Wall clock time and date at job start Wed Apr 1 2020 00:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39637 * 120.49095 * 146.94989 * 3 2 1 5 5 N 1.31750 * 120.88370 * 179.97438 * 4 3 2 6 6 C 1.31735 * 122.04065 * 359.97438 * 5 4 3 7 7 C 1.39602 * 120.87720 * 0.02562 * 6 5 4 8 8 C 1.47862 * 120.48936 * 179.97438 * 7 6 5 9 9 O 1.21546 * 119.99909 * 180.02562 * 8 7 6 10 10 N 1.34772 * 119.99905 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00083 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.21049 * 34.99614 * 11 10 8 13 13 C 1.52523 * 110.24839 * 273.06476 * 11 10 8 14 14 C 1.46240 * 114.27837 * 151.61552 * 13 11 10 15 15 N 1.50174 * 107.52906 * 58.41050 * 14 13 11 16 16 C 1.36938 * 120.53694 * 109.56930 * 15 14 13 17 17 H 1.08005 * 119.99554 * 320.02294 * 16 15 14 18 18 C 1.38807 * 119.99996 * 140.02358 * 16 15 14 19 19 N 1.31625 * 120.00101 * 156.57304 * 18 16 15 20 20 Si 1.86801 * 120.00085 * 336.57131 * 18 16 15 21 21 H 1.48504 * 109.47244 * 95.56729 * 20 18 16 22 22 H 1.48496 * 109.47170 * 215.56435 * 20 18 16 23 23 H 1.48497 * 109.47312 * 335.56935 * 20 18 16 24 24 C 1.43429 * 118.92343 * 289.58268 * 15 14 13 25 25 C 1.54911 * 116.07769 * 91.57215 * 24 15 14 26 26 C 1.52996 * 109.35725 * 78.84473 * 25 24 15 27 27 C 1.52993 * 109.35656 * 198.57012 * 25 24 15 28 28 C 1.50124 * 110.25387 * 156.92984 * 11 10 8 29 29 C 1.39677 * 120.49077 * 326.92049 * 3 2 1 30 30 H 4.52739 * 13.92764 * 0.02562 * 4 2 1 31 31 H 1.07998 * 119.55467 * 359.97438 * 4 3 2 32 32 H 1.07994 * 119.55940 * 180.28649 * 6 5 4 33 33 H 0.97001 * 120.00126 * 359.97438 * 10 8 7 34 34 H 1.08997 * 108.52211 * 272.85939 * 13 11 10 35 35 H 1.09001 * 108.52566 * 30.37479 * 13 11 10 36 36 H 1.09000 * 109.84297 * 177.91377 * 14 13 11 37 37 H 1.08995 * 109.84563 * 298.83424 * 14 13 11 38 38 H 0.96993 * 119.99760 * 180.02562 * 19 18 16 39 39 H 1.08993 * 108.15944 * 213.28674 * 24 15 14 40 40 H 1.08998 * 108.16147 * 329.85535 * 24 15 14 41 41 H 1.09000 * 109.47523 * 59.99752 * 26 25 24 42 42 H 1.09002 * 109.47155 * 180.02562 * 26 25 24 43 43 H 1.09007 * 109.47055 * 299.99905 * 26 25 24 44 44 H 1.09001 * 109.47414 * 60.00244 * 27 25 24 45 45 H 1.09007 * 109.46665 * 179.97438 * 27 25 24 46 46 H 1.08995 * 109.47618 * 299.99705 * 27 25 24 47 47 H 1.09002 * 109.20700 * 336.99970 * 28 11 10 48 48 H 1.09002 * 109.20955 * 96.30988 * 28 11 10 49 49 H 1.07997 * 120.92155 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3141 1.0095 -0.6562 5 7 4.6315 1.0180 -0.6607 6 6 5.3385 0.0869 -0.0535 7 6 4.7119 -0.9588 0.6268 8 6 5.5138 -1.9997 1.3049 9 8 4.9590 -2.9064 1.8943 10 7 6.8599 -1.9429 1.2696 11 6 7.6544 -2.9739 1.9420 12 1 7.1553 -3.9402 1.8707 13 6 7.8750 -2.6003 3.4042 14 6 8.0458 -3.7450 4.2981 15 7 9.2236 -4.5340 3.8027 16 6 10.3950 -4.5547 4.5116 17 1 10.7592 -3.6518 4.9793 18 6 11.1144 -5.7359 4.6292 19 7 12.4056 -5.6979 4.8821 20 14 10.2501 -7.3798 4.4284 21 1 10.4057 -7.8533 3.0295 22 1 10.8508 -8.3714 5.3563 23 1 8.8068 -7.2215 4.7397 24 6 9.1018 -5.2653 2.5749 25 6 9.5274 -4.5131 1.2892 26 6 11.0532 -4.5240 1.1769 27 6 8.9241 -5.2123 0.0695 28 6 9.0255 -3.0513 1.3354 29 6 3.3152 -1.0076 0.6569 30 1 -1.0500 -0.0005 0.0009 31 1 2.7745 1.7934 -1.1669 32 1 6.4170 0.1355 -0.0788 33 1 7.3026 -1.2194 0.7990 34 1 8.7640 -1.9731 3.4711 35 1 7.0188 -2.0188 3.7461 36 1 8.2344 -3.3967 5.3136 37 1 7.1497 -4.3653 4.2803 38 1 12.9083 -6.5233 4.9639 39 1 9.7066 -6.1684 2.6560 40 1 8.0611 -5.5689 2.4621 41 1 11.4069 -5.5540 1.1305 42 1 11.3548 -3.9947 0.2730 43 1 11.4851 -4.0305 2.0476 44 1 7.8371 -5.2100 0.1500 45 1 9.2221 -4.6842 -0.8363 46 1 9.2829 -6.2406 0.0256 47 1 8.9925 -2.6507 0.3222 48 1 9.7162 -2.4564 1.9331 49 1 2.7988 -1.8026 1.1742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089487452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:50 Heat of formation + Delta-G solvation = 80.602705 kcal Electronic energy + Delta-G solvation = -30054.847579 eV Core-core repulsion = 26177.263525 eV Total energy + Delta-G solvation = -3877.584054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.00981 -39.75804 -38.32935 -35.13509 -34.70751 -34.35637 -32.95324 -32.19837 -31.18212 -30.34536 -27.86149 -26.67979 -25.64641 -25.18859 -24.49364 -23.64904 -21.98264 -21.04810 -20.13173 -19.51187 -18.43209 -17.71733 -17.29253 -16.79618 -16.45149 -15.86322 -15.38834 -15.24148 -14.96816 -14.82889 -14.28533 -13.97176 -13.93250 -13.58728 -13.51424 -13.25054 -12.98163 -12.81448 -12.52590 -12.15725 -12.09399 -11.99296 -11.86434 -11.52514 -11.32111 -11.26299 -10.91930 -10.75990 -10.58611 -10.46804 -10.37885 -10.33688 -10.16685 -9.91710 -9.83332 -9.67921 -9.67746 -9.46368 -9.28628 -8.92178 -8.42603 -6.71763 -5.99995 -3.41701 0.08184 0.52744 2.21792 2.35207 2.92108 3.01690 3.34293 3.49108 3.56782 3.58190 3.65045 3.90469 4.31020 4.40404 4.49710 4.55154 4.75231 4.87019 4.97863 5.16340 5.26796 5.28408 5.37704 5.40141 5.56423 5.59856 5.66024 5.71769 5.78581 5.98747 6.03489 6.07391 6.13598 6.18520 6.21209 6.32675 6.39886 6.47520 6.54119 6.66434 6.70413 6.73275 6.79260 6.84845 6.93120 7.00914 7.01577 7.27777 7.34299 7.44417 8.09983 8.11101 8.37328 9.03130 9.73247 10.18880 11.15192 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.002612 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.555038 B =10718.761184 C =11077.621157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.154 4.154 3 C -0.046 4.046 4 C 0.144 3.856 5 N -0.481 5.481 6 C 0.141 3.859 7 C -0.178 4.178 8 C 0.560 3.440 9 O -0.528 6.528 10 N -0.713 5.713 11 C 0.149 3.851 12 H 0.096 0.904 13 C -0.137 4.137 14 C 0.138 3.862 15 N -0.598 5.598 16 C -0.264 4.264 17 H 0.075 0.925 18 C 0.045 3.955 19 N -0.895 5.895 20 Si 0.870 3.130 21 H -0.286 1.286 22 H -0.302 1.302 23 H -0.269 1.269 24 C 0.156 3.844 25 C -0.083 4.083 26 C -0.128 4.128 27 C -0.139 4.139 28 C -0.104 4.104 29 C 0.004 3.996 30 H 0.228 0.772 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.395 0.605 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.262 0.738 39 H 0.045 0.955 40 H 0.028 0.972 41 H 0.045 0.955 42 H 0.032 0.968 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.077 0.923 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.267 12.234 -12.742 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.155 4.155 3 C -0.049 4.049 4 C -0.014 4.014 5 N -0.189 5.189 6 C -0.017 4.017 7 C -0.183 4.183 8 C 0.345 3.655 9 O -0.405 6.405 10 N -0.364 5.364 11 C 0.046 3.954 12 H 0.114 0.886 13 C -0.177 4.177 14 C 0.014 3.986 15 N -0.320 5.320 16 C -0.392 4.392 17 H 0.092 0.908 18 C -0.156 4.156 19 N -0.536 5.536 20 Si 0.700 3.300 21 H -0.213 1.213 22 H -0.230 1.230 23 H -0.194 1.194 24 C 0.028 3.972 25 C -0.087 4.087 26 C -0.185 4.185 27 C -0.197 4.197 28 C -0.142 4.142 29 C -0.022 4.022 30 H 0.245 0.755 31 H 0.183 0.817 32 H 0.181 0.819 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.010 12.149 -12.648 24.432 hybrid contribution -0.730 -1.310 0.041 1.500 sum -17.740 10.839 -12.608 24.314 Atomic orbital electron populations 1.24951 0.95737 0.98197 0.98347 1.19569 0.91456 1.02300 1.02160 1.16856 0.88233 0.97693 1.02071 1.23148 0.89677 0.95431 0.93136 1.67728 1.07577 1.25361 1.18187 1.23131 1.00598 0.88073 0.89924 1.21051 0.94767 0.98886 1.03582 1.17916 0.82462 0.84814 0.80292 1.90812 1.71245 1.35057 1.43397 1.46183 1.05469 1.29588 1.55113 1.20439 0.91555 0.91009 0.92393 0.88595 1.21302 1.00926 1.00664 0.94795 1.20380 0.89985 0.91840 0.96379 1.44192 1.10521 1.58315 1.18979 1.18640 0.96064 0.94605 1.29919 0.90780 1.25483 0.95271 0.97571 0.97317 1.69882 1.05729 1.27589 1.50393 0.87018 0.81094 0.85345 0.76554 1.21346 1.23049 1.19417 1.20785 0.97411 0.93818 0.85162 1.21791 0.96233 0.94114 0.96527 1.21727 0.94218 1.01318 1.01233 1.21881 1.00071 1.00346 0.97363 1.21764 0.94669 0.98271 0.99487 1.21839 0.92474 0.95842 0.92066 0.75549 0.81731 0.81884 0.76953 0.91578 0.93462 0.91268 0.94825 0.92783 0.93763 0.95337 0.93592 0.94846 0.90284 0.93358 0.93305 0.93041 0.93089 0.90465 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 19.25 29.55 0.57 -0.44 16 2 C -0.15 -1.34 13.27 -38.84 -0.52 -1.85 16 3 C -0.05 -0.43 5.73 -106.91 -0.61 -1.05 16 4 C 0.14 1.22 10.91 -17.06 -0.19 1.04 16 5 N -0.48 -4.61 10.33 -12.59 -0.13 -4.74 16 6 C 0.14 1.27 10.71 -17.08 -0.18 1.09 16 7 C -0.18 -1.91 5.89 -104.87 -0.62 -2.52 16 8 C 0.56 7.43 7.71 -12.32 -0.09 7.34 16 9 O -0.53 -9.03 16.10 5.33 0.09 -8.95 16 10 N -0.71 -8.54 4.93 -56.39 -0.28 -8.82 16 11 C 0.15 2.25 2.13 -69.60 -0.15 2.10 16 12 H 0.10 1.69 5.22 -51.93 -0.27 1.41 16 13 C -0.14 -2.26 4.91 -30.19 -0.15 -2.41 16 14 C 0.14 2.70 6.11 -5.20 -0.03 2.67 16 15 N -0.60 -13.46 2.13 -175.08 -0.37 -13.84 16 16 C -0.26 -6.95 9.24 -15.06 -0.14 -7.09 16 17 H 0.07 2.12 8.06 -52.48 -0.42 1.70 16 18 C 0.04 1.24 5.28 -17.43 -0.09 1.15 16 19 N -0.90 -26.28 13.97 55.49 0.78 -25.50 16 20 Si 0.87 22.06 25.26 -169.99 -4.29 17.76 16 21 H -0.29 -7.09 6.74 56.52 0.38 -6.70 16 22 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 23 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.16 3.30 3.04 -4.66 -0.01 3.28 16 25 C -0.08 -1.45 0.77 -152.65 -0.12 -1.57 16 26 C -0.13 -2.39 8.29 37.16 0.31 -2.08 16 27 C -0.14 -2.11 8.19 37.15 0.30 -1.80 16 28 C -0.10 -1.57 4.14 -27.30 -0.11 -1.68 16 29 C 0.00 0.04 9.44 -38.46 -0.36 -0.32 16 30 H 0.23 0.57 7.80 -54.09 -0.42 0.15 16 31 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.16 1.05 6.41 -52.49 -0.34 0.71 16 33 H 0.40 3.50 6.54 -40.82 -0.27 3.23 16 34 H 0.07 1.11 6.94 -51.93 -0.36 0.75 16 35 H 0.05 0.75 7.96 -51.93 -0.41 0.33 16 36 H 0.07 1.35 7.99 -51.93 -0.42 0.94 16 37 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.04 1.05 3.25 -51.93 -0.17 0.88 16 40 H 0.03 0.58 6.68 -51.93 -0.35 0.24 16 41 H 0.04 0.90 8.13 -51.93 -0.42 0.48 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.73 7.45 -51.93 -0.39 1.34 16 44 H 0.05 0.71 7.56 -51.93 -0.39 0.32 16 45 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.05 0.65 7.64 -51.93 -0.40 0.25 16 48 H 0.08 1.27 6.66 -51.93 -0.35 0.93 16 49 H 0.15 1.63 7.73 -52.49 -0.41 1.22 16 LS Contribution 389.58 15.07 5.87 5.87 Total: -1.00 -31.93 389.58 -7.58 -39.51 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.04 Total: 2.86 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.19 Total: -4.15 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.01 Total: -52.90 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.29 Total: 17.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.93 -7.58 -39.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089487452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.112 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds