Wall clock time and date at job start Wed Apr 1 2020 00:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39638 * 120.49028 * 283.56947 * 3 2 1 5 5 N 1.31753 * 120.88478 * 179.97438 * 4 3 2 6 6 C 1.31729 * 122.03761 * 0.02562 * 5 4 3 7 7 C 1.39606 * 120.88044 * 359.97438 * 6 5 4 8 8 C 1.47860 * 120.49028 * 180.02562 * 7 6 5 9 9 O 1.21552 * 119.99683 * 179.97438 * 8 7 6 10 10 N 1.34770 * 120.00098 * 359.97438 * 8 7 6 11 11 C 1.46507 * 119.99831 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47083 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.58900 * 59.76592 * 12 11 10 14 14 C 1.53190 * 109.58774 * 180.02562 * 12 11 10 15 15 C 1.53041 * 109.31425 * 174.42310 * 14 12 11 16 16 C 1.53044 * 109.53544 * 298.62968 * 15 14 12 17 17 C 1.53007 * 109.49664 * 181.31650 * 16 15 14 18 18 C 1.52993 * 109.50204 * 301.41381 * 16 15 14 19 19 C 1.53195 * 109.31105 * 61.37181 * 16 15 14 20 20 N 1.46925 * 109.58828 * 299.34068 * 12 11 10 21 21 C 1.36942 * 120.63023 * 6.62731 * 20 12 11 22 22 H 1.08003 * 119.99737 * 328.83673 * 21 20 12 23 23 C 1.38810 * 120.00371 * 148.83934 * 21 20 12 24 24 N 1.31618 * 120.00161 * 162.47331 * 23 21 20 25 25 Si 1.86803 * 119.99571 * 342.47075 * 23 21 20 26 26 H 1.48498 * 109.47125 * 90.00883 * 25 23 21 27 27 H 1.48506 * 109.46815 * 210.00341 * 25 23 21 28 28 H 1.48497 * 109.47474 * 330.00020 * 25 23 21 29 29 C 1.39676 * 120.49330 * 103.55040 * 3 2 1 30 30 H 4.52732 * 13.93023 * 359.97438 * 4 2 1 31 31 H 1.08002 * 119.55546 * 359.69974 * 4 3 2 32 32 H 1.08002 * 119.56624 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00227 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.47028 * 299.99630 * 11 10 8 35 35 H 1.08995 * 109.46988 * 59.99478 * 11 10 8 36 36 H 1.09000 * 109.50081 * 294.37113 * 14 12 11 37 37 H 1.08992 * 109.50158 * 54.43569 * 14 12 11 38 38 H 1.08998 * 109.46124 * 58.65222 * 15 14 12 39 39 H 1.09006 * 109.46020 * 178.62769 * 15 14 12 40 40 H 1.08997 * 109.46686 * 60.00482 * 17 16 15 41 41 H 1.09000 * 109.46884 * 180.02562 * 17 16 15 42 42 H 1.08995 * 109.47097 * 300.00403 * 17 16 15 43 43 H 1.09008 * 109.46884 * 59.99884 * 18 16 15 44 44 H 1.08997 * 109.47206 * 179.97438 * 18 16 15 45 45 H 1.09000 * 109.47677 * 300.00343 * 18 16 15 46 46 H 1.08998 * 109.58927 * 65.14650 * 19 16 15 47 47 H 1.08993 * 109.58730 * 185.43721 * 19 16 15 48 48 H 0.97005 * 119.99881 * 180.02562 * 24 23 21 49 49 H 1.08000 * 120.91582 * 0.04049 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3146 -0.2814 1.1697 5 7 4.6321 -0.2834 1.1784 6 6 5.3384 -0.0222 0.0976 7 6 4.7113 0.2701 -1.1149 8 6 5.5126 0.5614 -2.3229 9 8 4.9573 0.8144 -3.3742 10 7 6.8587 0.5465 -2.2585 11 6 7.6526 0.8357 -3.4553 12 6 9.1412 0.7541 -3.1118 13 1 9.3782 -0.2459 -2.7486 14 6 9.9740 1.0567 -4.3614 15 6 11.4555 1.1107 -3.9816 16 6 11.6829 2.2331 -2.9662 17 6 13.1695 2.3076 -2.6119 18 6 11.2335 3.5656 -3.5687 19 6 10.8696 1.9437 -1.7007 20 7 9.4630 1.7460 -2.0768 21 6 8.4709 2.4727 -1.4744 22 1 7.5758 2.7240 -2.0241 23 6 8.6156 2.8865 -0.1573 24 7 7.8571 3.8522 0.3163 25 14 9.8869 2.0723 0.9430 26 1 11.1759 2.8014 0.8334 27 1 9.4171 2.1066 2.3514 28 1 10.0780 0.6620 0.5191 29 6 3.3146 0.2830 -1.1701 30 1 -1.0500 0.0004 0.0004 31 1 2.7754 -0.4964 2.0805 32 1 6.4171 -0.0344 0.1501 33 1 7.3019 0.3449 -1.4195 34 1 7.4181 0.1073 -4.2316 35 1 7.4172 1.8376 -3.8141 36 1 9.8168 0.2726 -5.1021 37 1 9.6695 2.0168 -4.7779 38 1 11.7529 0.1583 -3.5428 39 1 12.0524 1.3018 -4.8735 40 1 13.7480 2.5106 -3.5131 41 1 13.3309 3.1068 -1.8884 42 1 13.4885 1.3584 -2.1815 43 1 10.1740 3.5120 -3.8195 44 1 11.3952 4.3645 -2.8450 45 1 11.8104 3.7697 -4.4707 46 1 11.2492 1.0418 -1.2205 47 1 10.9514 2.7857 -1.0134 48 1 7.9585 4.1416 1.2366 49 1 2.7977 0.5055 -2.0918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089691329.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:13 Heat of formation + Delta-G solvation = 75.109923 kcal Electronic energy + Delta-G solvation = -30513.345553 eV Core-core repulsion = 26635.523314 eV Total energy + Delta-G solvation = -3877.822239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.43868 -39.27647 -38.36890 -35.30152 -34.39486 -33.27064 -32.55511 -31.98832 -30.79188 -30.52561 -27.72752 -26.79677 -25.56702 -24.80787 -24.10032 -23.05134 -22.57751 -20.66798 -20.10784 -18.86063 -18.42037 -17.34668 -16.77772 -16.57436 -16.13924 -15.61970 -15.06023 -15.01641 -14.80900 -14.45165 -14.15862 -13.87234 -13.62367 -13.60579 -13.40611 -13.10356 -12.91286 -12.63803 -12.46603 -12.33465 -11.93761 -11.69837 -11.63759 -11.58396 -11.47444 -11.10967 -11.00714 -10.89339 -10.67775 -10.58353 -10.37743 -10.01537 -9.96328 -9.83881 -9.66909 -9.52960 -9.48089 -9.22383 -8.81861 -8.71805 -8.34133 -6.97262 -6.01970 -3.43749 0.60438 1.02734 2.56660 2.81563 3.25246 3.38500 3.40358 3.44342 3.63005 4.08133 4.10330 4.42261 4.43909 4.74180 4.80635 4.93498 5.08334 5.10905 5.21064 5.26272 5.28781 5.38716 5.47620 5.53664 5.66465 5.79877 5.82425 5.90357 5.97616 6.00593 6.03769 6.07172 6.11256 6.19313 6.24704 6.27310 6.31436 6.33970 6.45683 6.50290 6.54725 6.62082 6.70233 6.80460 6.84820 7.01000 7.07890 7.35324 7.87952 7.89270 8.07913 8.29000 8.68524 8.85293 9.62810 10.01777 11.12116 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015812 B = 0.003502 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.399142 B = 7994.272370 C = 9059.561019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.140 4.140 3 C -0.058 4.058 4 C 0.142 3.858 5 N -0.482 5.482 6 C 0.155 3.845 7 C -0.169 4.169 8 C 0.560 3.440 9 O -0.555 6.555 10 N -0.684 5.684 11 C 0.135 3.865 12 C 0.163 3.837 13 H 0.037 0.963 14 C -0.131 4.131 15 C -0.096 4.096 16 C -0.085 4.085 17 C -0.139 4.139 18 C -0.127 4.127 19 C 0.138 3.862 20 N -0.601 5.601 21 C -0.266 4.266 22 H 0.093 0.907 23 C 0.033 3.967 24 N -0.899 5.899 25 Si 0.873 3.127 26 H -0.288 1.288 27 H -0.303 1.303 28 H -0.270 1.270 29 C 0.003 3.997 30 H 0.226 0.774 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.410 0.590 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.036 0.964 46 H 0.023 0.977 47 H 0.073 0.927 48 H 0.263 0.737 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.340 -8.599 -3.530 9.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C -0.061 4.061 4 C -0.016 4.016 5 N -0.189 5.189 6 C -0.002 4.002 7 C -0.175 4.175 8 C 0.346 3.654 9 O -0.435 6.435 10 N -0.334 5.334 11 C 0.012 3.988 12 C 0.056 3.944 13 H 0.055 0.945 14 C -0.171 4.171 15 C -0.134 4.134 16 C -0.087 4.087 17 C -0.197 4.197 18 C -0.184 4.184 19 C 0.013 3.987 20 N -0.326 5.326 21 C -0.394 4.394 22 H 0.110 0.890 23 C -0.167 4.167 24 N -0.541 5.541 25 Si 0.703 3.297 26 H -0.215 1.215 27 H -0.231 1.231 28 H -0.195 1.195 29 C -0.023 4.023 30 H 0.242 0.758 31 H 0.179 0.821 32 H 0.183 0.817 33 H 0.248 0.752 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.041 0.959 47 H 0.091 0.909 48 H 0.073 0.927 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.303 -8.501 -3.348 9.422 hybrid contribution 0.488 -0.012 0.512 0.708 sum -1.815 -8.513 -2.836 9.154 Atomic orbital electron populations 1.24838 0.95639 0.99617 0.98908 1.19656 0.91486 1.01287 1.01680 1.16830 0.88003 1.05899 0.95334 1.23087 0.89829 0.92109 0.96570 1.67729 1.07397 1.14168 1.29645 1.23207 1.00813 0.89520 0.86705 1.20992 0.94549 1.05688 0.96223 1.17810 0.82588 0.77857 0.87166 1.90723 1.71657 1.50586 1.30580 1.45840 1.04833 1.68355 1.14377 1.21322 0.89881 1.01248 0.86390 1.20748 0.91479 0.92488 0.89642 0.94543 1.21999 0.95579 1.01798 0.97689 1.21419 0.95989 0.98014 0.97974 1.21046 0.94412 0.95811 0.97440 1.21827 0.95920 1.01191 1.00762 1.21720 1.02136 0.95689 0.98870 1.21436 0.84350 0.98746 0.94158 1.44366 1.01552 1.42635 1.43998 1.18956 0.99501 1.27355 0.93638 0.88980 1.25321 0.96937 0.97741 0.96739 1.69804 1.41060 1.27077 1.16127 0.87121 0.81430 0.80917 0.80190 1.21517 1.23150 1.19497 1.21742 0.92518 0.90225 0.97832 0.75759 0.82098 0.81734 0.75190 0.92136 0.90896 0.92593 0.91126 0.92784 0.92988 0.93219 0.92965 0.93263 0.91071 0.93398 0.94517 0.95914 0.90941 0.92684 0.83300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 19.25 29.55 0.57 -1.14 16 2 C -0.14 -1.77 13.27 -38.84 -0.52 -2.29 16 3 C -0.06 -0.83 5.73 -106.91 -0.61 -1.45 16 4 C 0.14 1.98 10.91 -17.06 -0.19 1.80 16 5 N -0.48 -7.82 10.33 -12.59 -0.13 -7.95 16 6 C 0.16 2.59 10.71 -17.09 -0.18 2.41 16 7 C -0.17 -2.89 5.88 -104.87 -0.62 -3.51 16 8 C 0.56 10.57 7.78 -12.33 -0.10 10.47 16 9 O -0.56 -11.73 16.41 5.32 0.09 -11.64 16 10 N -0.68 -12.39 3.82 -61.25 -0.23 -12.62 16 11 C 0.14 2.35 4.43 -4.04 -0.02 2.33 16 12 C 0.16 2.76 3.00 -67.61 -0.20 2.55 16 13 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 14 C -0.13 -1.92 5.03 -26.61 -0.13 -2.05 16 15 C -0.10 -1.37 4.71 -26.69 -0.13 -1.49 16 16 C -0.09 -1.38 0.77 -154.38 -0.12 -1.49 16 17 C -0.14 -1.96 8.48 37.16 0.32 -1.64 16 18 C -0.13 -2.11 7.99 37.15 0.30 -1.81 16 19 C 0.14 2.72 2.87 -3.70 -0.01 2.71 16 20 N -0.60 -12.18 2.15 -164.77 -0.35 -12.53 16 21 C -0.27 -6.38 7.45 -15.06 -0.11 -6.49 16 22 H 0.09 2.46 6.05 -52.48 -0.32 2.14 16 23 C 0.03 0.85 5.26 -17.43 -0.09 0.76 16 24 N -0.90 -25.59 13.97 55.49 0.78 -24.81 16 25 Si 0.87 20.55 24.34 -169.99 -4.14 16.41 16 26 H -0.29 -6.75 6.57 56.52 0.37 -6.38 16 27 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.27 -6.08 6.72 56.52 0.38 -5.70 16 29 C 0.00 0.05 9.44 -38.47 -0.36 -0.32 16 30 H 0.23 1.25 7.80 -54.09 -0.42 0.83 16 31 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.17 2.69 6.41 -52.49 -0.34 2.35 16 33 H 0.41 7.44 5.48 -40.82 -0.22 7.21 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.43 7.39 -51.93 -0.38 1.05 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.10 6.34 -51.93 -0.33 0.77 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.31 5.97 -51.92 -0.31 1.00 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.45 7.03 -51.93 -0.37 0.09 16 47 H 0.07 1.61 4.73 -51.93 -0.25 1.37 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.15 2.25 7.73 -52.49 -0.41 1.84 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -29.85 387.10 -7.54 -37.40 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.18 Total: 10.58 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.21 Total: -0.66 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.06 Total: -57.92 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.14 Total: 16.41 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.85 -7.54 -37.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089691329.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.508 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds