Wall clock time and date at job start Wed Apr 1 2020 00:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38174 * 120.49913 * 2 1 4 4 N 1.31793 * 120.89341 * 179.97438 * 3 2 1 5 5 C 1.31829 * 122.05124 * 359.97438 * 4 3 2 6 6 C 1.38131 * 120.89627 * 359.97433 * 5 4 3 7 7 C 1.39800 * 120.49830 * 179.97438 * 2 1 3 8 8 C 1.48147 * 120.92388 * 0.04518 * 7 2 1 9 9 O 1.21520 * 119.99813 * 318.10062 * 8 7 2 10 10 N 1.34770 * 119.99928 * 138.09431 * 8 7 2 11 11 C 1.48161 * 127.83405 * 184.60786 * 10 8 7 12 12 C 1.54729 * 104.40091 * 140.38789 * 11 10 8 13 13 H 1.09004 * 110.96352 * 264.53169 * 12 11 10 14 14 C 1.54164 * 104.97048 * 24.26426 * 12 11 10 15 15 H 1.08992 * 110.99856 * 239.65033 * 14 12 11 16 16 C 1.48146 * 127.83973 * 4.93267 * 10 8 7 17 17 C 1.53252 * 109.37100 * 116.27246 * 14 12 11 18 18 H 1.08999 * 110.52086 * 181.96689 * 17 14 12 19 19 C 1.54472 * 108.07712 * 61.05806 * 17 14 12 20 20 C 1.52913 * 109.47299 * 298.90526 * 19 17 14 21 21 C 1.52971 * 109.42301 * 142.02787 * 12 11 10 22 22 H 1.09005 * 109.64070 * 66.00583 * 21 12 11 23 23 C 1.53602 * 109.12015 * 305.26394 * 21 12 11 24 24 N 1.47534 * 107.17504 * 301.04531 * 23 21 12 25 25 C 1.36939 * 122.48306 * 179.79056 * 24 23 21 26 26 H 1.07997 * 120.00280 * 179.06029 * 25 24 23 27 27 C 1.38811 * 119.99629 * 359.06177 * 25 24 23 28 28 N 1.31619 * 120.00293 * 0.02562 * 27 25 24 29 29 Si 1.86805 * 120.00143 * 179.97438 * 27 25 24 30 30 H 1.48507 * 109.46768 * 0.02562 * 29 27 25 31 31 H 1.48496 * 109.47145 * 119.99708 * 29 27 25 32 32 H 1.48495 * 109.47448 * 240.00519 * 29 27 25 33 33 H 1.09000 * 109.47397 * 95.72480 * 1 2 3 34 34 H 1.08997 * 109.47204 * 215.72574 * 1 2 3 35 35 H 1.09004 * 109.47163 * 335.72830 * 1 2 3 36 36 H 1.08001 * 119.55044 * 0.25548 * 3 2 1 37 37 H 1.07991 * 119.55681 * 180.02562 * 5 4 3 38 38 H 1.08000 * 120.50077 * 180.02562 * 6 5 4 39 39 H 1.09002 * 110.41508 * 259.19782 * 11 10 8 40 40 H 1.08994 * 110.41927 * 21.65446 * 11 10 8 41 41 H 1.08995 * 110.40547 * 338.24925 * 16 10 8 42 42 H 1.09000 * 110.40421 * 100.56122 * 16 10 8 43 43 H 1.09009 * 109.30903 * 179.03612 * 19 17 14 44 44 H 1.08998 * 109.73421 * 59.03705 * 19 17 14 45 45 H 1.09001 * 109.38695 * 240.76181 * 20 19 17 46 46 H 1.08996 * 109.38379 * 121.08314 * 20 19 17 47 47 H 1.08994 * 110.00123 * 59.54365 * 23 21 12 48 48 H 1.09003 * 110.00002 * 180.94066 * 23 21 12 49 49 H 0.96999 * 120.00313 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1906 0.0000 4 7 3.5262 1.1996 0.0005 5 6 4.2334 0.0871 0.0015 6 6 3.6137 -1.1474 0.0027 7 6 2.2165 -1.2046 0.0005 8 6 1.5078 -2.5056 0.0001 9 8 0.5288 -2.6644 0.7023 10 7 1.9488 -3.5129 -0.7791 11 6 1.3265 -4.8415 -0.9856 12 6 1.5186 -5.1261 -2.4943 13 1 0.6340 -4.8365 -3.0615 14 6 2.7364 -4.2762 -2.9080 15 1 2.4689 -3.5647 -3.6891 16 6 3.1692 -3.5453 -1.6183 17 6 3.8727 -5.2011 -3.3575 18 1 4.7564 -4.6202 -3.6217 19 6 3.3774 -6.0118 -4.5755 20 6 2.1701 -6.8573 -4.1682 21 6 1.8302 -6.6101 -2.6963 22 1 0.9633 -7.2081 -2.4151 23 6 3.0405 -6.9924 -1.8313 24 7 4.1660 -6.1376 -2.2546 25 6 5.4062 -6.2164 -1.6794 26 1 6.2059 -5.5814 -2.0310 27 6 5.6355 -7.1124 -0.6443 28 7 4.6610 -7.8867 -0.2161 29 14 7.3275 -7.2205 0.1400 30 1 8.2408 -6.2518 -0.5180 31 1 7.2242 -6.8990 1.5860 32 1 7.8624 -8.5960 -0.0244 33 1 -0.3634 -0.1025 -1.0225 34 1 -0.3633 -0.8343 0.6000 35 1 -0.3634 0.9369 0.4224 36 1 1.6691 2.1263 0.0042 37 1 5.3120 0.1415 0.0023 38 1 4.1994 -2.0547 0.0039 39 1 1.8350 -5.5968 -0.3863 40 1 0.2661 -4.8076 -0.7362 41 1 3.4994 -2.5323 -1.8482 42 1 3.9624 -4.0976 -1.1144 43 1 4.1776 -6.6654 -4.9230 44 1 3.0903 -5.3322 -5.3779 45 1 2.4018 -7.9125 -4.3136 46 1 1.3144 -6.5879 -4.7872 47 1 2.8229 -6.8014 -0.7805 48 1 3.2856 -8.0445 -1.9772 49 1 4.8211 -8.5126 0.5074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087353048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:38 Heat of formation + Delta-G solvation = 41.882681 kcal Electronic energy + Delta-G solvation = -31589.737683 eV Core-core repulsion = 27710.474603 eV Total energy + Delta-G solvation = -3879.263081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.95107 -40.18058 -38.48358 -35.70304 -33.52596 -33.47343 -32.38108 -31.61133 -30.23967 -29.83876 -27.57017 -27.00714 -25.48106 -25.13403 -23.38587 -22.31017 -21.99599 -21.15613 -20.58340 -19.66912 -17.72784 -17.19978 -16.69924 -16.25720 -15.74274 -15.67492 -15.30554 -15.19022 -14.56872 -14.46520 -14.32956 -14.15721 -14.07343 -13.46962 -13.13493 -12.93496 -12.80431 -12.66126 -12.27424 -12.19447 -12.04717 -11.89951 -11.67123 -11.50552 -11.28389 -11.15529 -10.99945 -10.73949 -10.63489 -10.55450 -10.21914 -10.15307 -9.90096 -9.87612 -9.70493 -9.34650 -9.30882 -9.27370 -9.00728 -8.58353 -8.32975 -6.93240 -5.75586 -3.12923 0.79857 0.99273 2.85094 3.11757 3.33647 3.39718 3.42624 3.71275 4.31882 4.40705 4.45747 4.69862 4.75620 4.88424 4.93486 5.01510 5.11604 5.33166 5.36882 5.41211 5.47879 5.54840 5.57847 5.62566 5.64823 5.69981 5.71020 5.78566 5.86671 5.88721 5.94654 5.98900 6.05323 6.19088 6.25574 6.27691 6.32011 6.36004 6.46011 6.53867 6.54932 6.63567 6.64280 6.73554 6.90670 6.95458 7.56498 7.61044 7.78847 7.81652 7.83064 8.23162 8.25560 9.16775 9.77582 10.32034 11.29607 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011251 B = 0.004376 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.164937 B = 6397.487676 C = 7576.777011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C 0.090 3.910 4 N -0.472 5.472 5 C 0.088 3.912 6 C -0.135 4.135 7 C -0.078 4.078 8 C 0.575 3.425 9 O -0.542 6.542 10 N -0.603 5.603 11 C 0.106 3.894 12 C -0.080 4.080 13 H 0.066 0.934 14 C -0.110 4.110 15 H 0.069 0.931 16 C 0.099 3.901 17 C 0.178 3.822 18 H 0.069 0.931 19 C -0.130 4.130 20 C -0.100 4.100 21 C -0.111 4.111 22 H 0.066 0.934 23 C 0.196 3.804 24 N -0.594 5.594 25 C -0.239 4.239 26 H 0.076 0.924 27 C -0.003 4.003 28 N -0.919 5.919 29 Si 0.905 3.095 30 H -0.280 1.280 31 H -0.292 1.292 32 H -0.291 1.291 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.147 0.853 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.048 0.952 45 H 0.056 0.944 46 H 0.044 0.956 47 H 0.059 0.941 48 H 0.048 0.952 49 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 11.351 -5.017 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 C -0.067 4.067 4 N -0.181 5.181 5 C -0.069 4.069 6 C -0.155 4.155 7 C -0.089 4.089 8 C 0.364 3.636 9 O -0.421 6.421 10 N -0.334 5.334 11 C -0.015 4.015 12 C -0.099 4.099 13 H 0.085 0.915 14 C -0.131 4.131 15 H 0.087 0.913 16 C -0.023 4.023 17 C 0.069 3.931 18 H 0.087 0.913 19 C -0.170 4.170 20 C -0.138 4.138 21 C -0.131 4.131 22 H 0.084 0.916 23 C 0.072 3.928 24 N -0.318 5.318 25 C -0.367 4.367 26 H 0.094 0.906 27 C -0.200 4.200 28 N -0.566 5.566 29 Si 0.736 3.264 30 H -0.206 1.206 31 H -0.219 1.219 32 H -0.218 1.218 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.176 0.824 37 H 0.179 0.821 38 H 0.165 0.835 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.077 0.923 48 H 0.066 0.934 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.154 11.989 -4.404 14.178 hybrid contribution 0.570 -1.039 0.330 1.230 sum -5.584 10.950 -4.075 12.949 Atomic orbital electron populations 1.21013 0.89659 1.04573 1.03315 1.20979 0.98022 0.92468 0.97602 1.22641 0.89845 0.97115 0.97124 1.67524 1.08226 1.31861 1.10463 1.22723 1.00555 0.87155 0.96417 1.22574 0.93913 1.00702 0.98352 1.20203 0.94031 0.93737 1.00906 1.17700 0.83704 0.82501 0.79726 1.90704 1.27580 1.82302 1.41476 1.48899 1.26111 1.14399 1.44017 1.22786 0.98427 0.83573 0.96764 1.21957 0.97152 0.96264 0.94541 0.91547 1.22693 0.97137 0.97145 0.96172 0.91269 1.22937 0.87877 1.00119 0.91350 1.20713 0.93996 0.90211 0.88181 0.91272 1.22233 0.97808 0.98884 0.98072 1.21334 0.97108 0.99726 0.95635 1.21787 1.00557 0.94048 0.96678 0.91572 1.21235 0.82403 0.94143 0.95005 1.44556 1.08895 1.41049 1.37317 1.19265 0.87310 1.17807 1.12341 0.90587 1.24765 0.97474 0.98638 0.99077 1.70007 1.30059 1.26383 1.30163 0.86162 0.83757 0.77437 0.79083 1.20551 1.21869 1.21847 0.91045 0.88296 0.91220 0.82408 0.82116 0.83535 0.88491 0.91137 0.91705 0.87208 0.92244 0.93346 0.92530 0.93672 0.92344 0.93358 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.56 36.00 0.34 -1.13 16 2 C -0.09 -1.14 5.93 -104.06 -0.62 -1.76 16 3 C 0.09 1.06 10.84 -17.59 -0.19 0.87 16 4 N -0.47 -6.10 10.33 -13.31 -0.14 -6.24 16 5 C 0.09 1.07 11.17 -17.59 -0.20 0.87 16 6 C -0.14 -1.81 7.91 -39.02 -0.31 -2.12 16 7 C -0.08 -1.15 5.47 -104.65 -0.57 -1.72 16 8 C 0.58 9.88 7.22 -12.19 -0.09 9.79 16 9 O -0.54 -10.54 14.88 5.35 0.08 -10.46 16 10 N -0.60 -10.16 3.31 -170.06 -0.56 -10.72 16 11 C 0.11 1.82 6.36 -2.22 -0.01 1.80 16 12 C -0.08 -1.25 3.10 -89.12 -0.28 -1.53 16 13 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.11 -1.70 3.15 -89.13 -0.28 -1.98 16 15 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 16 C 0.10 1.58 4.89 -2.39 -0.01 1.57 16 17 C 0.18 3.09 3.04 -66.41 -0.20 2.89 16 18 H 0.07 1.18 8.01 -51.93 -0.42 0.77 16 19 C -0.13 -2.06 5.91 -26.00 -0.15 -2.21 16 20 C -0.10 -1.56 5.65 -26.74 -0.15 -1.71 16 21 C -0.11 -1.88 2.89 -90.28 -0.26 -2.14 16 22 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 23 C 0.20 4.19 4.02 -3.16 -0.01 4.18 16 24 N -0.59 -12.71 1.99 -162.60 -0.32 -13.03 16 25 C -0.24 -5.78 9.25 -15.06 -0.14 -5.92 16 26 H 0.08 1.79 7.80 -52.49 -0.41 1.39 16 27 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 28 N -0.92 -24.73 9.82 55.49 0.54 -24.18 16 29 Si 0.90 20.74 29.55 -169.99 -5.02 15.72 16 30 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 31 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 32 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 1.38 5.64 -51.93 -0.29 1.09 16 35 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 36 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.15 1.94 6.62 -52.49 -0.35 1.59 16 39 H 0.10 1.91 5.35 -51.93 -0.28 1.64 16 40 H 0.07 1.18 7.92 -51.93 -0.41 0.77 16 41 H 0.06 0.92 5.99 -51.93 -0.31 0.61 16 42 H 0.11 2.09 6.32 -51.93 -0.33 1.76 16 43 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.06 1.40 4.85 -51.93 -0.25 1.15 16 48 H 0.05 1.20 7.30 -51.93 -0.38 0.82 16 49 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -28.48 366.48 -10.33 -38.81 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.21 Total: 5.00 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.23 Total: -0.41 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.48 Total: -54.18 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.48 -10.33 -38.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087353048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.694 kcal (2) G-P(sol) polarization free energy of solvation -28.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds