Wall clock time and date at job start Wed Apr 1 2020 00:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39987 * 120.46213 * 333.91149 * 3 2 1 5 5 C 1.38224 * 118.37045 * 180.25209 * 4 3 2 6 6 C 1.39493 * 119.20409 * 0.02834 * 5 4 3 7 7 C 1.47992 * 119.56914 * 179.97438 * 6 5 4 8 8 O 1.21537 * 119.99603 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99840 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99897 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.48992 * 325.05407 * 10 9 7 12 12 C 1.50882 * 109.48523 * 85.11985 * 10 9 7 13 13 C 1.53926 * 110.08183 * 211.85953 * 12 10 9 14 14 N 1.47609 * 112.15796 * 319.41348 * 13 12 10 15 15 C 1.36932 * 118.63896 * 137.87926 * 14 13 12 16 16 H 1.08007 * 119.99177 * 205.56343 * 15 14 13 17 17 C 1.38806 * 120.00413 * 25.56970 * 15 14 13 18 18 N 1.31617 * 120.00176 * 17.89592 * 17 15 14 19 19 Si 1.86807 * 120.00039 * 197.90052 * 17 15 14 20 20 H 1.48500 * 109.46985 * 89.99654 * 19 17 15 21 21 H 1.48499 * 109.47014 * 209.99624 * 19 17 15 22 22 H 1.48498 * 109.47016 * 329.99828 * 19 17 15 23 23 C 1.44582 * 122.71004 * 317.89962 * 14 13 12 24 24 C 1.54864 * 109.59626 * 90.70531 * 23 14 13 25 25 C 1.53009 * 109.32595 * 168.46675 * 24 23 14 26 26 C 1.52996 * 109.19069 * 48.90499 * 24 23 14 27 27 C 1.47090 * 110.32455 * 288.72764 * 24 23 14 28 28 N 1.32828 * 120.85880 * 359.97438 * 6 5 4 29 29 C 1.31291 * 121.79070 * 0.02562 * 28 6 5 30 30 H 4.52932 * 13.94725 * 359.97438 * 4 2 1 31 31 H 1.08000 * 120.81897 * 0.27961 * 4 3 2 32 32 H 1.07998 * 120.39925 * 180.02562 * 5 4 3 33 33 H 0.96999 * 120.00338 * 0.02562 * 9 7 6 34 34 H 1.09004 * 109.36863 * 332.03907 * 12 10 9 35 35 H 1.08998 * 109.36923 * 91.66370 * 12 10 9 36 36 H 1.09000 * 108.92880 * 198.72892 * 13 12 10 37 37 H 1.08993 * 108.94481 * 80.11227 * 13 12 10 38 38 H 0.97001 * 120.00070 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.45174 * 330.66178 * 23 14 13 40 40 H 1.09001 * 109.42374 * 210.72677 * 23 14 13 41 41 H 1.08997 * 109.47152 * 180.86792 * 25 24 23 42 42 H 1.08997 * 109.47042 * 300.86916 * 25 24 23 43 43 H 1.08998 * 109.46430 * 60.86878 * 25 24 23 44 44 H 1.09005 * 109.47053 * 299.21411 * 26 24 23 45 45 H 1.09002 * 109.47359 * 59.21808 * 26 24 23 46 46 H 1.09001 * 109.47596 * 179.21703 * 26 24 23 47 47 H 1.09005 * 108.51385 * 301.55377 * 27 24 23 48 48 H 1.09003 * 108.39101 * 183.97214 * 27 24 23 49 49 H 1.08003 * 119.65130 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3161 -1.0827 0.5306 5 6 4.6974 -1.0345 0.5133 6 6 5.3326 0.0835 -0.0276 7 6 6.8112 0.1439 -0.0498 8 8 7.4637 -0.7766 0.4018 9 7 7.4339 1.2197 -0.5707 10 6 8.8975 1.2797 -0.5922 11 1 9.2944 0.7961 0.3003 12 6 9.4123 0.5708 -1.8206 13 6 10.7782 -0.0743 -1.5250 14 7 11.6405 0.7989 -0.7047 15 6 12.3643 0.2374 0.3131 16 1 12.6608 0.8383 1.1602 17 6 12.7172 -1.1039 0.2560 18 7 12.6789 -1.7462 -0.8921 19 14 13.2463 -1.9973 1.8089 20 1 12.0562 -2.5945 2.4663 21 1 14.2093 -3.0719 1.4579 22 1 13.8941 -1.0358 2.7368 23 6 11.7519 2.2225 -0.9312 24 6 10.6940 2.9681 -0.0807 25 6 10.9967 4.4679 -0.0970 26 6 10.7541 2.4551 1.3594 27 6 9.3467 2.7374 -0.6240 28 7 4.6277 1.0945 -0.5229 29 6 3.3149 1.0868 -0.5250 30 1 -1.0500 -0.0006 0.0009 31 1 2.7976 -1.9356 0.9431 32 1 5.2779 -1.8524 0.9136 33 1 6.9130 1.9545 -0.9308 34 1 8.7033 -0.2029 -2.1152 35 1 9.5198 1.2886 -2.6338 36 1 11.2820 -0.2836 -2.4687 37 1 10.6188 -1.0132 -0.9950 38 1 12.9252 -2.6836 -0.9319 39 1 11.5852 2.4362 -1.9869 40 1 12.7490 2.5580 -0.6460 41 1 10.2625 4.9933 0.5135 42 1 11.9948 4.6415 0.3051 43 1 10.9484 4.8370 -1.1215 44 1 10.5327 1.3879 1.3745 45 1 11.7517 2.6251 1.7644 46 1 10.0206 2.9869 1.9655 47 1 9.3263 3.0834 -1.6574 48 1 8.6372 3.3309 -0.0474 49 1 2.7763 1.9278 -0.9363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089543744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:28 Heat of formation + Delta-G solvation = 59.531826 kcal Electronic energy + Delta-G solvation = -30180.220005 eV Core-core repulsion = 26301.722249 eV Total energy + Delta-G solvation = -3878.497756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.84891 -40.87698 -39.60870 -36.37597 -35.99547 -35.39457 -33.42530 -33.22265 -32.39153 -31.37373 -28.88634 -28.18758 -27.20120 -26.39708 -25.35635 -24.69128 -23.69347 -22.02792 -21.15680 -20.11671 -19.83778 -18.85644 -18.58638 -17.96107 -17.09460 -16.63658 -16.51373 -16.34550 -16.21493 -15.85846 -15.58261 -15.24308 -15.20828 -14.83544 -14.76312 -14.49280 -14.28473 -13.81564 -13.57307 -13.46659 -13.12010 -13.02168 -12.74744 -12.73975 -12.63131 -12.58652 -12.42354 -12.23389 -11.99028 -11.93315 -11.81185 -11.45628 -11.40638 -11.27690 -11.20361 -11.03975 -10.95958 -10.64053 -10.38402 -10.15202 -9.82405 -8.59240 -7.80990 -5.22636 -0.78618 0.09698 1.40482 1.41711 1.47319 1.51627 1.70382 2.03529 2.21161 2.53587 2.89323 2.96946 3.24671 3.32707 3.66656 3.71092 3.74650 3.79284 3.90942 4.01549 4.11899 4.18723 4.34883 4.44667 4.60698 4.63220 4.71613 4.72619 4.84267 4.87879 4.90380 4.92574 4.99177 5.00502 5.08167 5.09801 5.12999 5.22262 5.30718 5.38293 5.42730 5.48330 5.53620 5.59343 5.69490 5.72611 5.81468 5.86331 6.36219 6.46217 6.51531 6.70147 7.18824 7.23404 8.01106 8.39960 9.24638 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.003028 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.518128 B = 9243.481374 C =10482.735256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.209 4.209 3 C -0.013 4.013 4 C -0.057 4.057 5 C -0.116 4.116 6 C 0.068 3.932 7 C 0.557 3.443 8 O -0.570 6.570 9 N -0.691 5.691 10 C 0.156 3.844 11 H 0.069 0.931 12 C -0.132 4.132 13 C 0.196 3.804 14 N -0.596 5.596 15 C -0.242 4.242 16 H 0.073 0.927 17 C -0.054 4.054 18 N -0.936 5.936 19 Si 0.947 3.053 20 H -0.298 1.298 21 H -0.296 1.296 22 H -0.264 1.264 23 C 0.162 3.838 24 C -0.083 4.083 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.093 4.093 28 N -0.461 5.461 29 C 0.120 3.880 30 H 0.265 0.735 31 H 0.171 0.829 32 H 0.147 0.853 33 H 0.417 0.583 34 H 0.045 0.955 35 H 0.072 0.928 36 H -0.003 1.003 37 H 0.030 0.970 38 H 0.244 0.756 39 H 0.043 0.957 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.047 0.953 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.741 10.762 0.038 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.210 4.210 3 C -0.015 4.015 4 C -0.082 4.082 5 C -0.137 4.137 6 C -0.068 4.068 7 C 0.343 3.657 8 O -0.449 6.449 9 N -0.342 5.342 10 C 0.052 3.948 11 H 0.087 0.913 12 C -0.172 4.172 13 C 0.070 3.930 14 N -0.318 5.318 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.249 4.249 18 N -0.583 5.583 19 Si 0.777 3.223 20 H -0.226 1.226 21 H -0.223 1.223 22 H -0.189 1.189 23 C 0.035 3.965 24 C -0.086 4.086 25 C -0.183 4.183 26 C -0.184 4.184 27 C -0.131 4.131 28 N -0.171 5.171 29 C -0.041 4.041 30 H 0.281 0.719 31 H 0.188 0.812 32 H 0.165 0.835 33 H 0.254 0.746 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.015 0.985 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -23.664 10.697 -0.049 25.969 hybrid contribution 0.052 -1.800 0.853 1.992 sum -23.612 8.897 0.804 25.246 Atomic orbital electron populations 1.25898 0.96409 0.95448 0.94904 1.19756 0.91731 1.04775 1.04749 1.17318 0.89129 0.95813 0.99288 1.21932 0.92388 0.98505 0.95374 1.22133 0.95581 0.98381 0.97556 1.21057 0.93119 0.92953 0.99705 1.18297 0.86801 0.82648 0.77971 1.90857 1.66983 1.38515 1.48531 1.45960 1.07591 1.20604 1.60015 1.20404 0.77657 0.97866 0.98884 0.91287 1.22241 0.97420 0.99645 0.97894 1.20568 0.87200 0.92430 0.92772 1.43775 1.48273 1.03194 1.36516 1.19536 1.26349 0.93692 0.97702 0.90961 1.25632 1.01172 0.99724 0.98323 1.70221 1.54213 1.09614 1.24242 0.85546 0.77013 0.78728 0.81004 1.22574 1.22304 1.18878 1.20953 0.96158 0.82927 0.96413 1.20327 0.95779 0.96554 0.95979 1.21724 1.01581 0.92698 1.02321 1.21844 0.99954 1.00811 0.95772 1.20554 0.97123 0.92946 1.02492 1.67521 1.09292 1.25924 1.14397 1.23434 0.88293 0.97639 0.94717 0.71893 0.81179 0.83524 0.74557 0.93623 0.90954 0.98538 0.95147 0.94715 0.93852 0.94312 0.91748 0.92895 0.91577 0.93787 0.94189 0.93354 0.90525 0.90643 0.78730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 19.25 74.32 1.43 0.56 16 2 C -0.21 -2.88 13.28 30.02 0.40 -2.48 16 3 C -0.01 -0.23 5.75 -21.20 -0.12 -0.35 16 4 C -0.06 -1.02 9.89 22.69 0.22 -0.80 16 5 C -0.12 -2.82 9.61 22.57 0.22 -2.60 16 6 C 0.07 1.91 6.75 41.88 0.28 2.19 16 7 C 0.56 19.79 7.62 86.83 0.66 20.46 16 8 O -0.57 -25.76 15.97 -3.83 -0.06 -25.82 16 9 N -0.69 -21.83 4.92 -449.26 -2.21 -24.04 16 10 C 0.16 5.68 1.98 44.16 0.09 5.77 16 11 H 0.07 3.20 4.72 -2.39 -0.01 3.19 16 12 C -0.13 -5.32 5.38 30.22 0.16 -5.15 16 13 C 0.20 10.06 4.68 86.48 0.40 10.47 16 14 N -0.60 -29.69 1.86 -698.41 -1.30 -30.99 16 15 C -0.24 -13.42 7.63 84.03 0.64 -12.78 16 16 H 0.07 3.90 6.43 -2.91 -0.02 3.88 16 17 C -0.05 -3.16 4.81 84.86 0.41 -2.75 16 18 N -0.94 -58.33 11.10 21.65 0.24 -58.09 16 19 Si 0.95 48.07 29.59 68.60 2.03 50.10 16 20 H -0.30 -15.50 7.11 99.48 0.71 -14.80 16 21 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 22 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 23 C 0.16 6.46 4.70 87.37 0.41 6.87 16 24 C -0.08 -2.66 0.72 -53.38 -0.04 -2.70 16 25 C -0.13 -3.03 8.37 71.99 0.60 -2.43 16 26 C -0.13 -4.61 6.76 71.98 0.49 -4.12 16 27 C -0.09 -2.73 3.40 28.61 0.10 -2.63 16 28 N -0.46 -10.71 9.51 -183.93 -1.75 -12.46 16 29 C 0.12 2.12 10.92 85.18 0.93 3.05 16 30 H 0.27 -0.36 7.80 -4.42 -0.03 -0.40 16 31 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.15 3.75 7.63 -2.91 -0.02 3.73 16 33 H 0.42 10.59 7.92 -92.71 -0.73 9.86 16 34 H 0.05 1.90 7.85 -2.39 -0.02 1.88 16 35 H 0.07 2.53 7.32 -2.39 -0.02 2.51 16 36 H 0.00 -0.19 8.05 -2.39 -0.02 -0.21 16 37 H 0.03 1.83 6.33 -2.39 -0.02 1.81 16 38 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 40 H 0.04 1.59 7.95 -2.39 -0.02 1.57 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.04 1.96 4.45 -2.38 -0.01 1.95 16 45 H 0.04 1.47 7.49 -2.39 -0.02 1.45 16 46 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.08 1.97 7.36 -2.38 -0.02 1.95 16 48 H 0.08 1.89 8.00 -2.39 -0.02 1.87 16 49 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -75.72 390.13 4.47 -71.25 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.23 Total: 19.47 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 7.29 Total: 10.58 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -5.02 Total: -125.57 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.06 Total: -25.82 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -75.72 4.47 -71.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089543744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.778 kcal (2) G-P(sol) polarization free energy of solvation -75.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds