.14964 * 13 11 10 17 17 H 1.09002 * 114.28816 * 154.48228 * 16 13 11 18 18 C 1.54932 * 107.70208 * 25.83816 * 16 13 11 19 19 C 1.54240 * 108.57610 * 285.62142 * 18 16 13 20 20 C 1.50452 * 125.96460 * 162.18391 * 11 10 9 21 21 H 1.09000 * 114.01475 * 36.25125 * 20 11 10 22 22 C 1.55339 * 108.69565 * 268.41532 * 20 11 10 23 23 N 1.48456 * 106.49313 * 290.17977 * 22 20 11 24 24 C 1.36936 * 123.54416 * 215.52410 * 23 22 20 25 25 H 1.08001 * 119.99430 * 150.66670 * 24 23 22 26 26 C 1.38808 * 120.00197 * 330.66610 * 24 23 22 27 27 N 1.31624 * 120.00022 * 162.62895 * 26 24 23 28 28 Si 1.86803 * 120.00201 * 342.62486 * 26 24 23 29 29 H 1.48500 * 109.46552 * 85.38657 * 28 26 24 30 30 H 1.48496 * 109.47178 * 205.38588 * 28 26 24 31 31 H 1.48497 * 109.47067 * 325.38712 * 28 26 24 32 32 C 1.38357 * 120.35134 * 180.30259 * 2 1 3 33 33 H 1.08998 * 109.47193 * 90.00175 * 1 2 3 34 34 H 1.09004 * 109.47072 * 210.00064 * 1 2 3 35 35 H 1.08998 * 109.47334 * 329.99959 * 1 2 3 36 36 H 1.08008 * 119.45873 * 0.02562 * 3 2 1 37 37 H 1.07999 * 119.71129 * 180.02562 * 5 4 3 38 38 H 1.09004 * 110.82948 * 37.59208 * 10 9 7 39 39 H 1.09002 * 111.00032 * 274.10524 * 10 9 7 40 40 H 1.09001 * 109.86736 * 54.75026 * 15 9 7 41 41 H 1.09002 * 110.41775 * 292.72159 * 15 9 7 42 42 H 1.09001 * 109.61758 * 165.89626 * 18 16 13 43 43 H 1.08998 * 109.62407 * 45.35604 * 18 16 13 44 44 H 1.08994 * 110.06545 * 279.21516 * 19 18 16 45 45 H 1.08997 * 110.06502 * 157.64347 * 19 18 16 46 46 H 1.09002 * 110.04144 * 49.42679 * 22 20 11 47 47 H 1.09000 * 110.03838 * 170.82909 * 22 20 11 48 48 H 0.96998 * 120.00310 * 179.97438 * 27 26 24 49 49 H 1.08001 * 120.85413 * 0.02562 * 32 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5251 1.2108 -0.0005 5 6 4.2349 0.1015 -0.0015 6 6 3.6053 -1.1436 -0.0016 7 6 4.4023 -2.3889 -0.0022 8 8 3.9974 -3.3693 -0.5956 9 7 5.5779 -2.4368 0.6553 10 6 6.5286 -3.5939 0.6720 11 6 7.8420 -2.9279 0.9883 12 1 8.1185 -2.3246 0.1235 13 6 7.3852 -1.9497 2.1138 14 1 7.0670 -2.5483 2.9673 15 6 6.1656 -1.3491 1.4758 16 6 8.6346 -1.1881 2.5027 17 1 8.4447 -0.2040 2.9313 18 6 9.5858 -1.1877 1.2797 19 6 10.2106 -2.5913 1.1428 20 6 9.0804 -3.6137 1.4977 21 1 9.2386 -4.6092 1.0830 22 6 9.0638 -3.5825 3.0507 23 7 9.2832 -2.1685 3.4462 24 6 9.9989 -1.7944 4.5521 25 1 10.5260 -0.8518 4.5607 26 6 10.0468 -2.6266 5.6620 27 7 10.9805 -2.4547 6.5737 28 14 8.7861 -3.9906 5.8619 29 1 9.2412 -5.1970 5.1252 30 1 8.6352 -4.3179 7.3025 31 1 7.4800 -3.5411 5.3169 32 6 2.2060 -1.1939 -0.0063 33 1 -0.3633 0.0000 -1.0276 34 1 -0.3633 -0.8900 0.5139 35 1 -0.3634 0.8900 0.5138 36 1 1.6628 2.1275 0.0004 37 1 5.3135 0.1561 -0.0015 38 1 6.5653 -4.0795 -0.3032 39 1 6.2598 -4.3091 1.4494 40 1 5.4537 -1.0348 2.2390 41 1 6.4442 -0.5050 0.8449 42 1 10.3737 -0.4494 1.4292 43 1 9.0226 -0.9482 0.3779 44 1 11.0439 -2.6990 1.8370 45 1 10.5514 -2.7507 0.1198 46 1 8.0988 -3.9286 3.4210 47 1 9.8622 -4.2108 3.4455 48 1 11.0138 -3.0360 7.3495 49 1 1.6858 -2.1404 -0.0117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087346017.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:04 Heat of formation + Delta-G solvation = 59.636592 kcal Electronic energy + Delta-G solvation = -30819.205087 eV Core-core repulsion = 26940.711874 eV Total energy + Delta-G solvation = -3878.493213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -42.81395 -41.52642 -39.95724 -37.61236 -35.09536 -34.65132 -33.51649 -32.81127 -32.23184 -31.40077 -29.42027 -28.20014 -27.44326 -25.98723 -24.39110 -23.92329 -23.57177 -22.53466 -21.96775 -20.70435 -19.28144 -18.48171 -18.44609 -18.03049 -17.74994 -17.42797 -17.08699 -16.46841 -16.16877 -15.92279 -15.75165 -15.26103 -15.04971 -14.75858 -14.41698 -14.33376 -14.11490 -14.04168 -13.85416 -13.61995 -13.46491 -13.36760 -13.28120 -13.14906 -12.82198 -12.76902 -12.45883 -12.40416 -12.35212 -12.14563 -11.96635 -11.67999 -11.46895 -11.23767 -11.05643 -10.90473 -10.77888 -10.49849 -10.42064 -10.01483 -9.81429 -8.81413 -8.15905 -5.47700 -0.37392 0.12641 1.28073 1.36767 1.43961 1.53507 1.68589 2.41034 2.70457 2.98489 3.04032 3.15638 3.29006 3.44756 3.58349 3.75921 3.78164 3.87010 3.89420 4.01057 4.09702 4.15343 4.22835 4.31357 4.33290 4.37220 4.51763 4.55759 4.57445 4.66887 4.73756 4.73811 4.77966 4.81613 4.83936 4.88990 4.90065 4.96606 5.04873 5.14073 5.15739 5.21579 5.27396 5.32873 5.46876 5.51524 5.57708 5.65133 5.84355 6.17979 6.27521 6.78706 6.81909 6.88472 7.56963 8.12755 9.05146 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.003182 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.176403 B = 8796.881743 C = 9034.823361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.137 4.137 3 C 0.115 3.885 4 N -0.499 5.499 5 C 0.118 3.882 6 C -0.190 4.190 7 C 0.581 3.419 8 O -0.574 6.574 9 N -0.614 5.614 10 C 0.126 3.874 11 C -0.104 4.104 12 H 0.104 0.896 13 C -0.127 4.127 14 H 0.057 0.943 15 C 0.123 3.877 16 C 0.177 3.823 17 H 0.090 0.910 18 C -0.120 4.120 19 C -0.094 4.094 20 C -0.078 4.078 21 H 0.111 0.889 22 C 0.121 3.879 23 N -0.621 5.621 24 C -0.222 4.222 25 H 0.056 0.944 26 C -0.033 4.033 27 N -0.961 5.961 28 Si 0.942 3.058 29 H -0.275 1.275 30 H -0.316 1.316 31 H -0.270 1.270 32 C -0.038 4.038 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.191 0.809 37 H 0.176 0.824 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.041 0.959 45 H 0.079 0.921 46 H 0.016 0.984 47 H 0.041 0.959 48 H 0.259 0.741 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.113 4.981 -17.699 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C -0.041 4.041 4 N -0.207 5.207 5 C -0.039 4.039 6 C -0.195 4.195 7 C 0.370 3.630 8 O -0.455 6.455 9 N -0.346 5.346 10 C 0.005 3.995 11 C -0.123 4.123 12 H 0.122 0.878 13 C -0.147 4.147 14 H 0.075 0.925 15 C 0.001 3.999 16 C 0.073 3.927 17 H 0.108 0.892 18 C -0.159 4.159 19 C -0.132 4.132 20 C -0.098 4.098 21 H 0.129 0.871 22 C -0.004 4.004 23 N -0.347 5.347 24 C -0.352 4.352 25 H 0.073 0.927 26 C -0.227 4.227 27 N -0.608 5.608 28 Si 0.772 3.228 29 H -0.201 1.201 30 H -0.245 1.245 31 H -0.196 1.196 32 C -0.064 4.064 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.207 0.793 37 H 0.193 0.807 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.034 0.966 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.868 5.249 -17.853 25.798 hybrid contribution -0.461 -1.817 1.267 2.263 sum -18.328 3.432 -16.586 24.956 Atomic orbital electron populations 1.20819 0.87207 1.04564 1.03928 1.21231 0.99611 0.92746 1.00347 1.23495 0.89562 0.99088 0.91987 1.67806 1.09153 1.30783 1.12936 1.23487 1.01500 0.86215 0.92689 1.20851 0.95459 0.94253 1.08908 1.17983 0.79676 0.87429 0.77901 1.90759 1.70458 1.37924 1.46363 1.49449 1.19031 1.17485 1.48667 1.21551 0.87453 0.88138 1.02388 1.21684 0.93155 0.98059 0.99366 0.87839 1.22211 0.94838 0.99235 0.98430 0.92486 1.21432 0.94317 0.89920 0.94231 1.21593 0.88664 0.92722 0.89759 0.89241 1.22600 0.98648 0.96988 0.97669 1.22264 0.96495 0.94107 1.00294 1.21955 0.94298 0.99827 0.93683 0.87123 1.22072 0.97127 0.86067 0.95098 1.46101 1.60399 1.00929 1.27311 1.18693 1.20750 1.05036 0.90717 0.92652 1.25880 0.99640 1.01331 0.95851 1.69923 1.34929 1.42258 1.13708 0.85986 0.81465 0.80585 0.74761 1.20103 1.24511 1.19583 1.21748 0.91987 0.99939 0.92755 0.89463 0.90797 0.88971 0.79254 0.80696 0.89173 0.92102 0.90789 0.87981 0.92933 0.89417 0.93960 0.90267 0.96629 0.94096 0.93181 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.03 71.23 0.71 -0.11 16 2 C -0.14 -2.00 5.89 -19.81 -0.12 -2.12 16 3 C 0.12 1.74 10.85 84.71 0.92 2.66 16 4 N -0.50 -10.03 10.35 -194.75 -2.01 -12.04 16 5 C 0.12 2.42 9.75 85.02 0.83 3.24 16 6 C -0.19 -4.31 5.62 -19.99 -0.11 -4.42 16 7 C 0.58 15.76 7.58 86.79 0.66 16.42 16 8 O -0.57 -19.24 17.22 -3.87 -0.07 -19.31 16 9 N -0.61 -15.23 3.41 -821.37 -2.80 -18.04 16 10 C 0.13 3.11 6.82 84.97 0.58 3.69 16 11 C -0.10 -2.54 2.10 -11.36 -0.02 -2.56 16 12 H 0.10 2.17 5.56 -2.38 -0.01 2.16 16 13 C -0.13 -3.59 2.15 -11.20 -0.02 -3.61 16 14 H 0.06 2.03 6.00 -2.39 -0.01 2.01 16 15 C 0.12 2.76 5.17 85.10 0.44 3.20 16 16 C 0.18 5.78 4.66 44.30 0.21 5.98 16 17 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 18 C -0.12 -3.26 5.62 31.68 0.18 -3.08 16 19 C -0.09 -2.66 5.59 32.23 0.18 -2.48 16 20 C -0.08 -2.20 4.41 -9.60 -0.04 -2.25 16 21 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 22 C 0.12 4.75 3.20 86.81 0.28 5.02 16 23 N -0.62 -26.87 1.82 -657.30 -1.19 -28.06 16 24 C -0.22 -12.09 10.44 84.03 0.88 -11.22 16 25 H 0.06 3.30 8.06 -2.91 -0.02 3.28 16 26 C -0.03 -1.88 5.38 84.86 0.46 -1.42 16 27 N -0.96 -60.20 13.97 21.65 0.30 -59.90 16 28 Si 0.94 46.91 24.26 68.60 1.66 48.58 16 29 H -0.27 -12.99 6.59 99.48 0.66 -12.34 16 30 H -0.32 -16.23 7.11 99.48 0.71 -15.53 16 31 H -0.27 -13.02 6.73 99.48 0.67 -12.35 16 32 C -0.04 -0.75 9.43 22.73 0.21 -0.53 16 33 H 0.09 0.51 8.14 -2.39 -0.02 0.50 16 34 H 0.07 0.56 8.10 -2.38 -0.02 0.54 16 35 H 0.09 0.39 8.09 -2.39 -0.02 0.37 16 36 H 0.19 1.55 8.06 -2.91 -0.02 1.52 16 37 H 0.18 3.05 5.06 -2.91 -0.01 3.03 16 38 H 0.09 2.10 8.13 -2.38 -0.02 2.08 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 41 H 0.10 1.77 5.78 -2.39 -0.01 1.75 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.79 6.47 -2.39 -0.02 1.77 16 44 H 0.04 1.52 7.61 -2.39 -0.02 1.50 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.02 0.66 4.69 -2.39 -0.01 0.65 16 47 H 0.04 1.81 6.41 -2.39 -0.02 1.80 16 48 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 49 H 0.14 2.70 8.04 -2.91 -0.02 2.68 16 Total: -1.00 -73.01 367.47 2.98 -70.04 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.88 Total: 12.32 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 6.21 Total: 6.41 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -5.71 Total: -118.04 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.07 Total: -19.31 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.66 Total: 48.58 kcal Total: -73.01 2.98 -70.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087346017.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.674 kcal (2) G-P(sol) polarization free energy of solvation -73.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds