Wall clock time and date at job start Wed Apr 1 2020 00:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38166 * 120.50345 * 2 1 4 4 N 1.31794 * 120.89844 * 179.74291 * 3 2 1 5 5 C 1.31829 * 122.04748 * 0.26264 * 4 3 2 6 6 C 1.38121 * 120.90003 * 359.97438 * 5 4 3 7 7 C 1.39805 * 120.49922 * 180.25164 * 2 1 3 8 8 C 1.48148 * 120.91923 * 359.97049 * 7 2 1 9 9 O 1.21515 * 120.00371 * 36.94296 * 8 7 2 10 10 N 1.34772 * 119.99794 * 216.93337 * 8 7 2 11 11 C 1.49467 * 125.97337 * 185.17220 * 10 8 7 12 12 C 1.48555 * 103.90716 * 175.57308 * 11 10 8 13 13 H 1.09008 * 104.27586 * 287.56230 * 12 11 10 14 14 C 1.56683 * 103.43131 * 33.59685 * 12 11 10 15 15 H 1.09003 * 114.16713 * 70.45059 * 14 12 11 16 16 C 1.49386 * 125.97474 * 4.87331 * 10 8 7 17 17 C 1.53756 * 101.01356 * 192.13764 * 14 12 11 18 18 H 1.08998 * 113.68620 * 154.47044 * 17 14 12 19 19 C 1.53932 * 108.94995 * 26.14231 * 17 14 12 20 20 C 1.52079 * 109.87904 * 284.43618 * 19 17 14 21 21 C 1.49494 * 130.88780 * 164.10308 * 12 11 10 22 22 H 1.09000 * 114.04967 * 21.00183 * 21 12 11 23 23 C 1.56657 * 108.17132 * 253.95464 * 21 12 11 24 24 N 1.48556 * 105.79949 * 291.64010 * 23 21 12 25 25 C 1.36933 * 123.38907 * 214.53762 * 24 23 21 26 26 H 1.08001 * 119.99959 * 157.59168 * 25 24 23 27 27 C 1.38813 * 120.00073 * 337.59617 * 25 24 23 28 28 N 1.31621 * 120.00146 * 351.76144 * 27 25 24 29 29 Si 1.86794 * 120.00194 * 171.76097 * 27 25 24 30 30 H 1.48506 * 109.47222 * 359.97438 * 29 27 25 31 31 H 1.48504 * 109.47547 * 119.99733 * 29 27 25 32 32 H 1.48499 * 109.47586 * 239.99801 * 29 27 25 33 33 H 1.08993 * 109.47268 * 95.39547 * 1 2 3 34 34 H 1.09000 * 109.47387 * 215.40079 * 1 2 3 35 35 H 1.09000 * 109.46891 * 335.39434 * 1 2 3 36 36 H 1.08004 * 119.55121 * 0.02562 * 3 2 1 37 37 H 1.08000 * 119.54993 * 180.02562 * 5 4 3 38 38 H 1.08003 * 120.50088 * 179.97438 * 6 5 4 39 39 H 1.09002 * 110.54268 * 294.18036 * 11 10 8 40 40 H 1.09001 * 110.54054 * 56.82518 * 11 10 8 41 41 H 1.08998 * 110.75716 * 271.47013 * 16 10 8 42 42 H 1.09000 * 110.75773 * 34.84271 * 16 10 8 43 43 H 1.08998 * 109.56684 * 43.96217 * 19 17 14 44 44 H 1.08993 * 109.55964 * 164.30072 * 19 17 14 45 45 H 1.08994 * 109.34731 * 279.38545 * 20 19 17 46 46 H 1.09007 * 111.21721 * 157.49128 * 20 19 17 47 47 H 1.08991 * 110.05157 * 172.77618 * 23 21 12 48 48 H 1.09002 * 110.76269 * 50.87455 * 23 21 12 49 49 H 0.97002 * 120.00099 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1904 0.0000 4 7 3.5262 1.1995 0.0051 5 6 4.2334 0.0870 0.0052 6 6 3.6137 -1.1474 0.0005 7 6 2.2165 -1.2046 -0.0053 8 6 1.5078 -2.5055 -0.0103 9 8 0.4782 -2.6342 -0.6429 10 7 2.0050 -3.5465 0.6865 11 6 1.4643 -4.9399 0.6888 12 6 2.4342 -5.6978 1.5205 13 1 3.3208 -5.7803 0.8917 14 6 2.8972 -4.6479 2.5874 15 1 2.1330 -4.3899 3.3206 16 6 3.1966 -3.5108 1.5867 17 6 4.1061 -5.3701 3.2049 18 1 4.8418 -4.6959 3.6434 19 6 4.6904 -6.3443 2.1662 20 6 3.8005 -7.5722 2.0508 21 6 2.3261 -7.0388 2.1724 22 1 1.5653 -7.6853 1.7350 23 6 2.1425 -6.8199 3.7127 24 7 3.4335 -6.2695 4.1997 25 6 3.9566 -6.5537 5.4329 26 1 5.0167 -6.4445 5.6080 27 6 3.1244 -6.9823 6.4579 28 7 1.8181 -6.9612 6.2974 29 14 3.8582 -7.5891 8.0649 30 1 5.3395 -7.5138 7.9923 31 1 3.3732 -6.7399 9.1825 32 1 3.4453 -8.9964 8.2975 33 1 -0.3633 -0.0966 -1.0230 34 1 -0.3634 -0.8377 0.5953 35 1 -0.3633 0.9344 0.4279 36 1 1.6692 2.1263 0.0004 37 1 5.3120 0.1415 0.0099 38 1 4.1995 -2.0548 0.0003 39 1 0.4724 -4.9646 1.1399 40 1 1.4323 -5.3394 -0.3249 41 1 4.1095 -3.7155 1.0275 42 1 3.2639 -2.5519 2.1007 43 1 4.7414 -5.8541 1.1940 44 1 5.6897 -6.6508 2.4750 45 1 4.0219 -8.2569 2.8694 46 1 3.9417 -8.0732 1.0930 47 1 1.9327 -7.7705 4.2029 48 1 1.3367 -6.1126 3.9091 49 1 1.2366 -7.2604 7.0138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087353047.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:32 Heat of formation + Delta-G solvation = 84.876375 kcal Electronic energy + Delta-G solvation = -30959.160621 eV Core-core repulsion = 27081.761887 eV Total energy + Delta-G solvation = -3877.398734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.44371 -40.57330 -38.75589 -36.13306 -33.65783 -33.33978 -32.46612 -31.04662 -30.15446 -29.81973 -27.98490 -27.43147 -25.73533 -24.85570 -23.24513 -22.45046 -21.77688 -21.15095 -20.60419 -19.82790 -17.66126 -17.47962 -16.94091 -16.71662 -15.98466 -15.77960 -15.46520 -15.06435 -14.92945 -14.41130 -14.40027 -14.22602 -14.04644 -13.63351 -13.31253 -13.16084 -12.89201 -12.68349 -12.56373 -12.38986 -12.20052 -11.80712 -11.59325 -11.36304 -11.22519 -11.10476 -11.04779 -10.82304 -10.65150 -10.55557 -10.34395 -10.21494 -10.10387 -9.94815 -9.69478 -9.53641 -9.29341 -9.16554 -9.01407 -8.65013 -8.55956 -6.75860 -5.80849 -3.20249 0.61783 0.84474 2.66331 2.80709 3.34076 3.41530 3.43030 3.57667 4.14611 4.20624 4.38470 4.52908 4.59012 4.60026 4.73927 4.83267 4.97890 5.12923 5.28346 5.31369 5.35165 5.42445 5.47037 5.49415 5.53101 5.53816 5.61638 5.67822 5.75160 5.78937 5.83584 5.86049 5.97173 5.99531 6.05998 6.07059 6.18995 6.26867 6.34158 6.38669 6.45940 6.62310 6.68760 6.86375 6.93335 7.06013 7.36110 7.43375 7.57917 7.67636 7.75011 8.02115 8.24392 9.12082 9.72547 10.39608 11.29287 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.003111 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.182003 B = 8998.366251 C = 9389.519963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.085 4.085 3 C 0.094 3.906 4 N -0.470 5.470 5 C 0.087 3.913 6 C -0.137 4.137 7 C -0.082 4.082 8 C 0.571 3.429 9 O -0.533 6.533 10 N -0.613 5.613 11 C 0.138 3.862 12 C -0.137 4.137 13 H 0.073 0.927 14 C -0.111 4.111 15 H 0.105 0.895 16 C 0.103 3.897 17 C 0.169 3.831 18 H 0.078 0.922 19 C -0.127 4.127 20 C -0.097 4.097 21 C -0.098 4.098 22 H 0.079 0.921 23 C 0.189 3.811 24 N -0.598 5.598 25 C -0.238 4.238 26 H 0.069 0.931 27 C 0.000 4.000 28 N -0.912 5.912 29 Si 0.904 3.096 30 H -0.279 1.279 31 H -0.291 1.291 32 H -0.290 1.290 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.143 0.857 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.029 0.971 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.364 9.442 -13.410 16.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.088 4.088 3 C -0.064 4.064 4 N -0.178 5.178 5 C -0.069 4.069 6 C -0.158 4.158 7 C -0.093 4.093 8 C 0.359 3.641 9 O -0.411 6.411 10 N -0.347 5.347 11 C 0.017 3.983 12 C -0.155 4.155 13 H 0.091 0.909 14 C -0.131 4.131 15 H 0.123 0.877 16 C -0.020 4.020 17 C 0.062 3.938 18 H 0.096 0.904 19 C -0.166 4.166 20 C -0.134 4.134 21 C -0.118 4.118 22 H 0.098 0.902 23 C 0.065 3.935 24 N -0.322 5.322 25 C -0.367 4.367 26 H 0.087 0.913 27 C -0.198 4.198 28 N -0.557 5.557 29 Si 0.735 3.265 30 H -0.204 1.204 31 H -0.218 1.218 32 H -0.217 1.217 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.161 0.839 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.089 0.911 48 H 0.047 0.953 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.159 10.148 -13.599 17.105 hybrid contribution -0.003 -1.108 0.939 1.453 sum 2.155 9.040 -12.660 15.704 Atomic orbital electron populations 1.20776 0.89268 1.02941 1.03659 1.21053 0.98191 0.92537 0.97038 1.22681 0.89794 0.97224 0.96692 1.67536 1.08255 1.31831 1.10199 1.22717 1.00546 0.87185 0.96459 1.22500 0.93846 1.00474 0.98946 1.20240 0.94010 0.93671 1.01348 1.17815 0.84150 0.82672 0.79427 1.90775 1.23170 1.83381 1.43734 1.49668 1.30524 1.09522 1.44982 1.20829 0.97989 0.79752 0.99716 1.21577 0.99737 0.96592 0.97616 0.90929 1.23802 1.01009 0.92631 0.95684 0.87735 1.22772 0.87319 1.00645 0.91227 1.21598 0.92166 0.90207 0.89861 0.90387 1.22188 0.99166 0.97286 0.97962 1.22105 0.94083 0.97380 0.99866 1.22364 0.96930 0.92868 0.99646 0.90236 1.21732 0.87142 0.98665 0.85972 1.45503 1.22328 1.50605 1.13762 1.19137 0.91637 1.39603 0.86359 0.91313 1.25007 0.95301 1.01990 0.97481 1.69947 1.01631 1.51488 1.32642 0.86180 0.78337 0.78174 0.83828 1.20418 1.21791 1.21738 0.89945 0.90641 0.91322 0.82205 0.82142 0.83943 0.91285 0.91210 0.90863 0.90612 0.93357 0.92792 0.90779 0.93846 0.91066 0.95263 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 8.78 36.00 0.32 -0.84 16 2 C -0.09 -0.99 5.93 -104.06 -0.62 -1.61 16 3 C 0.09 0.98 10.84 -17.59 -0.19 0.79 16 4 N -0.47 -5.35 10.33 -13.31 -0.14 -5.49 16 5 C 0.09 0.87 11.17 -17.60 -0.20 0.67 16 6 C -0.14 -1.45 8.25 -39.03 -0.32 -1.77 16 7 C -0.08 -1.03 5.45 -104.64 -0.57 -1.60 16 8 C 0.57 8.45 7.02 -12.19 -0.09 8.36 16 9 O -0.53 -9.21 15.45 5.35 0.08 -9.13 16 10 N -0.61 -8.63 3.42 -171.53 -0.59 -9.21 16 11 C 0.14 1.99 6.84 -4.56 -0.03 1.96 16 12 C -0.14 -2.03 2.34 -92.53 -0.22 -2.25 16 13 H 0.07 1.03 3.84 -51.92 -0.20 0.83 16 14 C -0.11 -1.78 2.91 -87.51 -0.25 -2.04 16 15 H 0.10 2.04 6.99 -51.93 -0.36 1.68 16 16 C 0.10 1.31 4.61 -1.71 -0.01 1.30 16 17 C 0.17 2.98 4.25 -65.08 -0.28 2.70 16 18 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 19 C -0.13 -1.96 5.44 -26.71 -0.15 -2.10 16 20 C -0.10 -1.57 5.61 -24.88 -0.14 -1.71 16 21 C -0.10 -1.64 4.52 -88.06 -0.40 -2.04 16 22 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 23 C 0.19 4.12 4.04 -0.93 0.00 4.12 16 24 N -0.60 -13.40 2.21 -158.03 -0.35 -13.75 16 25 C -0.24 -6.09 10.05 -15.06 -0.15 -6.24 16 26 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 27 C 0.00 0.00 5.28 -17.43 -0.09 -0.09 16 28 N -0.91 -25.35 10.89 55.49 0.60 -24.74 16 29 Si 0.90 21.10 29.56 -169.99 -5.02 16.07 16 30 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 31 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 32 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.95 6.88 -51.93 -0.36 0.59 16 35 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 36 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.14 1.27 6.02 -52.48 -0.32 0.96 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.80 6.54 -51.93 -0.34 0.46 16 42 H 0.08 0.94 7.20 -51.93 -0.37 0.57 16 43 H 0.05 0.64 5.62 -51.93 -0.29 0.35 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.41 7.66 -51.93 -0.40 1.01 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 1.77 6.92 -51.93 -0.36 1.41 16 48 H 0.03 0.71 7.10 -51.93 -0.37 0.34 16 49 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 368.61 15.07 5.55 5.55 Total: -1.00 -29.95 368.61 -10.38 -40.32 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.14 Total: 2.75 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.38 Total: -2.39 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.47 Total: -53.19 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.95 -10.38 -40.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087353047.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.198 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds