Wall clock time and date at job start Wed Apr 1 2020 00:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38167 * 120.50275 * 2 1 4 4 N 1.31800 * 120.89653 * 180.28487 * 3 2 1 5 5 C 1.31822 * 122.04549 * 359.73442 * 4 3 2 6 6 C 1.38130 * 120.90212 * 0.02562 * 5 4 3 7 7 C 1.39801 * 120.49659 * 179.76536 * 2 1 3 8 8 C 1.48146 * 120.92411 * 0.02562 * 7 2 1 9 9 O 1.21516 * 119.99958 * 317.48645 * 8 7 2 10 10 N 1.34777 * 120.00080 * 137.48204 * 8 7 2 11 11 C 1.53286 * 125.08863 * 175.28528 * 10 8 7 12 12 C 1.49348 * 100.38748 * 202.85829 * 11 10 8 13 13 H 1.09008 * 105.23330 * 64.72678 * 12 11 10 14 14 C 1.57067 * 102.66540 * 317.28397 * 12 11 10 15 15 H 1.08997 * 109.08272 * 291.91708 * 14 12 11 16 16 C 1.49132 * 125.88017 * 354.49278 * 10 8 7 17 17 C 1.51964 * 104.62129 * 174.51226 * 14 12 11 18 18 H 1.09000 * 114.19505 * 207.76236 * 17 14 12 19 19 C 1.56090 * 103.09634 * 83.50929 * 17 14 12 20 20 C 1.53901 * 106.97173 * 322.24721 * 19 17 14 21 21 C 1.49097 * 130.13634 * 192.00716 * 12 11 10 22 22 H 1.09001 * 113.01173 * 330.44863 * 21 12 11 23 23 C 1.56850 * 104.05644 * 207.15808 * 21 12 11 24 24 N 1.49077 * 103.45727 * 322.97896 * 23 21 12 25 25 C 1.36936 * 122.59107 * 144.08059 * 24 23 21 26 26 H 1.08004 * 119.99851 * 189.74681 * 25 24 23 27 27 C 1.38806 * 120.00351 * 9.74525 * 25 24 23 28 28 N 1.31623 * 119.99741 * 36.68473 * 27 25 24 29 29 Si 1.86804 * 120.00434 * 216.68459 * 27 25 24 30 30 H 1.48496 * 109.46974 * 180.02562 * 29 27 25 31 31 H 1.48495 * 109.46962 * 59.99595 * 29 27 25 32 32 H 1.48504 * 109.46799 * 300.00014 * 29 27 25 33 33 H 1.09004 * 109.47654 * 272.75529 * 1 2 3 34 34 H 1.09008 * 109.47073 * 32.75825 * 1 2 3 35 35 H 1.09000 * 109.47393 * 152.75225 * 1 2 3 36 36 H 1.08004 * 119.55284 * 359.97438 * 3 2 1 37 37 H 1.08010 * 119.54784 * 180.02562 * 5 4 3 38 38 H 1.07996 * 120.49709 * 179.97438 * 6 5 4 39 39 H 1.08996 * 112.22274 * 85.11588 * 11 10 8 40 40 H 1.08997 * 111.24713 * 320.20019 * 11 10 8 41 41 H 1.08997 * 110.29700 * 67.65356 * 16 10 8 42 42 H 1.09004 * 110.29332 * 305.52089 * 16 10 8 43 43 H 1.08995 * 109.95327 * 81.61200 * 19 17 14 44 44 H 1.09003 * 109.95391 * 202.79683 * 19 17 14 45 45 H 1.09001 * 109.54167 * 86.12529 * 20 19 17 46 46 H 1.09007 * 109.53532 * 206.37772 * 20 19 17 47 47 H 1.09005 * 110.74038 * 204.48035 * 23 21 12 48 48 H 1.09000 * 110.59936 * 81.41522 * 23 21 12 49 49 H 0.97001 * 119.99804 * 357.35331 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1995 -0.0056 5 6 4.2333 0.0870 -0.0063 6 6 3.6136 -1.1475 -0.0016 7 6 2.2164 -1.2046 0.0049 8 6 1.5078 -2.5055 0.0097 9 8 0.5356 -2.6653 0.7211 10 7 1.9412 -3.5119 -0.7751 11 6 1.3631 -4.9315 -0.7871 12 6 2.5241 -5.6904 -1.3409 13 1 3.3111 -5.5961 -0.5926 14 6 3.0252 -4.7558 -2.4996 15 1 2.2769 -4.7380 -3.2919 16 6 3.0411 -3.4263 -1.7784 17 6 4.2947 -5.4199 -3.0062 18 1 5.0155 -4.7298 -3.4447 19 6 3.7580 -6.4958 -4.0016 20 6 2.4670 -7.0689 -3.3906 21 6 2.6030 -7.0894 -1.8502 22 1 1.8900 -7.7589 -1.3691 23 6 4.0978 -7.4989 -1.6088 24 7 4.8516 -6.2451 -1.8955 25 6 5.9719 -5.8819 -1.1969 26 1 6.3946 -4.8968 -1.3284 27 6 6.5644 -6.7799 -0.3197 28 7 6.5983 -8.0623 -0.6140 29 14 7.3136 -6.1683 1.2785 30 1 7.8785 -7.3167 2.0316 31 1 6.2647 -5.5073 2.0958 32 1 8.3938 -5.1945 0.9780 33 1 -0.3634 0.0494 1.0265 34 1 -0.3634 0.8643 -0.5561 35 1 -0.3634 -0.9136 -0.4705 36 1 1.6692 2.1263 -0.0004 37 1 5.3121 0.1415 -0.0106 38 1 4.1993 -2.0548 -0.0026 39 1 0.4958 -5.0179 -1.4416 40 1 1.1245 -5.2694 0.2213 41 1 3.9984 -3.2790 -1.2784 42 1 2.8509 -2.6137 -2.4796 43 1 3.5409 -6.0354 -4.9654 44 1 4.4959 -7.2884 -4.1261 45 1 1.6206 -6.4430 -3.6736 46 1 2.3099 -8.0837 -3.7563 47 1 4.3967 -8.2912 -2.2952 48 1 4.2484 -7.8087 -0.5747 49 1 6.1756 -8.3851 -1.4253 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087353046.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:26 Heat of formation + Delta-G solvation = 57.191720 kcal Electronic energy + Delta-G solvation = -31435.762076 eV Core-core repulsion = 27557.162845 eV Total energy + Delta-G solvation = -3878.599231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.51115 -41.55153 -39.86231 -37.42142 -35.33142 -34.55514 -33.47863 -32.72077 -31.52930 -31.41112 -29.07962 -28.36574 -26.96758 -26.26962 -24.71158 -23.47247 -23.33500 -22.31451 -21.91508 -20.93160 -19.65717 -18.65627 -18.50049 -17.90199 -17.37618 -16.83022 -16.70875 -16.37955 -16.08589 -15.79796 -15.61050 -15.42587 -15.20107 -14.82410 -14.60445 -14.33258 -14.25388 -13.97744 -13.80708 -13.70068 -13.29385 -13.27751 -12.93272 -12.81613 -12.72893 -12.56111 -12.55020 -12.38573 -12.12703 -12.12380 -11.92017 -11.68430 -11.44462 -11.39009 -10.92100 -10.74442 -10.60024 -10.46155 -10.24777 -9.98851 -9.81868 -8.91142 -8.35411 -5.10341 -0.28997 0.02187 1.53223 1.55137 1.60424 1.63425 1.77294 2.60850 2.70036 3.08277 3.19327 3.30303 3.35343 3.45609 3.70237 3.74821 3.75946 3.80781 3.91381 4.04870 4.15297 4.22764 4.28169 4.34926 4.40207 4.46645 4.48484 4.50392 4.59434 4.69824 4.71325 4.73349 4.77486 4.81378 4.84288 4.85401 4.93949 5.04313 5.09256 5.09809 5.13484 5.21308 5.25056 5.37272 5.43256 5.52622 5.58006 5.71206 5.82951 6.29600 6.40779 6.84475 6.86186 6.98380 7.81654 8.33495 9.05847 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011389 B = 0.004354 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.990513 B = 6429.038611 C = 7744.779068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.094 4.094 3 C 0.098 3.902 4 N -0.483 5.483 5 C 0.089 3.911 6 C -0.141 4.141 7 C -0.100 4.100 8 C 0.570 3.430 9 O -0.566 6.566 10 N -0.618 5.618 11 C 0.145 3.855 12 C -0.110 4.110 13 H 0.051 0.949 14 C -0.113 4.113 15 H 0.100 0.900 16 C 0.125 3.875 17 C 0.175 3.825 18 H 0.077 0.923 19 C -0.126 4.126 20 C -0.102 4.102 21 C -0.072 4.072 22 H 0.094 0.906 23 C 0.161 3.839 24 N -0.612 5.612 25 C -0.344 4.344 26 H 0.061 0.939 27 C -0.074 4.074 28 N -0.943 5.943 29 Si 1.093 2.907 30 H -0.298 1.298 31 H -0.293 1.293 32 H -0.275 1.275 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.194 0.806 37 H 0.182 0.818 38 H 0.138 0.862 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.039 0.961 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.014 0.986 48 H 0.025 0.975 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.530 13.414 -5.803 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.096 4.096 3 C -0.059 4.059 4 N -0.191 5.191 5 C -0.066 4.066 6 C -0.161 4.161 7 C -0.111 4.111 8 C 0.359 3.641 9 O -0.446 6.446 10 N -0.352 5.352 11 C 0.025 3.975 12 C -0.130 4.130 13 H 0.069 0.931 14 C -0.134 4.134 15 H 0.118 0.882 16 C 0.004 3.996 17 C 0.069 3.931 18 H 0.095 0.905 19 C -0.165 4.165 20 C -0.139 4.139 21 C -0.092 4.092 22 H 0.112 0.888 23 C 0.036 3.964 24 N -0.337 5.337 25 C -0.473 4.473 26 H 0.078 0.922 27 C -0.271 4.271 28 N -0.587 5.587 29 Si 0.921 3.079 30 H -0.225 1.225 31 H -0.220 1.220 32 H -0.200 1.200 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.211 0.789 37 H 0.199 0.801 38 H 0.156 0.844 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.058 0.942 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.031 0.969 48 H 0.043 0.957 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.677 13.741 -4.013 18.474 hybrid contribution -0.415 -1.019 -0.949 1.453 sum -12.092 12.722 -4.962 18.240 Atomic orbital electron populations 1.20770 0.88345 1.03556 1.03526 1.21251 0.98860 0.92235 0.97290 1.23167 0.89526 0.98019 0.95236 1.67632 1.08940 1.31870 1.10706 1.23049 1.01647 0.86549 0.95389 1.22526 0.93568 1.00971 0.99085 1.20276 0.94481 0.93384 1.02910 1.18157 0.83094 0.83463 0.79382 1.90739 1.27925 1.82935 1.43034 1.50597 1.35421 1.10834 1.38338 1.21704 0.95926 0.78628 1.01239 1.20991 0.97298 0.95430 0.99278 0.93057 1.22781 1.00010 0.92818 0.97794 0.88200 1.21671 0.89220 0.98767 0.89982 1.21417 0.92043 0.92233 0.87403 0.90458 1.22767 0.97038 0.98083 0.98600 1.22036 0.97488 1.01410 0.92990 1.21523 0.96341 0.94401 0.96963 0.88753 1.22086 0.89990 0.87635 0.96719 1.45778 1.27789 1.22261 1.37909 1.20022 1.07317 0.98934 1.21068 0.92159 1.26459 1.00980 0.94400 1.05218 1.70966 1.41672 1.16981 1.29034 0.83061 0.75681 0.74815 0.74296 1.22485 1.22024 1.20042 0.90244 0.88046 0.92759 0.78940 0.80070 0.84449 0.88688 0.91343 0.91996 0.89657 0.89555 0.94163 0.89719 0.91404 0.96854 0.95651 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 9.11 71.24 0.65 -1.37 16 2 C -0.09 -2.13 5.93 -19.50 -0.12 -2.25 16 3 C 0.10 1.94 10.87 84.68 0.92 2.86 16 4 N -0.48 -11.15 10.34 -196.00 -2.03 -13.18 16 5 C 0.09 2.03 11.17 84.67 0.95 2.98 16 6 C -0.14 -3.64 8.64 22.63 0.20 -3.45 16 7 C -0.10 -2.74 5.46 -19.88 -0.11 -2.84 16 8 C 0.57 18.13 6.80 86.88 0.59 18.72 16 9 O -0.57 -20.76 15.63 -3.77 -0.06 -20.82 16 10 N -0.62 -18.48 3.50 -809.13 -2.83 -21.31 16 11 C 0.14 4.14 7.08 83.85 0.59 4.74 16 12 C -0.11 -3.47 2.27 -11.77 -0.03 -3.50 16 13 H 0.05 2.15 6.09 -2.38 -0.01 2.13 16 14 C -0.11 -3.17 2.35 -10.28 -0.02 -3.19 16 15 H 0.10 2.29 6.31 -2.39 -0.02 2.28 16 16 C 0.12 3.43 5.40 85.30 0.46 3.89 16 17 C 0.18 5.93 4.42 45.21 0.20 6.13 16 18 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 19 C -0.13 -3.64 5.45 31.97 0.17 -3.46 16 20 C -0.10 -2.57 5.30 31.46 0.17 -2.40 16 21 C -0.07 -2.25 4.18 -10.12 -0.04 -2.30 16 22 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 23 C 0.16 6.90 3.87 87.23 0.34 7.24 16 24 N -0.61 -27.15 1.81 -653.46 -1.18 -28.33 16 25 C -0.34 -17.92 9.71 84.03 0.82 -17.10 16 26 H 0.06 3.13 8.04 -2.91 -0.02 3.11 16 27 C -0.07 -4.06 4.67 84.86 0.40 -3.66 16 28 N -0.94 -56.16 12.67 21.65 0.27 -55.89 16 29 Si 1.09 51.02 30.04 68.60 2.06 53.08 16 30 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 31 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 32 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.10 1.24 8.11 -2.38 -0.02 1.22 16 35 H 0.05 1.27 6.51 -2.39 -0.02 1.25 16 36 H 0.19 2.37 8.06 -2.91 -0.02 2.34 16 37 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 38 H 0.14 3.75 6.06 -2.91 -0.02 3.74 16 39 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 1.94 6.12 -2.39 -0.01 1.92 16 42 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.39 7.32 -2.39 -0.02 1.37 16 45 H 0.08 1.70 6.92 -2.39 -0.02 1.69 16 46 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 47 H 0.01 0.62 6.58 -2.38 -0.02 0.60 16 48 H 0.02 1.28 6.85 -2.39 -0.02 1.27 16 49 H 0.26 15.35 6.31 -92.71 -0.58 14.77 16 Total: -1.00 -68.89 370.46 3.52 -65.37 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 1.15 Total: 20.02 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 6.13 Total: 1.05 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -5.76 Total: -118.70 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.06 Total: -20.82 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.06 Total: 53.08 kcal Total: -68.89 3.52 -65.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087353046.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.565 kcal (2) G-P(sol) polarization free energy of solvation -68.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds