Wall clock time and date at job start Wed Apr 1 2020 00:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47063 * 2 1 4 4 C 1.37804 * 120.03200 * 264.97946 * 3 2 1 5 5 C 1.38717 * 120.62725 * 180.02562 * 4 3 2 6 6 C 1.37784 * 120.30644 * 359.97438 * 5 4 3 7 7 C 1.39244 * 119.66935 * 359.69445 * 6 5 4 8 8 C 1.47445 * 134.00821 * 179.56782 * 7 6 5 9 9 C 1.46903 * 126.76973 * 0.79432 * 8 7 6 10 10 O 1.21669 * 120.00154 * 359.71972 * 9 8 7 11 11 N 1.34779 * 119.99985 * 179.71596 * 9 8 7 12 12 C 1.46498 * 119.99910 * 180.02562 * 11 9 8 13 13 H 1.09005 * 110.78011 * 323.21238 * 12 11 9 14 14 C 1.55158 * 110.72351 * 86.45393 * 12 11 9 15 15 C 1.54909 * 101.61642 * 153.88368 * 14 12 11 16 16 N 1.47427 * 104.83281 * 322.96922 * 15 14 12 17 17 C 1.36930 * 125.64624 * 204.16403 * 16 15 14 18 18 H 1.08002 * 119.99784 * 179.97438 * 17 16 15 19 19 C 1.38820 * 120.00266 * 359.97438 * 17 16 15 20 20 N 1.31614 * 119.99878 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47699 * 89.99771 * 21 19 17 23 23 H 1.48506 * 109.46953 * 209.99990 * 21 19 17 24 24 H 1.48506 * 109.47233 * 329.99514 * 21 19 17 25 25 C 1.47014 * 108.70101 * 24.13279 * 16 15 14 26 26 H 1.09004 * 109.88272 * 239.36515 * 25 16 15 27 27 C 1.53006 * 109.88374 * 118.35608 * 25 16 15 28 28 C 1.36371 * 106.46048 * 180.53968 * 8 7 6 29 29 N 1.35474 * 109.78099 * 0.26052 * 28 8 7 30 30 H 0.97003 * 124.78542 * 179.97438 * 29 28 8 31 31 C 1.37963 * 110.42662 * 359.97438 * 29 28 8 32 32 H 1.09003 * 109.46802 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47268 * 300.00102 * 1 2 3 34 34 H 1.09002 * 109.46976 * 60.00267 * 1 2 3 35 35 H 1.09002 * 109.46965 * 240.00288 * 2 1 3 36 36 H 1.08993 * 109.47097 * 120.00349 * 2 1 3 37 37 H 1.07993 * 119.68878 * 0.02562 * 4 3 2 38 38 H 1.08002 * 119.84326 * 179.97438 * 5 4 3 39 39 H 1.08004 * 120.17050 * 179.97438 * 6 5 4 40 40 H 0.97002 * 120.00249 * 0.02562 * 11 9 8 41 41 H 1.09002 * 111.00366 * 35.78886 * 14 12 11 42 42 H 1.09002 * 111.00429 * 271.97948 * 14 12 11 43 43 H 1.09001 * 110.36668 * 81.81066 * 15 14 12 44 44 H 1.09004 * 110.36307 * 204.13193 * 15 14 12 45 45 H 0.96997 * 119.99856 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.46974 * 61.44956 * 27 25 16 47 47 H 1.08997 * 109.47249 * 181.45250 * 27 25 16 48 48 H 1.08997 * 109.47061 * 301.45080 * 27 25 16 49 49 H 1.08002 * 125.11346 * 180.27972 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0363 -1.1885 5 6 2.8247 3.3435 -1.2028 6 6 2.9631 4.0451 -0.0250 7 6 2.6284 3.4378 1.1824 8 6 2.6574 3.8733 2.5908 9 6 3.0750 5.1878 3.0964 10 8 3.4507 6.0466 2.3207 11 7 3.0419 5.4426 4.4194 12 6 3.4578 6.7538 4.9235 13 1 4.2979 7.1411 4.3469 14 6 2.2703 7.7522 4.9019 15 6 2.6727 8.7397 6.0256 16 7 3.3036 7.8987 7.0591 17 6 3.3972 8.2059 8.3902 18 1 3.8805 7.5197 9.0700 19 6 2.8711 9.3991 8.8659 20 7 2.2826 10.2355 8.0374 21 14 2.9995 9.8184 10.6817 22 1 4.2600 10.5632 10.9299 23 1 1.8414 10.6590 11.0787 24 1 2.9990 8.5662 11.4801 25 6 3.8148 6.6754 6.4239 26 1 3.3455 5.8003 6.8736 27 6 5.3333 6.5963 6.5940 28 6 2.2147 2.8170 3.3311 29 7 1.9228 1.7756 2.5152 30 1 1.5908 0.9146 2.8141 31 6 2.1644 2.1124 1.1993 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 2.2557 1.4958 -2.1175 38 1 3.0788 3.8133 -2.1414 39 1 3.3250 5.0626 -0.0387 40 1 2.7426 4.7579 5.0379 41 1 1.3330 7.2497 5.1405 42 1 2.2048 8.2606 3.9399 43 1 3.3838 9.4745 5.6482 44 1 1.7898 9.2367 6.4278 45 1 1.9146 11.0691 8.3699 46 1 5.5783 6.5542 7.6552 47 1 5.7082 5.7006 6.0987 48 1 5.7951 7.4777 6.1491 49 1 2.1118 2.8115 4.4062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089061171.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:18 Heat of formation + Delta-G solvation = 16.802299 kcal Electronic energy + Delta-G solvation = -29185.634420 eV Core-core repulsion = 25305.283773 eV Total energy + Delta-G solvation = -3880.350648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.47803 -40.66333 -38.98828 -38.16320 -35.54812 -35.17010 -33.85598 -32.11484 -31.82566 -30.60739 -30.03763 -29.46302 -26.56550 -25.82023 -24.87576 -23.90814 -22.77813 -22.50165 -21.94003 -21.48318 -20.29697 -18.87103 -18.67849 -17.68989 -17.19040 -16.99551 -16.55268 -16.26681 -16.09601 -15.70323 -15.57625 -15.42601 -15.19640 -14.83057 -14.73095 -14.35233 -14.17397 -13.97255 -13.76612 -13.58776 -13.52321 -13.20400 -12.91123 -12.87131 -12.74580 -12.59376 -12.54011 -12.39533 -12.19921 -12.06902 -11.94737 -11.82117 -11.67134 -11.55059 -11.43287 -10.89306 -10.71443 -10.55338 -9.96653 -9.26008 -8.88300 -8.65929 -7.72613 -5.17816 0.01746 0.59187 1.04021 1.49372 1.51305 1.59590 2.04483 2.24374 2.44615 2.54945 2.95614 3.37842 3.59384 3.70801 3.79236 3.88478 3.92679 4.00125 4.04820 4.14721 4.23890 4.34892 4.48131 4.50185 4.51876 4.59403 4.62620 4.64777 4.71003 4.76582 4.84898 4.85647 4.98979 5.05664 5.08242 5.12916 5.16321 5.20081 5.39349 5.40268 5.51948 5.52837 5.55814 5.61515 5.66083 5.67043 5.73822 5.81784 6.14682 6.31988 6.54332 6.72261 7.12689 7.39570 7.80786 8.45073 9.29472 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.024866 B = 0.002163 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.751165 B =12941.669404 C =13342.732807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.085 4.085 4 C -0.109 4.109 5 C -0.135 4.135 6 C -0.106 4.106 7 C -0.089 4.089 8 C -0.272 4.272 9 C 0.587 3.413 10 O -0.593 6.593 11 N -0.701 5.701 12 C 0.156 3.844 13 H 0.073 0.927 14 C -0.138 4.138 15 C 0.158 3.842 16 N -0.613 5.613 17 C -0.224 4.224 18 H 0.088 0.912 19 C -0.072 4.072 20 N -0.952 5.952 21 Si 0.979 3.021 22 H -0.291 1.291 23 H -0.297 1.297 24 H -0.265 1.265 25 C 0.153 3.847 26 H 0.058 0.942 27 C -0.147 4.147 28 C 0.148 3.852 29 N -0.558 5.558 30 H 0.438 0.562 31 C 0.080 3.920 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.153 0.847 38 H 0.139 0.861 39 H 0.104 0.896 40 H 0.412 0.588 41 H 0.070 0.930 42 H 0.058 0.942 43 H -0.018 1.018 44 H 0.078 0.922 45 H 0.245 0.755 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.032 0.968 49 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 -26.964 -15.004 31.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.087 4.087 4 C -0.128 4.128 5 C -0.154 4.154 6 C -0.125 4.125 7 C -0.093 4.093 8 C -0.282 4.282 9 C 0.378 3.622 10 O -0.475 6.475 11 N -0.352 5.352 12 C 0.050 3.950 13 H 0.091 0.909 14 C -0.178 4.178 15 C 0.033 3.967 16 N -0.338 5.338 17 C -0.353 4.353 18 H 0.106 0.894 19 C -0.264 4.264 20 N -0.603 5.603 21 Si 0.808 3.192 22 H -0.219 1.219 23 H -0.224 1.224 24 H -0.189 1.189 25 C 0.046 3.954 26 H 0.076 0.924 27 C -0.207 4.207 28 C 0.013 3.987 29 N -0.160 5.160 30 H 0.279 0.721 31 C -0.025 4.025 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.122 0.878 40 H 0.249 0.751 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.000 1.000 44 H 0.096 0.904 45 H 0.055 0.945 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.051 0.949 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -2.844 -26.358 -15.346 30.632 hybrid contribution 0.023 0.906 1.241 1.537 sum -2.821 -25.452 -14.106 29.235 Atomic orbital electron populations 1.21758 0.94290 1.02505 1.01816 1.20535 0.96299 0.90615 1.04177 1.19233 1.02544 0.97425 0.89504 1.21063 0.99360 0.94606 0.97748 1.21197 1.01286 0.95382 0.97549 1.20692 1.00191 0.99800 0.91823 1.19050 1.03423 0.94172 0.92639 1.19933 1.19650 0.95329 0.93322 1.17615 0.76407 0.86525 0.81687 1.90733 1.50285 1.49113 1.57368 1.45582 1.67470 1.15260 1.06912 1.21665 0.96374 0.83084 0.93865 0.90875 1.23184 0.98223 0.97934 0.98448 1.21656 0.97202 0.91138 0.86740 1.44727 1.66562 1.18617 1.03937 1.19411 1.30279 1.02159 0.83421 0.89424 1.25642 1.01502 0.97183 1.02087 1.70054 1.44767 1.11393 1.34043 0.85060 0.76396 0.77935 0.79826 1.21885 1.22401 1.18927 1.21205 0.93784 0.90304 0.90079 0.92401 1.22137 0.96604 1.00627 1.01301 1.22648 0.93277 0.84976 0.97846 1.41477 1.55563 1.15209 1.03782 0.72052 1.18123 1.04419 0.93966 0.86005 0.90745 0.93509 0.92857 0.89181 0.90423 0.82921 0.84323 0.87790 0.75079 0.91134 0.92291 0.99974 0.90431 0.94523 0.93144 0.91024 0.94884 0.76085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.90 71.98 0.71 -0.45 16 2 C -0.08 -0.67 6.07 29.85 0.18 -0.49 16 3 C -0.08 -1.32 5.15 -19.77 -0.10 -1.42 16 4 C -0.11 -1.77 9.64 22.28 0.21 -1.55 16 5 C -0.14 -2.83 10.03 22.28 0.22 -2.61 16 6 C -0.11 -2.99 9.85 22.40 0.22 -2.77 16 7 C -0.09 -2.39 6.27 -20.08 -0.13 -2.51 16 8 C -0.27 -6.98 6.27 -19.02 -0.12 -7.10 16 9 C 0.59 19.17 7.79 86.51 0.67 19.84 16 10 O -0.59 -24.99 15.89 -4.25 -0.07 -25.06 16 11 N -0.70 -20.18 5.19 -440.48 -2.29 -22.47 16 12 C 0.16 5.77 2.76 46.22 0.13 5.90 16 13 H 0.07 3.02 7.41 -2.38 -0.02 3.00 16 14 C -0.14 -5.76 6.76 31.99 0.22 -5.54 16 15 C 0.16 8.13 5.89 86.85 0.51 8.65 16 16 N -0.61 -30.78 3.13 -668.04 -2.09 -32.87 16 17 C -0.22 -12.11 9.87 84.04 0.83 -11.28 16 18 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 20 N -0.95 -57.23 10.09 21.65 0.22 -57.01 16 21 Si 0.98 45.27 29.55 68.60 2.03 47.30 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 25 C 0.15 5.94 3.48 45.38 0.16 6.10 16 26 H 0.06 2.02 7.70 -2.38 -0.02 2.01 16 27 C -0.15 -5.29 9.14 71.98 0.66 -4.63 16 28 C 0.15 2.16 11.33 83.70 0.95 3.11 16 29 N -0.56 -6.81 5.99 -187.09 -1.12 -7.93 16 30 H 0.44 1.93 8.96 -92.71 -0.83 1.10 16 31 C 0.08 1.53 6.94 38.91 0.27 1.80 16 32 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.09 0.55 8.05 -2.39 -0.02 0.54 16 36 H 0.08 0.46 8.12 -2.39 -0.02 0.44 16 37 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.10 3.40 7.45 -2.91 -0.02 3.38 16 40 H 0.41 8.53 7.20 -92.71 -0.67 7.86 16 41 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 43 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 44 H 0.08 4.49 5.87 -2.38 -0.01 4.47 16 45 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 46 H 0.05 1.83 8.03 -2.39 -0.02 1.81 16 47 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.22 1.19 7.38 -2.91 -0.02 1.16 16 Total: -1.00 -79.06 397.35 2.22 -76.84 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -0.52 Total: 19.75 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 6.06 Total: 1.45 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -5.28 Total: -120.28 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.07 Total: -25.06 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -79.06 2.22 -76.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089061171.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.641 kcal (2) G-P(sol) polarization free energy of solvation -79.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds