Wall clock time and date at job start Wed Apr 1 2020 01:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47188 * 2 1 4 4 H 1.08994 * 110.00006 * 303.72077 * 3 2 1 5 5 C 1.54334 * 109.98879 * 182.68764 * 3 2 1 6 6 H 1.09006 * 110.51786 * 336.97698 * 5 3 2 7 7 N 1.46497 * 110.85253 * 100.19598 * 5 3 2 8 8 C 1.34778 * 120.00585 * 200.14696 * 7 5 3 9 9 O 1.21649 * 119.99171 * 5.14357 * 8 7 5 10 10 C 1.47056 * 120.00150 * 185.14644 * 8 7 5 11 11 C 1.35861 * 125.43289 * 4.73726 * 10 8 7 12 12 C 1.41591 * 107.72683 * 179.97438 * 11 10 8 13 13 C 1.40102 * 133.37686 * 180.02562 * 12 11 10 14 14 C 1.36437 * 119.83064 * 179.97438 * 13 12 11 15 15 C 1.38945 * 120.61400 * 359.97438 * 14 13 12 16 16 C 1.37672 * 120.64993 * 0.02562 * 15 14 13 17 17 C 1.39236 * 119.80650 * 359.97438 * 16 15 14 18 18 N 1.37481 * 133.17598 * 180.34870 * 17 16 15 19 19 C 1.46498 * 125.60635 * 359.93334 * 18 17 16 20 20 C 1.55153 * 103.02137 * 218.66581 * 5 3 2 21 21 C 1.54916 * 101.58254 * 35.30621 * 20 5 3 22 22 N 1.47019 * 109.88286 * 64.81978 * 3 2 1 23 23 C 1.36937 * 125.65025 * 298.39567 * 22 3 2 24 24 H 1.07999 * 119.99884 * 138.42765 * 23 22 3 25 25 C 1.38810 * 119.99885 * 318.42729 * 23 22 3 26 26 N 1.31610 * 120.00373 * 167.13680 * 25 23 22 27 27 Si 1.86803 * 119.99935 * 347.13941 * 25 23 22 28 28 H 1.48502 * 109.47101 * 89.28350 * 27 25 23 29 29 H 1.48504 * 109.47039 * 329.28465 * 27 25 23 30 30 H 1.48498 * 109.47125 * 209.28603 * 27 25 23 31 31 H 1.08989 * 109.47159 * 171.22347 * 1 2 3 32 32 H 1.09000 * 109.46949 * 291.22327 * 1 2 3 33 33 H 1.09002 * 109.46772 * 51.21984 * 1 2 3 34 34 H 1.08995 * 109.46723 * 239.99781 * 2 1 3 35 35 H 1.09003 * 109.46708 * 120.00358 * 2 1 3 36 36 H 0.97002 * 119.99394 * 20.14836 * 7 5 3 37 37 H 1.08007 * 126.13635 * 0.02562 * 11 10 8 38 38 H 1.08004 * 120.08979 * 359.95114 * 13 12 11 39 39 H 1.07993 * 119.69814 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.67954 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.09840 * 180.02562 * 16 15 14 42 42 H 1.08992 * 109.47185 * 269.95352 * 19 18 17 43 43 H 1.09001 * 109.47271 * 29.96085 * 19 18 17 44 44 H 1.09003 * 109.46788 * 149.95391 * 19 18 17 45 45 H 1.08996 * 111.00544 * 277.23686 * 20 5 3 46 46 H 1.09002 * 111.00725 * 153.37813 * 20 5 3 47 47 H 1.08998 * 110.36579 * 204.15468 * 21 20 5 48 48 H 1.09000 * 110.36125 * 81.82883 * 21 20 5 49 49 H 0.96993 * 120.00897 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6283 1.9835 -0.8519 5 6 3.5819 1.4569 -0.0680 6 1 3.9894 0.5148 0.2989 7 7 4.0412 1.7252 -1.4330 8 6 5.2932 1.3887 -1.8012 9 8 6.0104 0.7786 -1.0309 10 6 5.7924 1.7591 -3.1340 11 6 5.1236 2.5150 -4.0435 12 6 5.9458 2.6383 -5.1896 13 6 5.7895 3.2890 -6.4204 14 6 6.7843 3.2271 -7.3521 15 6 7.9543 2.5241 -7.0922 16 6 8.1317 1.8764 -5.8904 17 6 7.1308 1.9250 -4.9236 18 7 7.0188 1.3993 -3.6582 19 6 8.0318 0.5876 -2.9791 20 6 3.9626 2.6255 0.8789 21 6 2.8744 2.5050 1.9749 22 7 1.6522 2.1100 1.2512 23 6 0.3684 2.3240 1.6768 24 1 0.1117 2.1741 2.7151 25 6 -0.6030 2.7335 0.7737 26 7 -1.8742 2.6965 1.1127 27 14 -0.1060 3.3372 -0.9228 28 1 -0.0508 2.1872 -1.8608 29 1 1.2309 3.9793 -0.8477 30 1 -1.1029 4.3248 -1.4085 31 1 -0.3633 -1.0155 -0.1568 32 1 -0.3633 0.3720 0.9580 33 1 -0.3633 0.6437 -0.8012 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 3.4440 2.1450 -2.0719 37 1 4.1414 2.9454 -3.9149 38 1 4.8836 3.8380 -6.6315 39 1 6.6617 3.7298 -8.3000 40 1 8.7322 2.4853 -7.8403 41 1 9.0448 1.3329 -5.6976 42 1 7.8621 -0.4658 -3.2013 43 1 9.0232 0.8774 -3.3277 44 1 7.9640 0.7476 -1.9030 45 1 3.8941 3.5838 0.3641 46 1 4.9579 2.4798 1.2989 47 1 2.7280 3.4643 2.4712 48 1 3.1499 1.7396 2.7003 49 1 -2.5530 2.9823 0.4816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087705782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:10 Heat of formation + Delta-G solvation = 58.472528 kcal Electronic energy + Delta-G solvation = -30167.629997 eV Core-core repulsion = 26289.086306 eV Total energy + Delta-G solvation = -3878.543691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.84124 -39.72801 -38.11138 -36.97455 -34.52161 -33.30283 -32.53258 -31.95599 -30.53828 -29.99486 -28.90808 -27.03586 -26.52617 -24.77253 -23.77602 -21.92552 -21.64993 -21.37224 -20.64192 -20.33851 -19.55490 -17.72968 -17.02151 -16.92116 -16.46352 -16.02594 -15.82357 -15.28413 -14.79912 -14.63010 -14.44028 -14.23757 -14.07419 -13.54511 -13.41248 -13.26625 -13.16843 -13.12031 -12.98595 -12.57801 -12.41067 -12.05238 -11.92180 -11.90889 -11.46429 -11.37076 -11.24855 -11.15688 -10.98402 -10.65038 -10.46278 -10.20905 -10.07702 -10.01417 -9.93251 -9.72806 -9.46279 -8.93924 -8.42136 -8.40247 -7.91575 -6.79863 -6.06347 -3.53650 0.56412 1.40024 1.92838 2.31869 3.21342 3.22870 3.27054 3.36965 3.40116 3.67873 4.38465 4.43400 4.45850 4.57630 4.76706 4.89365 4.98307 5.05081 5.07637 5.15397 5.18654 5.23367 5.31507 5.34949 5.43625 5.51021 5.56257 5.62395 5.77867 5.81847 5.91073 5.99005 6.13787 6.19340 6.19477 6.32193 6.35787 6.38675 6.45850 6.47474 6.60700 6.66795 6.74181 6.78793 6.84025 6.85756 6.99662 7.12166 7.47611 7.64181 7.94082 8.10815 8.28466 8.79197 9.58333 10.19172 11.08295 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.003097 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.039260 B = 9038.425933 C =10016.050629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.118 4.118 3 C 0.143 3.857 4 H 0.037 0.963 5 C 0.136 3.864 6 H 0.101 0.899 7 N -0.701 5.701 8 C 0.583 3.417 9 O -0.542 6.542 10 C 0.029 3.971 11 C -0.145 4.145 12 C -0.115 4.115 13 C -0.062 4.062 14 C -0.151 4.151 15 C -0.093 4.093 16 C -0.129 4.129 17 C 0.106 3.894 18 N -0.450 5.450 19 C 0.073 3.927 20 C -0.145 4.145 21 C 0.131 3.869 22 N -0.599 5.599 23 C -0.247 4.247 24 H 0.083 0.917 25 C 0.048 3.952 26 N -0.900 5.900 27 Si 0.881 3.119 28 H -0.277 1.277 29 H -0.271 1.271 30 H -0.303 1.303 31 H 0.025 0.975 32 H 0.104 0.896 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.402 0.598 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.054 0.946 48 H 0.030 0.970 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.680 -1.242 -14.184 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C 0.037 3.963 4 H 0.054 0.946 5 C 0.031 3.969 6 H 0.119 0.881 7 N -0.351 5.351 8 C 0.370 3.630 9 O -0.421 6.421 10 C -0.081 4.081 11 C -0.172 4.172 12 C -0.119 4.119 13 C -0.080 4.080 14 C -0.170 4.170 15 C -0.112 4.112 16 C -0.150 4.150 17 C -0.004 4.004 18 N -0.131 5.131 19 C -0.068 4.068 20 C -0.185 4.185 21 C 0.006 3.994 22 N -0.326 5.326 23 C -0.375 4.375 24 H 0.100 0.900 25 C -0.154 4.154 26 N -0.541 5.541 27 Si 0.713 3.287 28 H -0.205 1.205 29 H -0.197 1.197 30 H -0.231 1.231 31 H 0.044 0.956 32 H 0.123 0.877 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.237 0.763 37 H 0.169 0.831 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.125 0.875 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.048 0.952 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.142 -1.837 -13.360 23.415 hybrid contribution -0.112 0.507 -1.467 1.557 sum 19.030 -1.330 -14.827 24.161 Atomic orbital electron populations 1.22119 0.94623 0.98787 1.05919 1.21820 0.97829 0.96395 0.99706 1.21428 0.89558 0.93277 0.92069 0.94573 1.22177 0.95423 0.99470 0.79792 0.88144 1.45780 1.12961 1.61791 1.14554 1.17071 0.82245 0.79134 0.84581 1.90755 1.56507 1.40932 1.53873 1.19899 0.87911 1.04528 0.95804 1.21000 1.00532 1.02896 0.92759 1.18155 0.94825 1.03091 0.95872 1.20425 0.98937 0.97315 0.91353 1.20621 0.94369 1.02205 0.99837 1.20848 0.97688 0.96863 0.95831 1.20034 0.97797 1.04044 0.93080 1.18383 0.97205 0.98868 0.85912 1.43839 1.14124 1.43182 1.11909 1.22195 0.89583 0.94716 1.00307 1.23198 0.99281 0.98042 0.97971 1.21768 0.85968 0.98254 0.93457 1.44536 1.01971 1.65278 1.20812 1.18378 0.81848 1.40945 0.96298 0.89984 1.25490 0.95184 0.96545 0.98179 1.69755 0.99393 1.48792 1.36183 0.87037 0.77754 0.78413 0.85540 1.20454 1.19683 1.23106 0.95605 0.87724 0.93662 0.94230 0.92348 0.76284 0.83064 0.85730 0.85944 0.85682 0.86224 0.91087 0.90392 0.87531 0.91258 0.91241 0.92764 0.95215 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.27 37.16 0.31 -3.13 16 2 C -0.12 -2.32 5.48 -26.73 -0.15 -2.47 16 3 C 0.14 2.88 2.17 -66.95 -0.15 2.74 16 4 H 0.04 0.79 3.16 -51.93 -0.16 0.62 16 5 C 0.14 2.34 2.80 -66.09 -0.19 2.15 16 6 H 0.10 1.77 7.34 -51.93 -0.38 1.38 16 7 N -0.70 -10.75 5.17 -53.21 -0.28 -11.03 16 8 C 0.58 8.92 7.78 -12.68 -0.10 8.82 16 9 O -0.54 -9.27 14.24 5.23 0.07 -9.20 16 10 C 0.03 0.40 6.81 -82.29 -0.56 -0.16 16 11 C -0.15 -1.83 10.28 -39.16 -0.40 -2.23 16 12 C -0.11 -1.41 6.16 -106.93 -0.66 -2.07 16 13 C -0.06 -0.63 10.06 -39.53 -0.40 -1.03 16 14 C -0.15 -1.33 9.97 -39.97 -0.40 -1.73 16 15 C -0.09 -0.79 10.01 -39.53 -0.40 -1.18 16 16 C -0.13 -1.25 9.98 -39.42 -0.39 -1.65 16 17 C 0.11 1.28 6.81 -83.97 -0.57 0.71 16 18 N -0.45 -5.70 3.22 -117.70 -0.38 -6.08 16 19 C 0.07 0.74 10.56 59.85 0.63 1.37 16 20 C -0.15 -2.46 6.77 -24.58 -0.17 -2.63 16 21 C 0.13 2.51 7.23 -2.52 -0.02 2.49 16 22 N -0.60 -13.50 2.60 -162.57 -0.42 -13.93 16 23 C -0.25 -6.48 8.22 -15.06 -0.12 -6.60 16 24 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 25 C 0.05 1.28 3.66 -17.44 -0.06 1.22 16 26 N -0.90 -25.87 13.97 55.49 0.78 -25.10 16 27 Si 0.88 21.22 23.04 -169.99 -3.92 17.30 16 28 H -0.28 -6.40 5.94 56.52 0.34 -6.06 16 29 H -0.27 -6.35 7.05 56.52 0.40 -5.95 16 30 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 31 H 0.02 0.49 8.14 -51.94 -0.42 0.07 16 32 H 0.10 2.61 5.29 -51.93 -0.27 2.33 16 33 H 0.04 1.04 4.95 -51.93 -0.26 0.78 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.40 5.68 7.14 -40.82 -0.29 5.39 16 37 H 0.15 1.62 7.36 -52.48 -0.39 1.24 16 38 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 44 H 0.11 1.24 6.17 -51.93 -0.32 0.92 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 378.61 15.07 5.71 5.71 Total: -1.00 -30.43 378.61 -9.42 -39.85 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.20 Total: 7.83 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -3.79 Total: -5.37 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.30 Total: -56.13 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -3.92 Total: 17.30 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.43 -9.42 -39.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087705782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.327 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds