Wall clock time and date at job start Wed Apr 1 2020 00:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47063 * 2 1 4 4 C 1.37804 * 120.03200 * 264.97946 * 3 2 1 5 5 C 1.38717 * 120.62725 * 180.02562 * 4 3 2 6 6 C 1.37784 * 120.30644 * 359.97438 * 5 4 3 7 7 C 1.39244 * 119.66935 * 359.69445 * 6 5 4 8 8 C 1.47445 * 134.00821 * 179.56782 * 7 6 5 9 9 C 1.46903 * 126.76973 * 0.79432 * 8 7 6 10 10 O 1.21669 * 120.00154 * 359.71972 * 9 8 7 11 11 N 1.34779 * 119.99985 * 179.71596 * 9 8 7 12 12 C 1.46498 * 119.99910 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.78011 * 323.21238 * 12 11 9 14 14 C 1.55158 * 110.72351 * 86.45393 * 12 11 9 15 15 C 1.54909 * 101.61642 * 153.88368 * 14 12 11 16 16 N 1.47427 * 104.83281 * 322.96922 * 15 14 12 17 17 C 1.36930 * 125.64624 * 204.16403 * 16 15 14 18 18 H 1.08002 * 119.99784 * 179.97438 * 17 16 15 19 19 C 1.38820 * 120.00266 * 359.97438 * 17 16 15 20 20 N 1.31614 * 119.99878 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47699 * 89.99771 * 21 19 17 23 23 H 1.48506 * 109.46953 * 209.99990 * 21 19 17 24 24 H 1.48506 * 109.47233 * 329.99514 * 21 19 17 25 25 C 1.47014 * 108.70101 * 24.13279 * 16 15 14 26 26 H 1.09004 * 109.88272 * 239.36515 * 25 16 15 27 27 C 1.53006 * 109.88374 * 118.35608 * 25 16 15 28 28 C 1.36371 * 106.46048 * 180.53968 * 8 7 6 29 29 N 1.35474 * 109.78099 * 0.26052 * 28 8 7 30 30 H 0.97003 * 124.78542 * 179.97438 * 29 28 8 31 31 C 1.37963 * 110.42662 * 359.97438 * 29 28 8 32 32 H 1.09003 * 109.46802 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47268 * 300.00102 * 1 2 3 34 34 H 1.09002 * 109.46976 * 60.00267 * 1 2 3 35 35 H 1.09002 * 109.46965 * 240.00288 * 2 1 3 36 36 H 1.08993 * 109.47097 * 120.00349 * 2 1 3 37 37 H 1.07993 * 119.68878 * 0.02562 * 4 3 2 38 38 H 1.08002 * 119.84326 * 179.97438 * 5 4 3 39 39 H 1.08004 * 120.17050 * 179.97438 * 6 5 4 40 40 H 0.97002 * 120.00249 * 0.02562 * 11 9 8 41 41 H 1.09002 * 111.00366 * 35.78886 * 14 12 11 42 42 H 1.09002 * 111.00429 * 271.97948 * 14 12 11 43 43 H 1.09001 * 110.36668 * 81.81066 * 15 14 12 44 44 H 1.09004 * 110.36307 * 204.13193 * 15 14 12 45 45 H 0.96997 * 119.99856 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.46974 * 61.44956 * 27 25 16 47 47 H 1.08997 * 109.47249 * 181.45250 * 27 25 16 48 48 H 1.08997 * 109.47061 * 301.45080 * 27 25 16 49 49 H 1.08002 * 125.11346 * 180.27972 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0363 -1.1885 5 6 2.8247 3.3435 -1.2028 6 6 2.9631 4.0451 -0.0250 7 6 2.6284 3.4378 1.1824 8 6 2.6574 3.8733 2.5908 9 6 3.0750 5.1878 3.0964 10 8 3.4507 6.0466 2.3207 11 7 3.0419 5.4426 4.4194 12 6 3.4578 6.7538 4.9235 13 1 4.2979 7.1411 4.3469 14 6 2.2703 7.7522 4.9019 15 6 2.6727 8.7397 6.0256 16 7 3.3036 7.8987 7.0591 17 6 3.3972 8.2059 8.3902 18 1 3.8805 7.5197 9.0700 19 6 2.8711 9.3991 8.8659 20 7 2.2826 10.2355 8.0374 21 14 2.9995 9.8184 10.6817 22 1 4.2600 10.5632 10.9299 23 1 1.8414 10.6590 11.0787 24 1 2.9990 8.5662 11.4801 25 6 3.8148 6.6754 6.4239 26 1 3.3455 5.8003 6.8736 27 6 5.3333 6.5963 6.5940 28 6 2.2147 2.8170 3.3311 29 7 1.9228 1.7756 2.5152 30 1 1.5908 0.9146 2.8141 31 6 2.1644 2.1124 1.1993 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 2.2557 1.4958 -2.1175 38 1 3.0788 3.8133 -2.1414 39 1 3.3250 5.0626 -0.0387 40 1 2.7426 4.7579 5.0379 41 1 1.3330 7.2497 5.1405 42 1 2.2048 8.2606 3.9399 43 1 3.3838 9.4745 5.6482 44 1 1.7898 9.2367 6.4278 45 1 1.9146 11.0691 8.3699 46 1 5.5783 6.5542 7.6552 47 1 5.7082 5.7006 6.0987 48 1 5.7951 7.4777 6.1491 49 1 2.1118 2.8115 4.4062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089061171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:19 Heat of formation + Delta-G solvation = 37.511100 kcal Electronic energy + Delta-G solvation = -29184.736419 eV Core-core repulsion = 25305.283773 eV Total energy + Delta-G solvation = -3879.452647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.67606 -39.28222 -37.54249 -37.25046 -34.55264 -33.90977 -32.10009 -31.01497 -30.31922 -29.46683 -29.04812 -28.24774 -24.94713 -24.25617 -23.97035 -22.77105 -22.00413 -21.72041 -20.19471 -19.97852 -18.98823 -18.10035 -16.83856 -16.52470 -16.17487 -15.74176 -15.43733 -15.12854 -14.95388 -14.67233 -14.32815 -14.05351 -13.88893 -13.84944 -13.57481 -13.21696 -13.02933 -12.83101 -12.72109 -12.27082 -12.10240 -11.93882 -11.83159 -11.67233 -11.52832 -11.35212 -11.10987 -10.96465 -10.85570 -10.81264 -10.46606 -10.35813 -10.08148 -9.74023 -9.69889 -9.62366 -9.49158 -8.65714 -8.53978 -8.47465 -7.84264 -6.85788 -5.64055 -3.06928 0.82390 1.41042 1.93917 2.75541 3.39729 3.43412 3.46527 3.47653 3.50528 3.87069 4.37405 4.45378 4.49269 4.58005 4.72874 4.87501 4.94750 4.98053 5.15511 5.24428 5.31696 5.36503 5.44175 5.47631 5.53133 5.53721 5.59181 5.68536 5.73013 5.78457 5.88463 5.96432 6.15952 6.28726 6.30128 6.34674 6.36273 6.41140 6.48737 6.54800 6.61247 6.66558 6.79018 6.91101 6.93634 7.12423 7.18985 7.55816 7.64093 7.86966 7.88569 8.36810 8.59368 9.21960 9.82962 10.47320 11.39107 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.024866 B = 0.002163 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.751165 B =12941.669404 C =13342.732807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.094 4.094 4 C -0.101 4.101 5 C -0.141 4.141 6 C -0.064 4.064 7 C -0.060 4.060 8 C -0.218 4.218 9 C 0.587 3.413 10 O -0.543 6.543 11 N -0.715 5.715 12 C 0.138 3.862 13 H 0.092 0.908 14 C -0.152 4.152 15 C 0.152 3.848 16 N -0.595 5.595 17 C -0.220 4.220 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.156 3.844 26 H 0.035 0.965 27 C -0.156 4.156 28 C 0.104 3.896 29 N -0.579 5.579 30 H 0.418 0.582 31 C 0.090 3.910 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.393 0.607 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.014 0.986 44 H 0.108 0.892 45 H 0.252 0.748 46 H 0.053 0.947 47 H 0.038 0.962 48 H 0.052 0.948 49 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.417 -22.213 -15.572 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.096 4.096 4 C -0.120 4.120 5 C -0.160 4.160 6 C -0.083 4.083 7 C -0.065 4.065 8 C -0.229 4.229 9 C 0.374 3.626 10 O -0.422 6.422 11 N -0.365 5.365 12 C 0.034 3.966 13 H 0.110 0.890 14 C -0.192 4.192 15 C 0.027 3.973 16 N -0.320 5.320 17 C -0.348 4.348 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.048 3.952 26 H 0.052 0.948 27 C -0.215 4.215 28 C -0.028 4.028 29 N -0.180 5.180 30 H 0.255 0.745 31 C -0.015 4.015 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.227 0.773 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.032 0.968 44 H 0.126 0.874 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.251 -21.498 -15.915 26.843 hybrid contribution -0.152 -0.459 1.513 1.589 sum -2.403 -21.957 -14.402 26.368 Atomic orbital electron populations 1.21772 0.94764 1.01593 1.02408 1.20452 0.96092 0.92672 1.02666 1.18802 1.04526 0.96107 0.90206 1.20700 0.99820 0.95174 0.96283 1.20956 1.02423 0.94693 0.97914 1.20739 0.97107 1.00315 0.90131 1.18746 1.02687 0.92529 0.92491 1.20168 1.14953 0.95324 0.92490 1.17166 0.77542 0.85778 0.82090 1.90759 1.47945 1.47242 1.56205 1.45890 1.67551 1.16318 1.06739 1.22122 0.97999 0.81752 0.94730 0.89037 1.23390 0.97051 0.98359 1.00401 1.21956 0.99277 0.90574 0.85454 1.44491 1.66104 1.17170 1.04276 1.19012 1.31380 1.02163 0.82238 0.90502 1.24793 1.00979 0.96858 0.98031 1.69800 1.43413 1.11225 1.32413 0.86090 0.77164 0.77931 0.84386 1.21663 1.21700 1.20766 1.21001 0.92873 0.91593 0.89778 0.94792 1.22247 0.97958 0.99924 1.01388 1.22125 0.97694 0.86625 0.96396 1.41472 1.57093 1.14611 1.04826 0.74522 1.18012 1.04054 0.94870 0.84532 0.92404 0.92928 0.92175 0.90638 0.91885 0.85834 0.85788 0.84795 0.77328 0.92094 0.91935 0.96769 0.87388 0.93707 0.92768 0.94315 0.92921 0.80368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.90 37.16 0.37 -0.48 16 2 C -0.08 -0.51 6.07 -27.88 -0.17 -0.67 16 3 C -0.09 -0.86 5.15 -104.47 -0.54 -1.39 16 4 C -0.10 -0.92 9.64 -39.56 -0.38 -1.30 16 5 C -0.14 -1.47 10.03 -39.57 -0.40 -1.86 16 6 C -0.06 -0.85 9.85 -39.37 -0.39 -1.23 16 7 C -0.06 -0.81 6.27 -104.95 -0.66 -1.46 16 8 C -0.22 -2.90 6.27 -103.31 -0.65 -3.55 16 9 C 0.59 9.51 7.79 -12.75 -0.10 9.41 16 10 O -0.54 -10.81 15.89 5.22 0.08 -10.73 16 11 N -0.72 -10.76 5.19 -53.21 -0.28 -11.03 16 12 C 0.14 2.56 2.76 -66.04 -0.18 2.38 16 13 H 0.09 1.83 7.41 -51.93 -0.38 1.45 16 14 C -0.15 -3.09 6.76 -24.58 -0.17 -3.26 16 15 C 0.15 3.75 5.89 -2.53 -0.01 3.73 16 16 N -0.60 -14.80 3.13 -162.50 -0.51 -15.31 16 17 C -0.22 -5.94 9.87 -15.06 -0.15 -6.09 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -26.67 10.09 55.49 0.56 -26.11 16 21 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.16 3.11 3.48 -66.90 -0.23 2.88 16 26 H 0.03 0.65 7.70 -51.93 -0.40 0.25 16 27 C -0.16 -2.89 9.14 37.16 0.34 -2.55 16 28 C 0.10 0.94 11.33 -16.62 -0.19 0.76 16 29 N -0.58 -4.62 5.99 -10.49 -0.06 -4.68 16 30 H 0.42 1.95 8.96 -40.82 -0.37 1.58 16 31 C 0.09 0.96 6.94 -83.97 -0.58 0.38 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.40 8.05 -51.93 -0.42 -0.02 16 36 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 1.91 7.45 -52.48 -0.39 1.52 16 40 H 0.39 4.70 7.20 -40.82 -0.29 4.41 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.11 2.97 5.87 -51.93 -0.31 2.66 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 46 H 0.05 1.03 8.03 -51.93 -0.42 0.61 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.18 0.99 7.38 -52.49 -0.39 0.60 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -33.73 397.35 -10.98 -44.71 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.56 Total: 5.08 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -4.18 Total: -4.74 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.29 Total: -57.14 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.73 -10.98 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089061171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.226 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds