Wall clock time and date at job start Wed Apr 1 2020 00:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38172 * 120.50035 * 2 1 4 4 N 1.31795 * 120.89898 * 180.02562 * 3 2 1 5 5 C 1.31827 * 122.04658 * 359.97438 * 4 3 2 6 6 C 1.38135 * 120.89749 * 359.74180 * 5 4 3 7 7 C 1.39798 * 120.50114 * 180.02562 * 2 1 3 8 8 C 1.48153 * 120.92022 * 359.95822 * 7 2 1 9 9 O 1.21514 * 120.00259 * 43.11727 * 8 7 2 10 10 N 1.34772 * 119.99938 * 223.11094 * 8 7 2 11 11 C 1.48170 * 127.83476 * 355.24700 * 10 8 7 12 12 C 1.54367 * 104.55172 * 140.37571 * 11 10 8 13 13 H 1.08998 * 110.92492 * 263.66290 * 12 11 10 14 14 C 1.54161 * 105.54780 * 23.86143 * 12 11 10 15 15 H 1.08995 * 110.88046 * 240.13276 * 14 12 11 16 16 C 1.48145 * 127.83717 * 175.28581 * 10 8 7 17 17 C 1.53023 * 109.71999 * 116.80154 * 14 12 11 18 18 H 1.08995 * 109.64442 * 180.50066 * 17 14 12 19 19 C 1.53072 * 109.16612 * 300.62777 * 17 14 12 20 20 C 1.55440 * 110.31712 * 58.68722 * 19 17 14 21 21 C 1.53204 * 109.00784 * 141.32904 * 12 11 10 22 22 H 1.08994 * 110.51843 * 67.98366 * 21 12 11 23 23 N 1.47653 * 108.08194 * 189.05782 * 21 12 11 24 24 C 1.36940 * 122.03801 * 239.17387 * 23 21 12 25 25 H 1.07995 * 119.99736 * 359.97438 * 24 23 21 26 26 C 1.38813 * 119.99725 * 180.02562 * 24 23 21 27 27 N 1.31615 * 119.99934 * 359.97438 * 26 24 23 28 28 Si 1.86804 * 119.99645 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.47040 * 359.97438 * 28 26 24 30 30 H 1.48496 * 109.47109 * 119.99906 * 28 26 24 31 31 H 1.48501 * 109.46519 * 239.99859 * 28 26 24 32 32 C 1.46384 * 116.66016 * 57.90065 * 23 21 12 33 33 H 1.08999 * 109.47335 * 264.35463 * 1 2 3 34 34 H 1.08999 * 109.47207 * 24.35697 * 1 2 3 35 35 H 1.09005 * 109.46992 * 144.35923 * 1 2 3 36 36 H 1.08002 * 119.54564 * 0.02562 * 3 2 1 37 37 H 1.07997 * 119.55317 * 179.97438 * 5 4 3 38 38 H 1.07995 * 120.49907 * 180.28908 * 6 5 4 39 39 H 1.08993 * 110.41936 * 21.60771 * 11 10 8 40 40 H 1.09006 * 110.52171 * 259.18893 * 11 10 8 41 41 H 1.08995 * 110.39980 * 338.20469 * 16 10 8 42 42 H 1.08999 * 110.39876 * 100.50278 * 16 10 8 43 43 H 1.08998 * 109.38226 * 179.43435 * 19 17 14 44 44 H 1.09001 * 109.38217 * 299.11251 * 19 17 14 45 45 H 1.08997 * 110.57951 * 241.83890 * 20 19 17 46 46 H 1.09003 * 109.62126 * 121.11531 * 20 19 17 47 47 H 0.97001 * 119.99983 * 180.02562 * 27 26 24 48 48 H 1.08995 * 110.38739 * 241.50297 * 32 23 21 49 49 H 1.09008 * 109.90944 * 120.02359 * 32 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1997 -0.0005 5 6 4.2335 0.0872 -0.0005 6 6 3.6137 -1.1473 0.0053 7 6 2.2166 -1.2045 -0.0005 8 6 1.5079 -2.5056 -0.0002 9 8 0.5422 -2.6716 -0.7188 10 7 1.9343 -3.5050 0.7971 11 6 3.1372 -3.5274 1.6620 12 6 2.6760 -4.2436 2.9493 13 1 2.3927 -3.5224 3.7159 14 6 1.4683 -5.1062 2.5322 15 1 0.5744 -4.8159 3.0843 16 6 1.3071 -4.8306 1.0070 17 6 1.7942 -6.5866 2.7416 18 1 0.9429 -7.1957 2.4380 19 6 3.0177 -6.9559 1.8990 20 6 4.2343 -6.0750 2.2989 21 6 3.8047 -5.1528 3.4461 22 1 4.6488 -4.5580 3.7948 23 7 3.2721 -5.9878 4.5412 24 6 3.8102 -5.9646 5.8002 25 1 4.6507 -5.3218 6.0163 26 6 3.2761 -6.7681 6.7982 27 7 2.2521 -7.5518 6.5345 28 14 4.0107 -6.7369 8.5154 29 1 5.1456 -5.7798 8.5510 30 1 2.9737 -6.3121 9.4898 31 1 4.4971 -8.0943 8.8703 32 6 2.1153 -6.8270 4.2242 33 1 -0.3634 -0.1011 1.0227 34 1 -0.3633 0.9362 -0.4238 35 1 -0.3633 -0.8352 -0.5989 36 1 1.6690 2.1263 0.0004 37 1 5.3121 0.1417 -0.0014 38 1 4.1994 -2.0546 0.0100 39 1 3.4623 -2.5118 1.8875 40 1 3.9416 -4.0860 1.1834 41 1 0.2505 -4.7973 0.7414 42 1 1.8217 -5.5916 0.4204 43 1 3.2591 -8.0076 2.0533 44 1 2.7951 -6.7883 0.8452 45 1 4.5653 -5.4722 1.4532 46 1 5.0534 -6.7119 2.6327 47 1 1.8786 -8.1130 7.2320 48 1 1.2617 -6.5456 4.8408 49 1 2.3622 -7.8763 4.3867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087353045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:21 Heat of formation + Delta-G solvation = 48.224477 kcal Electronic energy + Delta-G solvation = -31046.695502 eV Core-core repulsion = 27167.707422 eV Total energy + Delta-G solvation = -3878.988080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17567 -40.34193 -38.68761 -35.95460 -33.68671 -33.40695 -32.42343 -31.76393 -30.16869 -29.93663 -27.85805 -27.31078 -25.72298 -24.94352 -23.45636 -22.46521 -22.11534 -21.05937 -20.80280 -19.92025 -17.86601 -17.29984 -16.87954 -16.64379 -15.95588 -15.73077 -15.54929 -15.00139 -14.84134 -14.78676 -14.43749 -14.17918 -13.87388 -13.65092 -13.53976 -12.93839 -12.90044 -12.66028 -12.43177 -12.26418 -12.21125 -12.14610 -11.81578 -11.59293 -11.34738 -11.17685 -10.98014 -10.86954 -10.63013 -10.54597 -10.36596 -10.18012 -9.95261 -9.87333 -9.75598 -9.51681 -9.40990 -9.25445 -9.17237 -8.65733 -8.52410 -6.91216 -5.70108 -3.08585 0.61529 0.81964 2.57227 2.84850 3.36138 3.42332 3.44408 3.53599 4.14470 4.20736 4.43109 4.51930 4.57406 4.72215 4.79414 4.88756 5.04241 5.12695 5.26479 5.30754 5.34222 5.41260 5.43211 5.48008 5.48848 5.51447 5.59117 5.60225 5.66781 5.72783 5.82019 5.92665 6.00269 6.04103 6.07267 6.10581 6.12569 6.26239 6.36465 6.41113 6.42849 6.62870 6.70224 6.77043 6.86276 6.93078 7.47439 7.60809 7.65894 7.68286 7.88989 7.98542 8.29333 9.23009 9.83439 10.34449 11.33418 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.003191 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.303525 B = 8773.787202 C = 9437.687200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 C 0.094 3.906 4 N -0.470 5.470 5 C 0.089 3.911 6 C -0.138 4.138 7 C -0.080 4.080 8 C 0.578 3.422 9 O -0.536 6.536 10 N -0.608 5.608 11 C 0.089 3.911 12 C -0.108 4.108 13 H 0.078 0.922 14 C -0.077 4.077 15 H 0.078 0.922 16 C 0.101 3.899 17 C -0.110 4.110 18 H 0.066 0.934 19 C -0.105 4.105 20 C -0.135 4.135 21 C 0.182 3.818 22 H 0.067 0.933 23 N -0.598 5.598 24 C -0.238 4.238 25 H 0.075 0.925 26 C -0.007 4.007 27 N -0.921 5.921 28 Si 0.908 3.092 29 H -0.281 1.281 30 H -0.291 1.291 31 H -0.291 1.291 32 C 0.205 3.795 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.142 0.858 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.250 0.750 48 H 0.047 0.953 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 10.751 -13.678 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 C -0.063 4.063 4 N -0.179 5.179 5 C -0.068 4.068 6 C -0.159 4.159 7 C -0.091 4.091 8 C 0.367 3.633 9 O -0.414 6.414 10 N -0.340 5.340 11 C -0.034 4.034 12 C -0.129 4.129 13 H 0.097 0.903 14 C -0.096 4.096 15 H 0.096 0.904 16 C -0.020 4.020 17 C -0.130 4.130 18 H 0.084 0.916 19 C -0.142 4.142 20 C -0.174 4.174 21 C 0.073 3.927 22 H 0.086 0.914 23 N -0.321 5.321 24 C -0.367 4.367 25 H 0.093 0.907 26 C -0.203 4.203 27 N -0.569 5.569 28 Si 0.739 3.261 29 H -0.206 1.206 30 H -0.218 1.218 31 H -0.218 1.218 32 C 0.081 3.919 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.160 0.840 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.576 11.391 -13.954 18.023 hybrid contribution -0.029 -0.837 1.080 1.367 sum 0.547 10.554 -12.875 16.657 Atomic orbital electron populations 1.21029 0.89505 1.04641 1.03552 1.21006 0.98145 0.92446 0.97225 1.22690 0.89797 0.97234 0.96583 1.67538 1.08254 1.31813 1.10263 1.22724 1.00567 0.87166 0.96321 1.22441 0.93737 1.00449 0.99245 1.20170 0.94048 0.93668 1.01208 1.17749 0.83479 0.82433 0.79684 1.90727 1.27881 1.81835 1.40945 1.48938 1.27118 1.15162 1.42753 1.23115 0.87749 1.01288 0.91206 1.22723 0.97604 0.97612 0.94997 0.90314 1.22194 0.98196 0.96438 0.92781 0.90401 1.23033 0.98860 0.82845 0.97270 1.21824 0.96982 0.93616 1.00566 0.91559 1.21890 0.95267 0.99516 0.97543 1.22634 0.97854 0.98726 0.98233 1.20472 0.93169 0.90585 0.88517 0.91441 1.44320 1.34149 1.47269 1.06356 1.19332 1.11417 1.20067 0.85845 0.90730 1.24790 0.98226 0.99019 0.98216 1.70060 1.25701 1.29444 1.31736 0.86098 0.78159 0.77246 0.84560 1.20586 1.21850 1.21821 1.20924 0.89570 0.95238 0.86202 0.90751 0.91021 0.88421 0.82215 0.82103 0.83991 0.90665 0.89515 0.90611 0.89936 0.92335 0.93356 0.92805 0.91995 0.93897 0.93509 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.57 36.01 0.34 -0.99 16 2 C -0.09 -0.97 5.93 -104.06 -0.62 -1.59 16 3 C 0.09 0.97 10.84 -17.59 -0.19 0.78 16 4 N -0.47 -5.28 10.33 -13.30 -0.14 -5.42 16 5 C 0.09 0.87 11.17 -17.59 -0.20 0.67 16 6 C -0.14 -1.42 7.92 -39.02 -0.31 -1.73 16 7 C -0.08 -0.99 5.45 -104.65 -0.57 -1.56 16 8 C 0.58 8.31 7.19 -12.19 -0.09 8.22 16 9 O -0.54 -9.03 14.94 5.35 0.08 -8.95 16 10 N -0.61 -8.27 3.32 -169.39 -0.56 -8.83 16 11 C 0.09 1.11 4.85 -2.41 -0.01 1.10 16 12 C -0.11 -1.69 3.29 -89.19 -0.29 -1.98 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C -0.08 -1.21 3.22 -88.49 -0.28 -1.49 16 15 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.10 1.41 6.35 -1.63 -0.01 1.40 16 17 C -0.11 -1.89 2.89 -90.26 -0.26 -2.15 16 18 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 19 C -0.10 -1.61 5.36 -25.40 -0.14 -1.75 16 20 C -0.14 -2.08 5.73 -25.26 -0.14 -2.23 16 21 C 0.18 3.22 3.17 -67.02 -0.21 3.00 16 22 H 0.07 1.18 7.99 -51.93 -0.42 0.77 16 23 N -0.60 -13.65 2.85 -164.21 -0.47 -14.11 16 24 C -0.24 -6.15 9.98 -15.06 -0.15 -6.30 16 25 H 0.07 1.88 7.79 -52.49 -0.41 1.47 16 26 C -0.01 -0.18 5.46 -17.43 -0.10 -0.27 16 27 N -0.92 -25.69 9.66 55.49 0.54 -25.15 16 28 Si 0.91 21.34 29.55 -169.99 -5.02 16.31 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 31 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 32 C 0.20 4.61 4.31 -3.80 -0.02 4.59 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 35 H 0.10 1.22 5.67 -51.93 -0.29 0.93 16 36 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.14 1.22 6.71 -52.49 -0.35 0.87 16 39 H 0.07 0.86 6.04 -51.93 -0.31 0.55 16 40 H 0.09 0.98 5.17 -51.93 -0.27 0.71 16 41 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 42 H 0.08 1.09 5.35 -51.93 -0.28 0.81 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.64 5.78 -51.93 -0.30 0.34 16 45 H 0.05 0.68 5.62 -51.93 -0.29 0.39 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 48 H 0.05 1.20 7.23 -51.93 -0.38 0.82 16 49 H 0.05 1.39 7.12 -51.92 -0.37 1.02 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -30.31 364.40 -10.34 -40.65 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.02 Total: 2.29 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.24 Total: -2.28 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.63 Total: -53.52 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.31 -10.34 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087353045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.873 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds