Wall clock time and date at job start Wed Apr 1 2020 00:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39637 * 120.49095 * 146.94989 * 3 2 1 5 5 N 1.31750 * 120.88370 * 179.97438 * 4 3 2 6 6 C 1.31735 * 122.04065 * 359.97438 * 5 4 3 7 7 C 1.39602 * 120.87720 * 0.02562 * 6 5 4 8 8 C 1.47862 * 120.48936 * 179.97438 * 7 6 5 9 9 O 1.21546 * 119.99909 * 180.02562 * 8 7 6 10 10 N 1.34772 * 119.99905 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00083 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.21049 * 34.99614 * 11 10 8 13 13 C 1.52523 * 110.24839 * 273.06476 * 11 10 8 14 14 C 1.46240 * 114.27837 * 151.61552 * 13 11 10 15 15 N 1.50174 * 107.52906 * 58.41050 * 14 13 11 16 16 C 1.36938 * 120.53694 * 109.56930 * 15 14 13 17 17 H 1.08005 * 119.99554 * 320.02294 * 16 15 14 18 18 C 1.38807 * 119.99996 * 140.02358 * 16 15 14 19 19 N 1.31625 * 120.00101 * 156.57304 * 18 16 15 20 20 Si 1.86801 * 120.00085 * 336.57131 * 18 16 15 21 21 H 1.48504 * 109.47244 * 95.56729 * 20 18 16 22 22 H 1.48496 * 109.47170 * 215.56435 * 20 18 16 23 23 H 1.48497 * 109.47312 * 335.56935 * 20 18 16 24 24 C 1.43429 * 118.92343 * 289.58268 * 15 14 13 25 25 C 1.54911 * 116.07769 * 91.57215 * 24 15 14 26 26 C 1.52996 * 109.35725 * 78.84473 * 25 24 15 27 27 C 1.52993 * 109.35656 * 198.57012 * 25 24 15 28 28 C 1.50124 * 110.25387 * 156.92984 * 11 10 8 29 29 C 1.39677 * 120.49077 * 326.92049 * 3 2 1 30 30 H 4.52739 * 13.92764 * 0.02562 * 4 2 1 31 31 H 1.07998 * 119.55467 * 359.97438 * 4 3 2 32 32 H 1.07994 * 119.55940 * 180.28649 * 6 5 4 33 33 H 0.97001 * 120.00126 * 359.97438 * 10 8 7 34 34 H 1.08997 * 108.52211 * 272.85939 * 13 11 10 35 35 H 1.09001 * 108.52566 * 30.37479 * 13 11 10 36 36 H 1.09000 * 109.84297 * 177.91377 * 14 13 11 37 37 H 1.08995 * 109.84563 * 298.83424 * 14 13 11 38 38 H 0.96993 * 119.99760 * 180.02562 * 19 18 16 39 39 H 1.08993 * 108.15944 * 213.28674 * 24 15 14 40 40 H 1.08998 * 108.16147 * 329.85535 * 24 15 14 41 41 H 1.09000 * 109.47523 * 59.99752 * 26 25 24 42 42 H 1.09002 * 109.47155 * 180.02562 * 26 25 24 43 43 H 1.09007 * 109.47055 * 299.99905 * 26 25 24 44 44 H 1.09001 * 109.47414 * 60.00244 * 27 25 24 45 45 H 1.09007 * 109.46665 * 179.97438 * 27 25 24 46 46 H 1.08995 * 109.47618 * 299.99705 * 27 25 24 47 47 H 1.09002 * 109.20700 * 336.99970 * 28 11 10 48 48 H 1.09002 * 109.20955 * 96.30988 * 28 11 10 49 49 H 1.07997 * 120.92155 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3141 1.0095 -0.6562 5 7 4.6315 1.0180 -0.6607 6 6 5.3385 0.0869 -0.0535 7 6 4.7119 -0.9588 0.6268 8 6 5.5138 -1.9997 1.3049 9 8 4.9590 -2.9064 1.8943 10 7 6.8599 -1.9429 1.2696 11 6 7.6544 -2.9739 1.9420 12 1 7.1553 -3.9402 1.8707 13 6 7.8750 -2.6003 3.4042 14 6 8.0458 -3.7450 4.2981 15 7 9.2236 -4.5340 3.8027 16 6 10.3950 -4.5547 4.5116 17 1 10.7592 -3.6518 4.9793 18 6 11.1144 -5.7359 4.6292 19 7 12.4056 -5.6979 4.8821 20 14 10.2501 -7.3798 4.4284 21 1 10.4057 -7.8533 3.0295 22 1 10.8508 -8.3714 5.3563 23 1 8.8068 -7.2215 4.7397 24 6 9.1018 -5.2653 2.5749 25 6 9.5274 -4.5131 1.2892 26 6 11.0532 -4.5240 1.1769 27 6 8.9241 -5.2123 0.0695 28 6 9.0255 -3.0513 1.3354 29 6 3.3152 -1.0076 0.6569 30 1 -1.0500 -0.0005 0.0009 31 1 2.7745 1.7934 -1.1669 32 1 6.4170 0.1355 -0.0788 33 1 7.3026 -1.2194 0.7990 34 1 8.7640 -1.9731 3.4711 35 1 7.0188 -2.0188 3.7461 36 1 8.2344 -3.3967 5.3136 37 1 7.1497 -4.3653 4.2803 38 1 12.9083 -6.5233 4.9639 39 1 9.7066 -6.1684 2.6560 40 1 8.0611 -5.5689 2.4621 41 1 11.4069 -5.5540 1.1305 42 1 11.3548 -3.9947 0.2730 43 1 11.4851 -4.0305 2.0476 44 1 7.8371 -5.2100 0.1500 45 1 9.2221 -4.6842 -0.8363 46 1 9.2829 -6.2406 0.0256 47 1 8.9925 -2.6507 0.3222 48 1 9.7162 -2.4564 1.9331 49 1 2.7988 -1.8026 1.1742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089487452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:49 Heat of formation + Delta-G solvation = 60.839879 kcal Electronic energy + Delta-G solvation = -30055.704559 eV Core-core repulsion = 26177.263525 eV Total energy + Delta-G solvation = -3878.441035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.88422 -40.88084 -39.59798 -36.45119 -35.91266 -35.39533 -34.23364 -33.49796 -32.39164 -31.39101 -29.23445 -28.10989 -27.42386 -26.06373 -25.44140 -24.98883 -23.28260 -22.22092 -21.55948 -20.50377 -19.79354 -18.52960 -18.32951 -17.99221 -17.72922 -17.17469 -16.58410 -16.48241 -16.24488 -15.95384 -15.50599 -15.28377 -15.16649 -14.83821 -14.78100 -14.49582 -14.30507 -13.98043 -13.92287 -13.69227 -13.55208 -13.31926 -13.00114 -12.94895 -12.69964 -12.56280 -12.34636 -12.15774 -12.02168 -11.91839 -11.82932 -11.63025 -11.58751 -11.30851 -11.20543 -11.13954 -10.95063 -10.55978 -10.51511 -10.13511 -9.87678 -8.62415 -8.16779 -5.53395 -0.61010 -0.21381 1.28856 1.39260 1.49761 1.59068 1.64613 2.02473 2.13843 2.43942 2.87138 3.06575 3.08075 3.27783 3.32137 3.64728 3.65556 3.71462 3.80617 3.92880 3.97838 4.09004 4.26063 4.29614 4.35797 4.43022 4.59638 4.66649 4.74236 4.78424 4.83695 4.86171 4.87836 4.91419 5.01973 5.03234 5.07599 5.11199 5.12148 5.24197 5.27513 5.37983 5.39610 5.46625 5.49881 5.61578 5.72552 6.01700 6.22641 6.45661 6.49385 6.67688 7.05310 7.12699 7.67670 8.16129 9.02496 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.002612 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.555038 B =10718.761184 C =11077.621157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.207 4.207 3 C -0.047 4.047 4 C 0.149 3.851 5 N -0.492 5.492 6 C 0.148 3.852 7 C -0.188 4.188 8 C 0.564 3.436 9 O -0.572 6.572 10 N -0.698 5.698 11 C 0.161 3.839 12 H 0.076 0.924 13 C -0.129 4.129 14 C 0.139 3.861 15 N -0.607 5.607 16 C -0.239 4.239 17 H 0.044 0.956 18 C -0.001 4.001 19 N -0.937 5.937 20 Si 0.921 3.079 21 H -0.279 1.279 22 H -0.310 1.310 23 H -0.270 1.270 24 C 0.151 3.849 25 C -0.081 4.081 26 C -0.119 4.119 27 C -0.133 4.133 28 C -0.095 4.095 29 C -0.009 4.009 30 H 0.264 0.736 31 H 0.191 0.809 32 H 0.191 0.809 33 H 0.414 0.586 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.261 0.739 39 H 0.018 0.982 40 H 0.034 0.966 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.039 0.961 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.087 0.913 48 H 0.064 0.936 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.539 14.009 -15.469 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.208 4.208 3 C -0.049 4.049 4 C -0.008 4.008 5 N -0.200 5.200 6 C -0.009 4.009 7 C -0.193 4.193 8 C 0.351 3.649 9 O -0.452 6.452 10 N -0.350 5.350 11 C 0.057 3.943 12 H 0.094 0.906 13 C -0.169 4.169 14 C 0.016 3.984 15 N -0.330 5.330 16 C -0.369 4.369 17 H 0.062 0.938 18 C -0.198 4.198 19 N -0.581 5.581 20 Si 0.751 3.249 21 H -0.206 1.206 22 H -0.239 1.239 23 H -0.195 1.195 24 C 0.024 3.976 25 C -0.084 4.084 26 C -0.177 4.177 27 C -0.190 4.190 28 C -0.133 4.133 29 C -0.035 4.035 30 H 0.280 0.720 31 H 0.208 0.792 32 H 0.207 0.793 33 H 0.253 0.747 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.036 0.964 40 H 0.052 0.948 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.064 0.936 47 H 0.106 0.894 48 H 0.082 0.918 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.305 13.959 -15.418 28.377 hybrid contribution -0.180 -1.755 0.886 1.974 sum -19.485 12.204 -14.532 27.199 Atomic orbital electron populations 1.25874 0.96483 0.95709 0.95762 1.19858 0.91967 1.04574 1.04417 1.16943 0.88972 0.97349 1.01659 1.23586 0.89540 0.95477 0.92242 1.67828 1.08078 1.25487 1.18562 1.23472 1.01768 0.87002 0.88703 1.20812 0.94503 0.99104 1.04853 1.18234 0.82607 0.84587 0.79510 1.90793 1.72065 1.36952 1.45418 1.45911 1.05018 1.29383 1.54650 1.20075 0.91697 0.90993 0.91583 0.90620 1.21143 1.01159 0.99141 0.95480 1.20449 0.88584 0.92465 0.96949 1.44268 1.10231 1.58810 1.19718 1.18469 0.96789 0.93167 1.28505 0.93814 1.25891 0.95567 0.99967 0.98381 1.69974 1.06912 1.27945 1.53270 0.86183 0.79809 0.82361 0.76526 1.20602 1.23876 1.19499 1.20865 0.97211 0.93313 0.86182 1.21701 0.95528 0.95638 0.95576 1.21616 0.94960 1.00091 1.00991 1.21822 1.00161 1.00067 0.96983 1.21642 0.93926 0.96316 1.01427 1.21865 0.92747 0.96236 0.92637 0.72044 0.79205 0.79254 0.74724 0.91767 0.92548 0.91910 0.94871 0.93029 0.96441 0.94781 0.95378 0.91530 0.94173 0.92835 0.90478 0.93629 0.89430 0.91778 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 19.25 74.32 1.43 0.18 16 2 C -0.21 -3.26 13.27 30.02 0.40 -2.86 16 3 C -0.05 -0.82 5.73 -21.35 -0.12 -0.94 16 4 C 0.15 2.20 10.91 85.04 0.93 3.13 16 5 N -0.49 -8.15 10.33 -193.76 -2.00 -10.15 16 6 C 0.15 2.29 10.71 85.04 0.91 3.20 16 7 C -0.19 -3.75 5.89 -20.02 -0.12 -3.87 16 8 C 0.56 14.17 7.71 86.79 0.67 14.84 16 9 O -0.57 -19.41 16.10 -3.86 -0.06 -19.48 16 10 N -0.70 -14.97 4.93 -450.60 -2.22 -17.19 16 11 C 0.16 4.56 2.13 43.91 0.09 4.65 16 12 H 0.08 2.55 5.22 -2.39 -0.01 2.54 16 13 C -0.13 -4.16 4.91 28.35 0.14 -4.02 16 14 C 0.14 5.45 6.11 83.58 0.51 5.96 16 15 N -0.61 -27.67 2.13 -707.83 -1.51 -29.18 16 16 C -0.24 -13.01 9.24 84.03 0.78 -12.23 16 17 H 0.04 2.63 8.06 -2.91 -0.02 2.60 16 18 C 0.00 -0.04 5.28 84.86 0.45 0.41 16 19 N -0.94 -56.99 13.97 21.65 0.30 -56.69 16 20 Si 0.92 46.82 25.26 68.60 1.73 48.55 16 21 H -0.28 -13.69 6.74 99.48 0.67 -13.02 16 22 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 23 H -0.27 -13.58 7.11 99.48 0.71 -12.87 16 24 C 0.15 6.35 3.04 87.60 0.27 6.61 16 25 C -0.08 -2.71 0.77 -50.98 -0.04 -2.75 16 26 C -0.12 -4.37 8.29 71.98 0.60 -3.77 16 27 C -0.13 -3.64 8.19 71.98 0.59 -3.05 16 28 C -0.10 -2.63 4.14 30.22 0.12 -2.51 16 29 C -0.01 -0.18 9.44 22.99 0.22 0.04 16 30 H 0.26 0.27 7.80 -4.42 -0.03 0.23 16 31 H 0.19 1.69 8.06 -2.91 -0.02 1.66 16 32 H 0.19 1.71 6.41 -2.91 -0.02 1.69 16 33 H 0.41 5.79 6.54 -92.71 -0.61 5.18 16 34 H 0.06 2.11 6.94 -2.39 -0.02 2.09 16 35 H 0.06 1.72 7.96 -2.39 -0.02 1.70 16 36 H 0.06 2.50 7.99 -2.39 -0.02 2.48 16 37 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.02 0.83 3.25 -2.39 -0.01 0.83 16 40 H 0.03 1.38 6.68 -2.39 -0.02 1.36 16 41 H 0.03 1.09 8.13 -2.39 -0.02 1.07 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.04 1.77 7.45 -2.38 -0.02 1.75 16 44 H 0.05 1.42 7.56 -2.39 -0.02 1.41 16 45 H 0.08 1.70 8.12 -2.38 -0.02 1.69 16 46 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.09 1.82 7.64 -2.39 -0.02 1.80 16 48 H 0.06 1.99 6.66 -2.39 -0.02 1.97 16 49 H 0.14 3.11 7.73 -2.91 -0.02 3.09 16 Total: -1.00 -72.58 389.58 4.38 -68.19 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.33 Total: 12.92 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 7.82 Total: 3.03 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -5.43 Total: -113.21 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.06 Total: -19.48 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.73 Total: 48.55 kcal Total: -72.58 4.38 -68.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089487452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.033 kcal (2) G-P(sol) polarization free energy of solvation -72.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds