Wall clock time and date at job start Wed Apr 1 2020 00:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39987 * 120.46213 * 333.91149 * 3 2 1 5 5 C 1.38224 * 118.37045 * 180.25209 * 4 3 2 6 6 C 1.39493 * 119.20409 * 0.02834 * 5 4 3 7 7 C 1.47992 * 119.56914 * 179.97438 * 6 5 4 8 8 O 1.21537 * 119.99603 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99840 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99897 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.48992 * 325.05407 * 10 9 7 12 12 C 1.50882 * 109.48523 * 85.11985 * 10 9 7 13 13 C 1.53926 * 110.08183 * 211.85953 * 12 10 9 14 14 N 1.47609 * 112.15796 * 319.41348 * 13 12 10 15 15 C 1.36932 * 118.63896 * 137.87926 * 14 13 12 16 16 H 1.08007 * 119.99177 * 205.56343 * 15 14 13 17 17 C 1.38806 * 120.00413 * 25.56970 * 15 14 13 18 18 N 1.31617 * 120.00176 * 17.89592 * 17 15 14 19 19 Si 1.86807 * 120.00039 * 197.90052 * 17 15 14 20 20 H 1.48500 * 109.46985 * 89.99654 * 19 17 15 21 21 H 1.48499 * 109.47014 * 209.99624 * 19 17 15 22 22 H 1.48498 * 109.47016 * 329.99828 * 19 17 15 23 23 C 1.44582 * 122.71004 * 317.89962 * 14 13 12 24 24 C 1.54864 * 109.59626 * 90.70531 * 23 14 13 25 25 C 1.53009 * 109.32595 * 168.46675 * 24 23 14 26 26 C 1.52996 * 109.19069 * 48.90499 * 24 23 14 27 27 C 1.47090 * 110.32455 * 288.72764 * 24 23 14 28 28 N 1.32828 * 120.85880 * 359.97438 * 6 5 4 29 29 C 1.31291 * 121.79070 * 0.02562 * 28 6 5 30 30 H 4.52932 * 13.94725 * 359.97438 * 4 2 1 31 31 H 1.08000 * 120.81897 * 0.27961 * 4 3 2 32 32 H 1.07998 * 120.39925 * 180.02562 * 5 4 3 33 33 H 0.96999 * 120.00338 * 0.02562 * 9 7 6 34 34 H 1.09004 * 109.36863 * 332.03907 * 12 10 9 35 35 H 1.08998 * 109.36923 * 91.66370 * 12 10 9 36 36 H 1.09000 * 108.92880 * 198.72892 * 13 12 10 37 37 H 1.08993 * 108.94481 * 80.11227 * 13 12 10 38 38 H 0.97001 * 120.00070 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.45174 * 330.66178 * 23 14 13 40 40 H 1.09001 * 109.42374 * 210.72677 * 23 14 13 41 41 H 1.08997 * 109.47152 * 180.86792 * 25 24 23 42 42 H 1.08997 * 109.47042 * 300.86916 * 25 24 23 43 43 H 1.08998 * 109.46430 * 60.86878 * 25 24 23 44 44 H 1.09005 * 109.47053 * 299.21411 * 26 24 23 45 45 H 1.09002 * 109.47359 * 59.21808 * 26 24 23 46 46 H 1.09001 * 109.47596 * 179.21703 * 26 24 23 47 47 H 1.09005 * 108.51385 * 301.55377 * 27 24 23 48 48 H 1.09003 * 108.39101 * 183.97214 * 27 24 23 49 49 H 1.08003 * 119.65130 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3161 -1.0827 0.5306 5 6 4.6974 -1.0345 0.5133 6 6 5.3326 0.0835 -0.0276 7 6 6.8112 0.1439 -0.0498 8 8 7.4637 -0.7766 0.4018 9 7 7.4339 1.2197 -0.5707 10 6 8.8975 1.2797 -0.5922 11 1 9.2944 0.7961 0.3003 12 6 9.4123 0.5708 -1.8206 13 6 10.7782 -0.0743 -1.5250 14 7 11.6405 0.7989 -0.7047 15 6 12.3643 0.2374 0.3131 16 1 12.6608 0.8383 1.1602 17 6 12.7172 -1.1039 0.2560 18 7 12.6789 -1.7462 -0.8921 19 14 13.2463 -1.9973 1.8089 20 1 12.0562 -2.5945 2.4663 21 1 14.2093 -3.0719 1.4579 22 1 13.8941 -1.0358 2.7368 23 6 11.7519 2.2225 -0.9312 24 6 10.6940 2.9681 -0.0807 25 6 10.9967 4.4679 -0.0970 26 6 10.7541 2.4551 1.3594 27 6 9.3467 2.7374 -0.6240 28 7 4.6277 1.0945 -0.5229 29 6 3.3149 1.0868 -0.5250 30 1 -1.0500 -0.0006 0.0009 31 1 2.7976 -1.9356 0.9431 32 1 5.2779 -1.8524 0.9136 33 1 6.9130 1.9545 -0.9308 34 1 8.7033 -0.2029 -2.1152 35 1 9.5198 1.2886 -2.6338 36 1 11.2820 -0.2836 -2.4687 37 1 10.6188 -1.0132 -0.9950 38 1 12.9252 -2.6836 -0.9319 39 1 11.5852 2.4362 -1.9869 40 1 12.7490 2.5580 -0.6460 41 1 10.2625 4.9933 0.5135 42 1 11.9948 4.6415 0.3051 43 1 10.9484 4.8370 -1.1215 44 1 10.5327 1.3879 1.3745 45 1 11.7517 2.6251 1.7644 46 1 10.0206 2.9869 1.9655 47 1 9.3263 3.0834 -1.6574 48 1 8.6372 3.3309 -0.0474 49 1 2.7763 1.9278 -0.9363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089543744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:30 Heat of formation + Delta-G solvation = 78.546425 kcal Electronic energy + Delta-G solvation = -30179.395470 eV Core-core repulsion = 26301.722249 eV Total energy + Delta-G solvation = -3877.673221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.80681 -39.56093 -38.20645 -34.80675 -34.65212 -34.32425 -32.54993 -31.62446 -30.92284 -30.14968 -27.45504 -26.64268 -25.55294 -25.28198 -23.91111 -23.63656 -22.16879 -20.65696 -19.51580 -19.48433 -18.45176 -17.55246 -17.01189 -16.57654 -15.97357 -15.63960 -15.13886 -15.09869 -14.75242 -14.43954 -14.03689 -13.84884 -13.79647 -13.54032 -13.53341 -13.16839 -12.78905 -12.69095 -12.24322 -12.00462 -11.88580 -11.52362 -11.31795 -11.27696 -11.20993 -10.99504 -10.93112 -10.70611 -10.53924 -10.31723 -10.14965 -10.09689 -10.05798 -9.81141 -9.63758 -9.57535 -9.52294 -9.40665 -9.13167 -8.63839 -8.25510 -6.57028 -5.67707 -3.09061 0.07291 0.89477 2.24116 2.31969 3.10754 3.25649 3.47343 3.53812 3.55306 3.71153 3.78040 4.00894 4.41473 4.60597 4.63946 4.77701 4.92783 5.15629 5.28543 5.35946 5.43528 5.49930 5.56471 5.60497 5.66350 5.76501 5.77486 6.02083 6.06068 6.18817 6.20537 6.23130 6.30634 6.32261 6.41797 6.44745 6.54838 6.64678 6.69522 6.82551 6.88261 6.92334 6.99142 7.01470 7.14334 7.36707 7.39999 7.52259 7.80438 7.85086 7.95719 8.44946 8.57561 9.34267 10.02025 10.46225 11.40002 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.003028 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.518128 B = 9243.481374 C =10482.735256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.153 4.153 3 C -0.028 4.028 4 C -0.059 4.059 5 C -0.110 4.110 6 C 0.095 3.905 7 C 0.560 3.440 8 O -0.517 6.517 9 N -0.704 5.704 10 C 0.147 3.853 11 H 0.111 0.889 12 C -0.147 4.147 13 C 0.182 3.818 14 N -0.587 5.587 15 C -0.256 4.256 16 H 0.070 0.930 17 C 0.006 3.994 18 N -0.902 5.902 19 Si 0.894 3.106 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.280 1.280 23 C 0.169 3.831 24 C -0.093 4.093 25 C -0.133 4.133 26 C -0.131 4.131 27 C -0.097 4.097 28 N -0.455 5.455 29 C 0.124 3.876 30 H 0.227 0.773 31 H 0.145 0.855 32 H 0.157 0.843 33 H 0.402 0.598 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.025 0.975 37 H 0.078 0.922 38 H 0.252 0.748 39 H 0.031 0.969 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.026 0.974 47 H 0.054 0.946 48 H 0.050 0.950 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.084 7.652 -0.026 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C -0.030 4.030 4 C -0.084 4.084 5 C -0.131 4.131 6 C -0.043 4.043 7 C 0.343 3.657 8 O -0.392 6.392 9 N -0.354 5.354 10 C 0.045 3.955 11 H 0.129 0.871 12 C -0.187 4.187 13 C 0.056 3.944 14 N -0.308 5.308 15 C -0.386 4.386 16 H 0.088 0.912 17 C -0.193 4.193 18 N -0.546 5.546 19 Si 0.724 3.276 20 H -0.214 1.214 21 H -0.220 1.220 22 H -0.205 1.205 23 C 0.040 3.960 24 C -0.096 4.096 25 C -0.191 4.191 26 C -0.188 4.188 27 C -0.135 4.135 28 N -0.166 5.166 29 C -0.037 4.037 30 H 0.244 0.756 31 H 0.163 0.837 32 H 0.174 0.826 33 H 0.237 0.763 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.045 0.955 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -19.996 7.511 -0.113 21.360 hybrid contribution -0.843 -0.878 0.876 1.500 sum -20.839 6.633 0.764 21.883 Atomic orbital electron populations 1.24947 0.95739 0.98480 0.98403 1.19688 0.91578 1.02060 1.02001 1.17146 0.87993 0.96541 1.01327 1.21684 0.93535 0.97467 0.95724 1.22134 0.94415 0.99062 0.97471 1.21560 0.95019 0.91150 0.96526 1.17769 0.85264 0.83446 0.79200 1.90888 1.65376 1.36707 1.46228 1.46171 1.08554 1.20324 1.60329 1.20725 0.76355 0.96621 1.01828 0.87111 1.22449 1.00551 0.99482 0.96220 1.20943 0.84975 0.93420 0.95035 1.43654 1.48448 1.01560 1.37100 1.19266 1.28264 0.93708 0.97324 0.91214 1.24976 0.99503 0.98623 0.96164 1.70078 1.51856 1.10011 1.22637 0.86415 0.77958 0.79655 0.83534 1.21366 1.21991 1.20542 1.20720 0.95191 0.85140 0.94959 1.20460 0.96452 0.94719 0.98006 1.21798 1.00981 0.95679 1.00625 1.21937 0.99882 1.02928 0.94085 1.20595 0.97413 0.94757 1.00724 1.67601 1.08143 1.26524 1.14337 1.22926 0.89126 0.96575 0.95069 0.75611 0.83677 0.82568 0.76330 0.92667 0.93507 0.95644 0.90396 0.93819 0.95051 0.93527 0.93755 0.92833 0.93398 0.89915 0.93416 0.95496 0.92733 0.93150 0.81688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 19.25 29.55 0.57 -0.42 16 2 C -0.15 -1.30 13.28 -38.84 -0.52 -1.81 16 3 C -0.03 -0.27 5.75 -106.68 -0.61 -0.88 16 4 C -0.06 -0.56 9.89 -38.93 -0.39 -0.94 16 5 C -0.11 -1.31 9.61 -39.12 -0.38 -1.68 16 6 C 0.10 1.31 6.75 -82.97 -0.56 0.75 16 7 C 0.56 9.51 7.62 -12.26 -0.09 9.42 16 8 O -0.52 -10.81 15.97 5.33 0.09 -10.72 16 9 N -0.70 -11.11 4.92 -55.96 -0.28 -11.39 16 10 C 0.15 2.67 1.98 -69.22 -0.14 2.53 16 11 H 0.11 2.45 4.72 -51.93 -0.25 2.20 16 12 C -0.15 -2.88 5.38 -27.31 -0.15 -3.03 16 13 C 0.18 4.39 4.68 -2.95 -0.01 4.38 16 14 N -0.59 -14.11 1.86 -172.10 -0.32 -14.43 16 15 C -0.26 -6.82 7.63 -15.06 -0.11 -6.94 16 16 H 0.07 1.83 6.43 -52.48 -0.34 1.49 16 17 C 0.01 0.17 4.81 -17.43 -0.08 0.08 16 18 N -0.90 -26.45 11.10 55.49 0.62 -25.83 16 19 Si 0.89 22.30 29.59 -169.99 -5.03 17.27 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.17 3.40 4.70 -4.08 -0.02 3.38 16 24 C -0.09 -1.57 0.72 -156.36 -0.11 -1.69 16 25 C -0.13 -1.87 8.37 37.16 0.31 -1.56 16 26 C -0.13 -2.43 6.76 37.16 0.25 -2.18 16 27 C -0.10 -1.54 3.40 -29.79 -0.10 -1.64 16 28 N -0.46 -5.54 9.51 -9.49 -0.09 -5.63 16 29 C 0.12 1.22 10.92 -17.15 -0.19 1.03 16 30 H 0.23 0.51 7.80 -54.09 -0.42 0.09 16 31 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.16 1.83 7.63 -52.49 -0.40 1.43 16 33 H 0.40 5.41 7.92 -40.82 -0.32 5.08 16 34 H 0.05 1.10 7.85 -51.93 -0.41 0.69 16 35 H 0.05 0.84 7.32 -51.93 -0.38 0.46 16 36 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.08 2.17 6.33 -51.93 -0.33 1.85 16 38 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 40 H 0.05 0.97 7.95 -51.93 -0.41 0.56 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 1.80 4.45 -51.93 -0.23 1.57 16 45 H 0.05 0.89 7.49 -51.93 -0.39 0.50 16 46 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.81 7.36 -51.93 -0.38 0.43 16 48 H 0.05 0.73 8.00 -51.93 -0.42 0.32 16 49 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -31.64 390.13 -8.65 -40.29 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.18 Total: 5.75 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.33 Total: -1.18 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.07 Total: -57.28 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.64 -8.65 -40.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089543744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.835 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds