Wall clock time and date at job start Wed Apr 1 2020 00:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38631 * 120.47556 * 2 1 4 4 C 1.38580 * 118.49115 * 180.27882 * 3 2 1 5 5 C 1.38609 * 119.34986 * 359.73366 * 4 3 2 6 6 N 1.31497 * 120.90122 * 359.97438 * 5 4 3 7 7 C 1.32747 * 121.64272 * 359.97438 * 6 5 4 8 8 C 1.48162 * 119.72158 * 179.97438 * 7 6 5 9 9 O 1.21518 * 119.99967 * 104.58887 * 8 7 6 10 10 N 1.34780 * 120.00432 * 284.59111 * 8 7 6 11 11 C 1.48163 * 127.83078 * 355.04639 * 10 8 7 12 12 C 1.54381 * 104.55697 * 140.33709 * 11 10 8 13 13 H 1.08999 * 111.45241 * 263.88416 * 12 11 10 14 14 C 1.54164 * 105.00905 * 24.07928 * 12 11 10 15 15 H 1.08999 * 110.86681 * 239.35312 * 14 12 11 16 16 C 1.48138 * 127.83911 * 175.01217 * 10 8 7 17 17 C 1.53027 * 109.72044 * 116.63135 * 14 12 11 18 18 H 1.08992 * 110.12930 * 180.02562 * 17 14 12 19 19 C 1.53042 * 109.19823 * 300.51980 * 17 14 12 20 20 C 1.52932 * 110.00615 * 59.21425 * 19 17 14 21 21 C 1.53230 * 108.96706 * 141.20020 * 12 11 10 22 22 H 1.09005 * 110.93809 * 67.63379 * 21 12 11 23 23 N 1.47693 * 108.04693 * 188.89985 * 21 12 11 24 24 C 1.36928 * 122.07600 * 238.60427 * 23 21 12 25 25 H 1.08000 * 120.00253 * 359.97438 * 24 23 21 26 26 C 1.38816 * 120.00186 * 179.72769 * 24 23 21 27 27 N 1.31620 * 119.99428 * 0.27423 * 26 24 23 28 28 Si 1.86798 * 120.00400 * 180.27695 * 26 24 23 29 29 H 1.48501 * 109.47183 * 359.97438 * 28 26 24 30 30 H 1.48496 * 109.47274 * 120.00015 * 28 26 24 31 31 H 1.48507 * 109.46756 * 239.99874 * 28 26 24 32 32 C 1.47644 * 115.84531 * 58.87511 * 23 21 12 33 33 H 1.08997 * 109.47758 * 275.03769 * 1 2 3 34 34 H 1.09007 * 109.46470 * 35.03392 * 1 2 3 35 35 H 1.09001 * 109.46984 * 155.02928 * 1 2 3 36 36 H 1.07996 * 120.75171 * 0.03535 * 3 2 1 37 37 H 1.07998 * 120.32569 * 179.70345 * 4 3 2 38 38 H 1.08000 * 119.54818 * 179.97438 * 5 4 3 39 39 H 1.08999 * 110.42007 * 21.57026 * 11 10 8 40 40 H 1.08994 * 110.41926 * 259.10051 * 11 10 8 41 41 H 1.09000 * 110.40804 * 100.70583 * 16 10 8 42 42 H 1.09003 * 110.40041 * 338.28961 * 16 10 8 43 43 H 1.08997 * 109.37431 * 299.05339 * 19 17 14 44 44 H 1.08997 * 109.37683 * 179.38400 * 19 17 14 45 45 H 1.08995 * 109.45258 * 240.85787 * 20 19 17 46 46 H 1.09000 * 109.42600 * 120.92051 * 20 19 17 47 47 H 0.97001 * 119.99854 * 180.02562 * 27 26 24 48 48 H 1.08996 * 109.98893 * 119.45957 * 32 23 21 49 49 H 1.08994 * 109.99355 * 240.83623 * 32 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1948 0.0000 4 6 3.5950 1.1468 -0.0059 5 6 4.2322 -0.0842 -0.0060 6 7 3.5406 -1.2025 -0.0001 7 6 2.2131 -1.2005 0.0067 8 6 1.4766 -2.4860 0.0127 9 8 0.9497 -2.8797 1.0345 10 7 1.3908 -3.2189 -1.1152 11 6 1.8745 -2.8624 -2.4695 12 6 2.4602 -4.1760 -3.0305 13 1 3.5390 -4.2267 -2.8827 14 6 1.7441 -5.2972 -2.2517 15 1 2.4621 -5.9150 -1.7123 16 6 0.7923 -4.5637 -1.2818 17 6 0.9128 -6.1462 -3.2161 18 1 0.4029 -6.9411 -2.6720 19 6 -0.1182 -5.2540 -3.9113 20 6 0.5895 -4.1352 -4.6769 21 6 2.1071 -4.2836 -4.5177 22 1 2.6280 -3.5218 -5.0979 23 7 2.4843 -5.6343 -4.9810 24 6 3.3749 -5.8304 -6.0025 25 1 3.8251 -4.9821 -6.4967 26 6 3.7029 -7.1194 -6.3995 27 7 3.1538 -8.1531 -5.7976 28 14 4.9237 -7.3871 -7.7879 29 1 5.3930 -6.0725 -8.2947 30 1 6.0830 -8.1665 -7.2843 31 1 4.2650 -8.1350 -8.8888 32 6 1.8368 -6.7599 -4.2784 33 1 -0.3634 0.0902 1.0236 34 1 -0.3632 0.8415 -0.5900 35 1 -0.3633 -0.9316 -0.4338 36 1 1.6903 2.1414 0.0006 37 1 4.1723 2.0596 -0.0109 38 1 5.3114 -0.1253 -0.0111 39 1 2.6480 -2.0970 -2.4078 40 1 1.0472 -2.5192 -3.0906 41 1 -0.2049 -4.4849 -1.7149 42 1 0.7516 -5.0828 -0.3241 43 1 -0.7812 -4.8178 -3.1642 44 1 -0.7048 -5.8538 -4.6071 45 1 0.2757 -3.1695 -4.2809 46 1 0.3275 -4.1969 -5.7332 47 1 3.3833 -9.0539 -6.0747 48 1 1.2551 -7.3539 -4.9833 49 1 2.5912 -7.3828 -3.7980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087348317.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:35 Heat of formation + Delta-G solvation = 45.786690 kcal Electronic energy + Delta-G solvation = -31078.037201 eV Core-core repulsion = 27198.943411 eV Total energy + Delta-G solvation = -3879.093790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -41.10104 -40.35991 -38.51437 -35.77637 -33.92289 -33.26869 -32.35122 -31.72108 -30.19173 -29.88974 -27.94199 -27.34584 -25.57106 -24.92697 -23.39052 -22.43077 -22.00970 -21.01546 -20.76170 -19.88702 -17.79631 -17.19057 -17.03387 -16.49142 -16.19293 -15.78326 -15.43460 -14.87882 -14.76383 -14.53368 -14.43811 -14.04628 -13.78042 -13.53793 -13.35974 -13.02731 -12.81784 -12.73359 -12.41580 -12.24508 -12.21900 -12.14014 -11.96663 -11.50366 -11.29082 -11.13436 -10.92546 -10.78246 -10.56155 -10.48323 -10.27190 -10.13628 -10.07009 -9.83747 -9.65813 -9.56762 -9.32025 -9.21499 -9.17650 -8.55727 -8.48916 -6.84644 -5.65597 -3.02427 0.64013 0.95794 2.45197 2.89946 3.39895 3.45335 3.45825 3.48009 4.11530 4.36037 4.46846 4.48650 4.65201 4.68043 4.90850 4.95109 5.07720 5.12813 5.24335 5.31415 5.33267 5.34569 5.41457 5.48944 5.56601 5.61959 5.69913 5.71216 5.76586 5.78078 5.80526 5.87456 6.02023 6.08660 6.13842 6.16370 6.21397 6.30350 6.36316 6.48437 6.51683 6.68894 6.76996 6.86861 6.94519 7.01408 7.56566 7.62050 7.64751 7.71515 7.91929 8.07288 8.32690 9.26523 9.87395 10.41438 11.39740 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.003243 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.530207 B = 8631.125709 C = 9457.640572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.078 4.078 4 C -0.158 4.158 5 C 0.096 3.904 6 N -0.450 5.450 7 C 0.101 3.899 8 C 0.597 3.403 9 O -0.536 6.536 10 N -0.604 5.604 11 C 0.099 3.901 12 C -0.103 4.103 13 H 0.081 0.919 14 C -0.078 4.078 15 H 0.078 0.922 16 C 0.103 3.897 17 C -0.110 4.110 18 H 0.066 0.934 19 C -0.106 4.106 20 C -0.134 4.134 21 C 0.181 3.819 22 H 0.067 0.933 23 N -0.599 5.599 24 C -0.234 4.234 25 H 0.075 0.925 26 C -0.008 4.008 27 N -0.922 5.922 28 Si 0.908 3.092 29 H -0.281 1.281 30 H -0.292 1.292 31 H -0.292 1.292 32 C 0.203 3.797 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.163 0.837 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.250 0.750 48 H 0.052 0.948 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 17.864 9.649 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.104 4.104 3 C -0.104 4.104 4 C -0.178 4.178 5 C -0.063 4.063 6 N -0.160 5.160 7 C -0.039 4.039 8 C 0.383 3.617 9 O -0.412 6.412 10 N -0.336 5.336 11 C -0.024 4.024 12 C -0.124 4.124 13 H 0.100 0.900 14 C -0.097 4.097 15 H 0.097 0.903 16 C -0.018 4.018 17 C -0.130 4.130 18 H 0.085 0.915 19 C -0.143 4.143 20 C -0.174 4.174 21 C 0.072 3.928 22 H 0.085 0.915 23 N -0.323 5.323 24 C -0.363 4.363 25 H 0.093 0.907 26 C -0.204 4.204 27 N -0.570 5.570 28 Si 0.739 3.261 29 H -0.206 1.206 30 H -0.219 1.219 31 H -0.219 1.219 32 C 0.079 3.921 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.180 0.820 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.707 16.681 10.199 20.110 hybrid contribution 0.466 0.636 -0.732 1.076 sum -4.240 17.317 9.467 20.186 Atomic orbital electron populations 1.20800 0.89669 1.03397 1.03275 1.20819 0.97769 0.92688 0.99102 1.21446 0.94190 0.97832 0.96951 1.22323 0.95223 0.99819 1.00398 1.22855 1.00554 0.87232 0.95636 1.67665 1.06517 1.31746 1.10091 1.20916 0.90370 0.93160 0.99411 1.17382 0.79492 0.82418 0.82362 1.90796 1.47960 1.70701 1.31738 1.48914 1.57582 1.18762 1.08372 1.22872 0.99069 0.98718 0.81756 1.22669 1.00069 0.91884 0.97818 0.90036 1.21934 0.96524 0.96220 0.95032 0.90349 1.22783 0.97419 0.81537 1.00109 1.21809 0.97032 0.96774 0.97367 0.91527 1.21484 0.97196 0.97211 0.98414 1.22188 0.98075 0.96925 1.00177 1.20502 0.92414 0.89156 0.90749 0.91458 1.44615 1.49732 0.99099 1.38816 1.19313 1.16468 0.92217 1.08286 0.90727 1.24779 1.00269 0.95587 0.99730 1.70034 1.46241 0.97521 1.43221 0.86104 0.80709 0.77613 0.81681 1.20629 1.21874 1.21899 1.21113 0.92761 0.87851 0.90364 0.90115 0.90639 0.91195 0.84205 0.84268 0.82027 0.91244 0.89894 0.90023 0.90534 0.93231 0.92432 0.93069 0.92095 0.93935 0.93003 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.71 36.01 0.35 -0.71 16 2 C -0.10 -1.12 5.93 -104.09 -0.62 -1.74 16 3 C -0.08 -0.66 9.87 -39.31 -0.39 -1.04 16 4 C -0.16 -1.25 10.11 -39.32 -0.40 -1.65 16 5 C 0.10 0.98 11.18 -17.56 -0.20 0.79 16 6 N -0.45 -6.33 10.24 -9.80 -0.10 -6.43 16 7 C 0.10 1.43 5.40 -83.01 -0.45 0.98 16 8 C 0.60 9.72 5.92 -12.18 -0.07 9.65 16 9 O -0.54 -10.16 17.41 5.35 0.09 -10.07 16 10 N -0.60 -9.24 3.32 -170.27 -0.56 -9.80 16 11 C 0.10 1.41 6.23 -2.40 -0.01 1.40 16 12 C -0.10 -1.75 3.34 -89.17 -0.30 -2.05 16 13 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 14 C -0.08 -1.31 3.15 -89.25 -0.28 -1.59 16 15 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 16 C 0.10 1.55 6.33 -2.39 -0.02 1.54 16 17 C -0.11 -1.96 2.87 -90.28 -0.26 -2.22 16 18 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 19 C -0.11 -1.69 5.30 -26.74 -0.14 -1.83 16 20 C -0.13 -2.19 5.53 -26.60 -0.15 -2.34 16 21 C 0.18 3.39 3.19 -66.99 -0.21 3.17 16 22 H 0.07 1.25 7.99 -51.93 -0.42 0.84 16 23 N -0.60 -14.15 2.88 -163.17 -0.47 -14.61 16 24 C -0.23 -6.20 9.99 -15.06 -0.15 -6.35 16 25 H 0.07 1.92 7.79 -52.49 -0.41 1.51 16 26 C -0.01 -0.22 5.47 -17.43 -0.10 -0.31 16 27 N -0.92 -26.23 9.77 55.49 0.54 -25.69 16 28 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 31 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 32 C 0.20 4.69 4.37 -3.11 -0.01 4.68 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.51 8.13 -51.93 -0.42 0.08 16 35 H 0.07 0.76 6.91 -51.93 -0.36 0.40 16 36 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.07 0.98 7.34 -51.93 -0.38 0.60 16 40 H 0.08 1.09 5.21 -51.93 -0.27 0.82 16 41 H 0.08 1.14 5.30 -51.93 -0.28 0.86 16 42 H 0.08 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.05 0.69 5.79 -51.93 -0.30 0.39 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.05 0.70 5.67 -51.93 -0.29 0.41 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.05 1.35 7.23 -51.93 -0.38 0.97 16 49 H 0.05 1.29 7.23 -51.93 -0.38 0.92 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -32.06 372.22 -10.54 -42.60 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.23 Total: 1.33 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -3.40 Total: 0.37 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.59 Total: -56.54 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.06 -10.54 -42.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087348317.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.388 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds