Wall clock time and date at job start Wed Apr 1 2020 01:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.47188 * 2 1 4 4 H 1.08994 * 110.00006 * 303.72077 * 3 2 1 5 5 C 1.54334 * 109.98879 * 182.68764 * 3 2 1 6 6 H 1.09006 * 110.51786 * 336.97698 * 5 3 2 7 7 N 1.46497 * 110.85253 * 100.19598 * 5 3 2 8 8 C 1.34778 * 120.00585 * 200.14696 * 7 5 3 9 9 O 1.21649 * 119.99171 * 5.14357 * 8 7 5 10 10 C 1.47056 * 120.00150 * 185.14644 * 8 7 5 11 11 C 1.35861 * 125.43289 * 4.73726 * 10 8 7 12 12 C 1.41591 * 107.72683 * 179.97438 * 11 10 8 13 13 C 1.40102 * 133.37686 * 180.02562 * 12 11 10 14 14 C 1.36437 * 119.83064 * 179.97438 * 13 12 11 15 15 C 1.38945 * 120.61400 * 359.97438 * 14 13 12 16 16 C 1.37672 * 120.64993 * 0.02562 * 15 14 13 17 17 C 1.39236 * 119.80650 * 359.97438 * 16 15 14 18 18 N 1.37481 * 133.17598 * 180.34870 * 17 16 15 19 19 C 1.46498 * 125.60635 * 359.93334 * 18 17 16 20 20 C 1.55153 * 103.02137 * 218.66581 * 5 3 2 21 21 C 1.54916 * 101.58254 * 35.30621 * 20 5 3 22 22 N 1.47019 * 109.88286 * 64.81978 * 3 2 1 23 23 C 1.36937 * 125.65025 * 298.39567 * 22 3 2 24 24 H 1.07999 * 119.99884 * 138.42765 * 23 22 3 25 25 C 1.38810 * 119.99885 * 318.42729 * 23 22 3 26 26 N 1.31610 * 120.00373 * 167.13680 * 25 23 22 27 27 Si 1.86803 * 119.99935 * 347.13941 * 25 23 22 28 28 H 1.48502 * 109.47101 * 89.28350 * 27 25 23 29 29 H 1.48504 * 109.47039 * 329.28465 * 27 25 23 30 30 H 1.48498 * 109.47125 * 209.28603 * 27 25 23 31 31 H 1.08989 * 109.47159 * 171.22347 * 1 2 3 32 32 H 1.09000 * 109.46949 * 291.22327 * 1 2 3 33 33 H 1.09002 * 109.46772 * 51.21984 * 1 2 3 34 34 H 1.08995 * 109.46723 * 239.99781 * 2 1 3 35 35 H 1.09003 * 109.46708 * 120.00358 * 2 1 3 36 36 H 0.97002 * 119.99394 * 20.14836 * 7 5 3 37 37 H 1.08007 * 126.13635 * 0.02562 * 11 10 8 38 38 H 1.08004 * 120.08979 * 359.95114 * 13 12 11 39 39 H 1.07993 * 119.69814 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.67954 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.09840 * 180.02562 * 16 15 14 42 42 H 1.08992 * 109.47185 * 269.95352 * 19 18 17 43 43 H 1.09001 * 109.47271 * 29.96085 * 19 18 17 44 44 H 1.09003 * 109.46788 * 149.95391 * 19 18 17 45 45 H 1.08996 * 111.00544 * 277.23686 * 20 5 3 46 46 H 1.09002 * 111.00725 * 153.37813 * 20 5 3 47 47 H 1.08998 * 110.36579 * 204.15468 * 21 20 5 48 48 H 1.09000 * 110.36125 * 81.82883 * 21 20 5 49 49 H 0.96993 * 120.00897 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6283 1.9835 -0.8519 5 6 3.5819 1.4569 -0.0680 6 1 3.9894 0.5148 0.2989 7 7 4.0412 1.7252 -1.4330 8 6 5.2932 1.3887 -1.8012 9 8 6.0104 0.7786 -1.0309 10 6 5.7924 1.7591 -3.1340 11 6 5.1236 2.5150 -4.0435 12 6 5.9458 2.6383 -5.1896 13 6 5.7895 3.2890 -6.4204 14 6 6.7843 3.2271 -7.3521 15 6 7.9543 2.5241 -7.0922 16 6 8.1317 1.8764 -5.8904 17 6 7.1308 1.9250 -4.9236 18 7 7.0188 1.3993 -3.6582 19 6 8.0318 0.5876 -2.9791 20 6 3.9626 2.6255 0.8789 21 6 2.8744 2.5050 1.9749 22 7 1.6522 2.1100 1.2512 23 6 0.3684 2.3240 1.6768 24 1 0.1117 2.1741 2.7151 25 6 -0.6030 2.7335 0.7737 26 7 -1.8742 2.6965 1.1127 27 14 -0.1060 3.3372 -0.9228 28 1 -0.0508 2.1872 -1.8608 29 1 1.2309 3.9793 -0.8477 30 1 -1.1029 4.3248 -1.4085 31 1 -0.3633 -1.0155 -0.1568 32 1 -0.3633 0.3720 0.9580 33 1 -0.3633 0.6437 -0.8012 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 3.4440 2.1450 -2.0719 37 1 4.1414 2.9454 -3.9149 38 1 4.8836 3.8380 -6.6315 39 1 6.6617 3.7298 -8.3000 40 1 8.7322 2.4853 -7.8403 41 1 9.0448 1.3329 -5.6976 42 1 7.8621 -0.4658 -3.2013 43 1 9.0232 0.8774 -3.3277 44 1 7.9640 0.7476 -1.9030 45 1 3.8941 3.5838 0.3641 46 1 4.9579 2.4798 1.2989 47 1 2.7280 3.4643 2.4712 48 1 3.1499 1.7396 2.7003 49 1 -2.5530 2.9823 0.4816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087705782.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:08 Heat of formation + Delta-G solvation = 40.702302 kcal Electronic energy + Delta-G solvation = -30168.400572 eV Core-core repulsion = 26289.086306 eV Total energy + Delta-G solvation = -3879.314266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.70033 -40.99668 -39.51159 -37.78878 -35.89302 -34.54393 -33.91902 -33.71216 -31.43881 -31.25405 -30.07715 -28.52304 -27.36066 -26.37574 -24.95452 -23.39293 -22.69077 -22.30792 -22.07542 -21.61200 -20.90808 -18.85517 -18.55173 -17.95355 -17.69786 -17.25777 -16.83080 -16.61049 -16.15892 -15.82098 -15.60325 -15.20586 -15.11059 -14.97689 -14.88002 -14.59801 -14.45910 -14.10243 -14.00110 -13.87716 -13.71665 -13.57417 -13.30164 -13.14287 -13.00183 -12.59506 -12.59303 -12.31778 -12.24661 -12.12063 -11.91512 -11.83225 -11.73678 -11.58932 -11.24103 -11.15753 -10.79595 -10.42516 -10.22391 -9.22452 -8.71030 -8.67387 -8.15231 -5.59968 -0.28071 0.66120 1.03357 1.28918 1.38473 1.40389 1.48488 2.16354 2.19408 2.43011 2.94210 3.12206 3.29171 3.49827 3.61728 3.66765 3.77607 3.83485 4.05923 4.10697 4.26123 4.30247 4.33736 4.35758 4.41078 4.45180 4.47044 4.57924 4.58635 4.66887 4.70550 4.79799 4.83195 4.87110 4.98364 5.01280 5.07535 5.10234 5.15360 5.24237 5.32517 5.46461 5.50506 5.61250 5.68020 5.70761 5.77900 5.99253 6.04904 6.21405 6.22929 6.32384 6.84946 6.95103 7.55118 8.22580 9.03184 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.003097 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.039260 B = 9038.425933 C =10016.050629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.140 3.860 4 H 0.029 0.971 5 C 0.149 3.851 6 H 0.101 0.899 7 N -0.699 5.699 8 C 0.589 3.411 9 O -0.564 6.564 10 C 0.001 3.999 11 C -0.141 4.141 12 C -0.142 4.142 13 C -0.074 4.074 14 C -0.151 4.151 15 C -0.085 4.085 16 C -0.141 4.141 17 C 0.092 3.908 18 N -0.457 5.457 19 C 0.072 3.928 20 C -0.132 4.132 21 C 0.126 3.874 22 N -0.614 5.614 23 C -0.233 4.233 24 H 0.044 0.956 25 C 0.005 3.995 26 N -0.945 5.945 27 Si 0.930 3.070 28 H -0.261 1.261 29 H -0.259 1.259 30 H -0.315 1.315 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.408 0.592 37 H 0.164 0.836 38 H 0.138 0.862 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.140 0.860 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.050 0.950 48 H 0.039 0.961 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.623 -1.203 -17.271 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.034 3.966 4 H 0.046 0.954 5 C 0.044 3.956 6 H 0.119 0.881 7 N -0.349 5.349 8 C 0.377 3.623 9 O -0.444 6.444 10 C -0.109 4.109 11 C -0.168 4.168 12 C -0.147 4.147 13 C -0.092 4.092 14 C -0.170 4.170 15 C -0.105 4.105 16 C -0.161 4.161 17 C -0.018 4.018 18 N -0.138 5.138 19 C -0.068 4.068 20 C -0.172 4.172 21 C 0.002 3.998 22 N -0.341 5.341 23 C -0.362 4.362 24 H 0.061 0.939 25 C -0.192 4.192 26 N -0.588 5.588 27 Si 0.760 3.240 28 H -0.187 1.187 29 H -0.183 1.183 30 H -0.244 1.244 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.245 0.755 37 H 0.181 0.819 38 H 0.156 0.844 39 H 0.167 0.833 40 H 0.174 0.826 41 H 0.158 0.842 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.069 0.931 48 H 0.057 0.943 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 22.129 -1.806 -16.457 27.637 hybrid contribution -0.954 0.469 -0.539 1.192 sum 21.175 -1.337 -16.996 27.185 Atomic orbital electron populations 1.21968 0.96272 0.99418 1.03156 1.21795 0.96150 0.96467 1.01015 1.21475 0.91701 0.93083 0.90349 0.95357 1.21887 0.93060 0.99650 0.81005 0.88086 1.45630 1.13323 1.62087 1.13855 1.17210 0.81747 0.78381 0.84994 1.90742 1.57002 1.41988 1.54697 1.19715 0.89174 1.06532 0.95496 1.21246 1.00910 1.01957 0.92678 1.18445 0.95202 1.04325 0.96686 1.20705 1.00128 0.97418 0.90981 1.21024 0.93896 1.01582 1.00459 1.21305 0.98178 0.95151 0.95824 1.20381 0.98106 1.04584 0.93018 1.18778 0.97972 0.98953 0.86066 1.43986 1.14043 1.43480 1.12293 1.22263 0.90454 0.94861 0.99252 1.23099 0.99200 0.97961 0.96915 1.21870 0.85425 0.98300 0.94218 1.44599 1.01598 1.66051 1.21845 1.18105 0.83631 1.39691 0.94731 0.93872 1.25926 0.94839 0.97109 1.01375 1.69880 1.00496 1.50942 1.37506 0.86238 0.77488 0.78134 0.82147 1.18735 1.18327 1.24360 0.93593 0.91413 0.95066 0.91716 0.92111 0.75503 0.81874 0.84386 0.83321 0.82563 0.84241 0.90639 0.87833 0.89239 0.91226 0.89317 0.93137 0.94336 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.53 8.27 71.99 0.60 -5.94 16 2 C -0.12 -4.36 5.48 30.60 0.17 -4.19 16 3 C 0.14 5.45 2.17 45.34 0.10 5.54 16 4 H 0.03 1.19 3.16 -2.39 -0.01 1.18 16 5 C 0.15 4.85 2.80 46.18 0.13 4.98 16 6 H 0.10 3.34 7.34 -2.38 -0.02 3.32 16 7 N -0.70 -20.10 5.17 -440.50 -2.28 -22.38 16 8 C 0.59 17.21 7.78 86.56 0.67 17.88 16 9 O -0.56 -18.67 14.24 -4.19 -0.06 -18.73 16 10 C 0.00 0.02 6.81 39.91 0.27 0.29 16 11 C -0.14 -3.35 10.28 22.55 0.23 -3.12 16 12 C -0.14 -3.25 6.16 -21.36 -0.13 -3.38 16 13 C -0.07 -1.32 10.06 22.30 0.22 -1.10 16 14 C -0.15 -2.11 9.97 22.02 0.22 -1.89 16 15 C -0.09 -1.12 10.01 22.31 0.22 -0.89 16 16 C -0.14 -2.31 9.98 22.38 0.22 -2.09 16 17 C 0.09 2.05 6.81 39.14 0.27 2.31 16 18 N -0.46 -10.96 3.22 -526.30 -1.70 -12.65 16 19 C 0.07 1.37 10.56 127.77 1.35 2.72 16 20 C -0.13 -4.22 6.77 31.99 0.22 -4.01 16 21 C 0.13 4.75 7.23 86.86 0.63 5.38 16 22 N -0.61 -27.56 2.60 -668.24 -1.73 -29.29 16 23 C -0.23 -12.55 8.22 84.03 0.69 -11.86 16 24 H 0.04 2.63 8.06 -2.91 -0.02 2.60 16 25 C 0.01 0.28 3.66 84.86 0.31 0.60 16 26 N -0.94 -56.29 13.97 21.65 0.30 -55.99 16 27 Si 0.93 43.82 23.04 68.60 1.58 45.40 16 28 H -0.26 -11.50 5.94 99.48 0.59 -10.91 16 29 H -0.26 -11.50 7.05 99.48 0.70 -10.80 16 30 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 3.45 5.29 -2.39 -0.01 3.44 16 33 H 0.03 1.40 4.95 -2.39 -0.01 1.39 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.41 10.70 7.14 -92.71 -0.66 10.04 16 37 H 0.16 3.23 7.36 -2.91 -0.02 3.21 16 38 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 39 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 43 H 0.10 1.35 8.12 -2.39 -0.02 1.33 16 44 H 0.09 2.02 6.17 -2.39 -0.01 2.01 16 45 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -67.48 378.61 2.69 -64.79 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.19 Total: 27.61 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 6.39 Total: 1.24 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -5.41 Total: -120.31 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.06 Total: -18.73 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.58 Total: 45.40 kcal Total: -67.48 2.69 -64.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087705782.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.496 kcal (2) G-P(sol) polarization free energy of solvation -67.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds