Wall clock time and date at job start Wed Apr 1 2020 00:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38631 * 120.47556 * 2 1 4 4 C 1.38580 * 118.49115 * 180.27882 * 3 2 1 5 5 C 1.38609 * 119.34986 * 359.73366 * 4 3 2 6 6 N 1.31497 * 120.90122 * 359.97438 * 5 4 3 7 7 C 1.32747 * 121.64272 * 359.97438 * 6 5 4 8 8 C 1.48162 * 119.72158 * 179.97438 * 7 6 5 9 9 O 1.21518 * 119.99967 * 104.58887 * 8 7 6 10 10 N 1.34780 * 120.00432 * 284.59111 * 8 7 6 11 11 C 1.48163 * 127.83078 * 355.04639 * 10 8 7 12 12 C 1.54381 * 104.55697 * 140.33709 * 11 10 8 13 13 H 1.08999 * 111.45241 * 263.88416 * 12 11 10 14 14 C 1.54164 * 105.00905 * 24.07928 * 12 11 10 15 15 H 1.08999 * 110.86681 * 239.35312 * 14 12 11 16 16 C 1.48138 * 127.83911 * 175.01217 * 10 8 7 17 17 C 1.53027 * 109.72044 * 116.63135 * 14 12 11 18 18 H 1.08992 * 110.12930 * 180.02562 * 17 14 12 19 19 C 1.53042 * 109.19823 * 300.51980 * 17 14 12 20 20 C 1.52932 * 110.00615 * 59.21425 * 19 17 14 21 21 C 1.53230 * 108.96706 * 141.20020 * 12 11 10 22 22 H 1.09005 * 110.93809 * 67.63379 * 21 12 11 23 23 N 1.47693 * 108.04693 * 188.89985 * 21 12 11 24 24 C 1.36928 * 122.07600 * 238.60427 * 23 21 12 25 25 H 1.08000 * 120.00253 * 359.97438 * 24 23 21 26 26 C 1.38816 * 120.00186 * 179.72769 * 24 23 21 27 27 N 1.31620 * 119.99428 * 0.27423 * 26 24 23 28 28 Si 1.86798 * 120.00400 * 180.27695 * 26 24 23 29 29 H 1.48501 * 109.47183 * 359.97438 * 28 26 24 30 30 H 1.48496 * 109.47274 * 120.00015 * 28 26 24 31 31 H 1.48507 * 109.46756 * 239.99874 * 28 26 24 32 32 C 1.47644 * 115.84531 * 58.87511 * 23 21 12 33 33 H 1.08997 * 109.47758 * 275.03769 * 1 2 3 34 34 H 1.09007 * 109.46470 * 35.03392 * 1 2 3 35 35 H 1.09001 * 109.46984 * 155.02928 * 1 2 3 36 36 H 1.07996 * 120.75171 * 0.03535 * 3 2 1 37 37 H 1.07998 * 120.32569 * 179.70345 * 4 3 2 38 38 H 1.08000 * 119.54818 * 179.97438 * 5 4 3 39 39 H 1.08999 * 110.42007 * 21.57026 * 11 10 8 40 40 H 1.08994 * 110.41926 * 259.10051 * 11 10 8 41 41 H 1.09000 * 110.40804 * 100.70583 * 16 10 8 42 42 H 1.09003 * 110.40041 * 338.28961 * 16 10 8 43 43 H 1.08997 * 109.37431 * 299.05339 * 19 17 14 44 44 H 1.08997 * 109.37683 * 179.38400 * 19 17 14 45 45 H 1.08995 * 109.45258 * 240.85787 * 20 19 17 46 46 H 1.09000 * 109.42600 * 120.92051 * 20 19 17 47 47 H 0.97001 * 119.99854 * 180.02562 * 27 26 24 48 48 H 1.08996 * 109.98893 * 119.45957 * 32 23 21 49 49 H 1.08994 * 109.99355 * 240.83623 * 32 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1948 0.0000 4 6 3.5950 1.1468 -0.0059 5 6 4.2322 -0.0842 -0.0060 6 7 3.5406 -1.2025 -0.0001 7 6 2.2131 -1.2005 0.0067 8 6 1.4766 -2.4860 0.0127 9 8 0.9497 -2.8797 1.0345 10 7 1.3908 -3.2189 -1.1152 11 6 1.8745 -2.8624 -2.4695 12 6 2.4602 -4.1760 -3.0305 13 1 3.5390 -4.2267 -2.8827 14 6 1.7441 -5.2972 -2.2517 15 1 2.4621 -5.9150 -1.7123 16 6 0.7923 -4.5637 -1.2818 17 6 0.9128 -6.1462 -3.2161 18 1 0.4029 -6.9411 -2.6720 19 6 -0.1182 -5.2540 -3.9113 20 6 0.5895 -4.1352 -4.6769 21 6 2.1071 -4.2836 -4.5177 22 1 2.6280 -3.5218 -5.0979 23 7 2.4843 -5.6343 -4.9810 24 6 3.3749 -5.8304 -6.0025 25 1 3.8251 -4.9821 -6.4967 26 6 3.7029 -7.1194 -6.3995 27 7 3.1538 -8.1531 -5.7976 28 14 4.9237 -7.3871 -7.7879 29 1 5.3930 -6.0725 -8.2947 30 1 6.0830 -8.1665 -7.2843 31 1 4.2650 -8.1350 -8.8888 32 6 1.8368 -6.7599 -4.2784 33 1 -0.3634 0.0902 1.0236 34 1 -0.3632 0.8415 -0.5900 35 1 -0.3633 -0.9316 -0.4338 36 1 1.6903 2.1414 0.0006 37 1 4.1723 2.0596 -0.0109 38 1 5.3114 -0.1253 -0.0111 39 1 2.6480 -2.0970 -2.4078 40 1 1.0472 -2.5192 -3.0906 41 1 -0.2049 -4.4849 -1.7149 42 1 0.7516 -5.0828 -0.3241 43 1 -0.7812 -4.8178 -3.1642 44 1 -0.7048 -5.8538 -4.6071 45 1 0.2757 -3.1695 -4.2809 46 1 0.3275 -4.1969 -5.7332 47 1 3.3833 -9.0539 -6.0747 48 1 1.2551 -7.3539 -4.9833 49 1 2.5912 -7.3828 -3.7980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087348317.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:33 Heat of formation + Delta-G solvation = 26.407425 kcal Electronic energy + Delta-G solvation = -31078.877549 eV Core-core repulsion = 27198.943411 eV Total energy + Delta-G solvation = -3879.934138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.33265 -41.41190 -39.71296 -37.25427 -35.03078 -34.67006 -33.38566 -33.06678 -31.71359 -31.47871 -29.13817 -28.36744 -27.10088 -26.23771 -24.52948 -23.65694 -23.20077 -22.48716 -22.25173 -20.97639 -19.27563 -18.65392 -18.07471 -17.67370 -17.44005 -17.02222 -16.73634 -16.37655 -16.22405 -15.71107 -15.45798 -15.39012 -15.06783 -14.66747 -14.22426 -14.16298 -14.01997 -13.79672 -13.74800 -13.68706 -13.51728 -13.38432 -13.03337 -12.90309 -12.87344 -12.71913 -12.59289 -12.38490 -12.19597 -12.03348 -11.92029 -11.78610 -11.38308 -11.18188 -10.85459 -10.77569 -10.72363 -10.49710 -10.45637 -9.96546 -9.80521 -8.81582 -7.73029 -5.11027 -0.13285 0.26376 1.28939 1.46740 1.47435 1.56929 1.77488 2.52493 2.68613 3.11167 3.38577 3.47388 3.56973 3.67354 3.76195 3.82515 3.84863 3.98069 4.06136 4.12588 4.16208 4.24921 4.28933 4.39003 4.42243 4.49157 4.50986 4.61186 4.65898 4.67146 4.73936 4.74337 4.81462 4.87899 4.97803 5.02808 5.08207 5.10665 5.15340 5.20435 5.25817 5.38713 5.42078 5.51566 5.54647 5.64701 5.66737 5.79796 5.92466 6.30546 6.36552 6.79693 6.90927 7.20665 7.91599 8.41937 9.30061 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.003243 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.530207 B = 8631.125709 C = 9457.640572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.105 4.105 3 C -0.073 4.073 4 C -0.140 4.140 5 C 0.081 3.919 6 N -0.492 5.492 7 C 0.064 3.936 8 C 0.597 3.403 9 O -0.573 6.573 10 N -0.605 5.605 11 C 0.116 3.884 12 C -0.098 4.098 13 H 0.054 0.946 14 C -0.075 4.075 15 H 0.055 0.945 16 C 0.111 3.889 17 C -0.101 4.101 18 H 0.078 0.922 19 C -0.102 4.102 20 C -0.127 4.127 21 C 0.174 3.826 22 H 0.069 0.931 23 N -0.616 5.616 24 C -0.238 4.238 25 H 0.080 0.920 26 C -0.067 4.067 27 N -0.951 5.951 28 Si 0.968 3.032 29 H -0.266 1.266 30 H -0.299 1.299 31 H -0.295 1.295 32 C 0.216 3.784 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.179 0.821 37 H 0.180 0.820 38 H 0.182 0.818 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.051 0.949 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.242 0.758 48 H 0.015 0.985 49 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 22.291 9.821 25.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.108 4.108 3 C -0.099 4.099 4 C -0.159 4.159 5 C -0.078 4.078 6 N -0.203 5.203 7 C -0.074 4.074 8 C 0.384 3.616 9 O -0.452 6.452 10 N -0.336 5.336 11 C -0.007 4.007 12 C -0.119 4.119 13 H 0.073 0.927 14 C -0.094 4.094 15 H 0.074 0.926 16 C -0.010 4.010 17 C -0.120 4.120 18 H 0.097 0.903 19 C -0.139 4.139 20 C -0.166 4.166 21 C 0.067 3.933 22 H 0.088 0.912 23 N -0.340 5.340 24 C -0.368 4.368 25 H 0.098 0.902 26 C -0.260 4.260 27 N -0.601 5.601 28 Si 0.798 3.202 29 H -0.190 1.190 30 H -0.226 1.226 31 H -0.223 1.223 32 C 0.091 3.909 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.196 0.804 37 H 0.197 0.803 38 H 0.199 0.801 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.033 0.967 49 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -5.644 21.159 10.366 24.228 hybrid contribution 0.863 -0.657 -0.747 1.317 sum -4.781 20.502 9.619 23.145 Atomic orbital electron populations 1.20840 0.88696 1.03701 1.03732 1.21081 0.98622 0.92576 0.98537 1.21927 0.94482 0.98239 0.95228 1.22767 0.95474 1.00261 0.97386 1.23340 1.01541 0.87403 0.95540 1.67534 1.06910 1.34116 1.11718 1.20691 0.90741 0.92879 1.03061 1.17856 0.78898 0.83150 0.81651 1.90754 1.49627 1.71957 1.32857 1.48945 1.57375 1.18604 1.08674 1.22745 0.99803 0.96770 0.81359 1.22462 0.98725 0.93810 0.96907 0.92718 1.21808 0.96482 0.96011 0.95132 0.92644 1.22686 0.97597 0.81461 0.99257 1.21652 0.96613 0.97623 0.96108 0.90334 1.21474 0.96739 0.96711 0.98955 1.22099 0.95530 0.98947 0.99986 1.20773 0.94445 0.86690 0.91377 0.91236 1.44877 1.49434 1.01246 1.38412 1.19707 1.16302 0.92313 1.08493 0.90179 1.25538 1.02459 0.95656 1.02322 1.70281 1.47756 0.97385 1.44687 0.85143 0.78337 0.77758 0.78935 1.18987 1.22630 1.22277 1.20664 0.91983 0.87632 0.90595 0.90071 0.87550 0.93064 0.80358 0.80266 0.80122 0.90799 0.87499 0.87778 0.91158 0.89687 0.93034 0.89190 0.93117 0.94874 0.96660 0.97747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.71 71.24 0.69 -1.09 16 2 C -0.11 -2.05 5.93 -19.52 -0.12 -2.16 16 3 C -0.07 -0.90 9.87 22.45 0.22 -0.68 16 4 C -0.14 -1.61 10.11 22.44 0.23 -1.38 16 5 C 0.08 1.46 11.18 84.83 0.95 2.41 16 6 N -0.49 -13.43 10.24 -184.90 -1.89 -15.32 16 7 C 0.06 1.75 5.40 41.89 0.23 1.97 16 8 C 0.60 19.16 5.92 86.88 0.51 19.68 16 9 O -0.57 -21.93 17.41 -3.77 -0.07 -22.00 16 10 N -0.60 -17.83 3.32 -810.91 -2.69 -20.52 16 11 C 0.12 3.09 6.23 86.53 0.54 3.63 16 12 C -0.10 -3.31 3.34 -9.85 -0.03 -3.35 16 13 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.07 -2.55 3.15 -9.91 -0.03 -2.58 16 15 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 16 C 0.11 3.24 6.33 86.55 0.55 3.78 16 17 C -0.10 -3.60 2.87 -10.57 -0.03 -3.63 16 18 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 19 C -0.10 -3.04 5.30 30.59 0.16 -2.88 16 20 C -0.13 -3.83 5.53 30.68 0.17 -3.66 16 21 C 0.17 6.42 3.19 44.95 0.14 6.56 16 22 H 0.07 2.52 7.99 -2.38 -0.02 2.50 16 23 N -0.62 -29.92 2.88 -670.15 -1.93 -31.85 16 24 C -0.24 -12.95 9.99 84.04 0.84 -12.11 16 25 H 0.08 4.16 7.79 -2.91 -0.02 4.13 16 26 C -0.07 -3.80 5.47 84.86 0.46 -3.34 16 27 N -0.95 -57.03 9.77 21.65 0.21 -56.82 16 28 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 30 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 31 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 32 C 0.22 10.51 4.37 86.36 0.38 10.89 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.11 0.97 8.13 -2.38 -0.02 0.95 16 35 H 0.05 1.00 6.91 -2.39 -0.02 0.99 16 36 H 0.18 0.79 8.06 -2.91 -0.02 0.76 16 37 H 0.18 0.61 8.06 -2.91 -0.02 0.58 16 38 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.07 1.97 7.34 -2.39 -0.02 1.95 16 40 H 0.11 2.37 5.21 -2.39 -0.01 2.36 16 41 H 0.10 2.57 5.30 -2.39 -0.01 2.56 16 42 H 0.07 2.16 7.93 -2.39 -0.02 2.14 16 43 H 0.08 2.00 5.79 -2.39 -0.01 1.98 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.09 2.05 5.67 -2.39 -0.01 2.04 16 46 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 48 H 0.02 0.84 7.23 -2.39 -0.02 0.83 16 49 H 0.00 0.25 7.23 -2.39 -0.02 0.23 16 Total: -1.00 -75.98 372.22 2.49 -73.50 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.96 Total: 13.00 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 5.86 Total: 12.09 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -6.30 Total: -124.50 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.07 Total: -22.00 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -75.98 2.49 -73.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087348317.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.904 kcal (2) G-P(sol) polarization free energy of solvation -75.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds