Wall clock time and date at job start Wed Apr 1 2020 00:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39638 * 120.49028 * 283.56947 * 3 2 1 5 5 N 1.31753 * 120.88478 * 179.97438 * 4 3 2 6 6 C 1.31729 * 122.03761 * 0.02562 * 5 4 3 7 7 C 1.39606 * 120.88044 * 359.97438 * 6 5 4 8 8 C 1.47860 * 120.49028 * 180.02562 * 7 6 5 9 9 O 1.21552 * 119.99683 * 179.97438 * 8 7 6 10 10 N 1.34770 * 120.00098 * 359.97438 * 8 7 6 11 11 C 1.46507 * 119.99831 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47083 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.58900 * 59.76592 * 12 11 10 14 14 C 1.53190 * 109.58774 * 180.02562 * 12 11 10 15 15 C 1.53041 * 109.31425 * 174.42310 * 14 12 11 16 16 C 1.53044 * 109.53544 * 298.62968 * 15 14 12 17 17 C 1.53007 * 109.49664 * 181.31650 * 16 15 14 18 18 C 1.52993 * 109.50204 * 301.41381 * 16 15 14 19 19 C 1.53195 * 109.31105 * 61.37181 * 16 15 14 20 20 N 1.46925 * 109.58828 * 299.34068 * 12 11 10 21 21 C 1.36942 * 120.63023 * 6.62731 * 20 12 11 22 22 H 1.08003 * 119.99737 * 328.83673 * 21 20 12 23 23 C 1.38810 * 120.00371 * 148.83934 * 21 20 12 24 24 N 1.31618 * 120.00161 * 162.47331 * 23 21 20 25 25 Si 1.86803 * 119.99571 * 342.47075 * 23 21 20 26 26 H 1.48498 * 109.47125 * 90.00883 * 25 23 21 27 27 H 1.48506 * 109.46815 * 210.00341 * 25 23 21 28 28 H 1.48497 * 109.47474 * 330.00020 * 25 23 21 29 29 C 1.39676 * 120.49330 * 103.55040 * 3 2 1 30 30 H 4.52732 * 13.93023 * 359.97438 * 4 2 1 31 31 H 1.08002 * 119.55546 * 359.69974 * 4 3 2 32 32 H 1.08002 * 119.56624 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00227 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.47028 * 299.99630 * 11 10 8 35 35 H 1.08995 * 109.46988 * 59.99478 * 11 10 8 36 36 H 1.09000 * 109.50081 * 294.37113 * 14 12 11 37 37 H 1.08992 * 109.50158 * 54.43569 * 14 12 11 38 38 H 1.08998 * 109.46124 * 58.65222 * 15 14 12 39 39 H 1.09006 * 109.46020 * 178.62769 * 15 14 12 40 40 H 1.08997 * 109.46686 * 60.00482 * 17 16 15 41 41 H 1.09000 * 109.46884 * 180.02562 * 17 16 15 42 42 H 1.08995 * 109.47097 * 300.00403 * 17 16 15 43 43 H 1.09008 * 109.46884 * 59.99884 * 18 16 15 44 44 H 1.08997 * 109.47206 * 179.97438 * 18 16 15 45 45 H 1.09000 * 109.47677 * 300.00343 * 18 16 15 46 46 H 1.08998 * 109.58927 * 65.14650 * 19 16 15 47 47 H 1.08993 * 109.58730 * 185.43721 * 19 16 15 48 48 H 0.97005 * 119.99881 * 180.02562 * 24 23 21 49 49 H 1.08000 * 120.91582 * 0.04049 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3146 -0.2814 1.1697 5 7 4.6321 -0.2834 1.1784 6 6 5.3384 -0.0222 0.0976 7 6 4.7113 0.2701 -1.1149 8 6 5.5126 0.5614 -2.3229 9 8 4.9573 0.8144 -3.3742 10 7 6.8587 0.5465 -2.2585 11 6 7.6526 0.8357 -3.4553 12 6 9.1412 0.7541 -3.1118 13 1 9.3782 -0.2459 -2.7486 14 6 9.9740 1.0567 -4.3614 15 6 11.4555 1.1107 -3.9816 16 6 11.6829 2.2331 -2.9662 17 6 13.1695 2.3076 -2.6119 18 6 11.2335 3.5656 -3.5687 19 6 10.8696 1.9437 -1.7007 20 7 9.4630 1.7460 -2.0768 21 6 8.4709 2.4727 -1.4744 22 1 7.5758 2.7240 -2.0241 23 6 8.6156 2.8865 -0.1573 24 7 7.8571 3.8522 0.3163 25 14 9.8869 2.0723 0.9430 26 1 11.1759 2.8014 0.8334 27 1 9.4171 2.1066 2.3514 28 1 10.0780 0.6620 0.5191 29 6 3.3146 0.2830 -1.1701 30 1 -1.0500 0.0004 0.0004 31 1 2.7754 -0.4964 2.0805 32 1 6.4171 -0.0344 0.1501 33 1 7.3019 0.3449 -1.4195 34 1 7.4181 0.1073 -4.2316 35 1 7.4172 1.8376 -3.8141 36 1 9.8168 0.2726 -5.1021 37 1 9.6695 2.0168 -4.7779 38 1 11.7529 0.1583 -3.5428 39 1 12.0524 1.3018 -4.8735 40 1 13.7480 2.5106 -3.5131 41 1 13.3309 3.1068 -1.8884 42 1 13.4885 1.3584 -2.1815 43 1 10.1740 3.5120 -3.8195 44 1 11.3952 4.3645 -2.8450 45 1 11.8104 3.7697 -4.4707 46 1 11.2492 1.0418 -1.2205 47 1 10.9514 2.7857 -1.0134 48 1 7.9585 4.1416 1.2366 49 1 2.7977 0.5055 -2.0918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089691329.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:12 Heat of formation + Delta-G solvation = 57.383745 kcal Electronic energy + Delta-G solvation = -30514.114218 eV Core-core repulsion = 26635.523314 eV Total energy + Delta-G solvation = -3878.590904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.74198 -40.67358 -39.79863 -36.76426 -35.43847 -34.97275 -33.99842 -33.26580 -32.49125 -31.60713 -29.03982 -28.08929 -27.27664 -26.11247 -25.32615 -24.56615 -23.89575 -22.01308 -21.59727 -20.07513 -19.88360 -18.60623 -18.18607 -17.95190 -17.53024 -17.14292 -16.67479 -16.47048 -15.92940 -15.88258 -15.54549 -15.31329 -15.00524 -14.95844 -14.80526 -14.49998 -14.30279 -14.12214 -13.99489 -13.64016 -13.36489 -13.09844 -12.89911 -12.81774 -12.74789 -12.68230 -12.41309 -12.20168 -12.11668 -11.84209 -11.81008 -11.56673 -11.38140 -11.35395 -11.05910 -10.99083 -10.93732 -10.57312 -10.54788 -10.00695 -9.81041 -8.73151 -8.05657 -5.41017 -0.58995 -0.19474 1.34190 1.44523 1.52128 1.62088 1.68123 2.12787 2.28617 2.48031 2.88299 3.07621 3.13692 3.29624 3.35277 3.65788 3.68740 3.78536 3.88357 3.93363 4.06465 4.10441 4.24349 4.33735 4.36698 4.45580 4.56364 4.70189 4.71990 4.81420 4.83261 4.85501 4.88245 4.96063 4.98274 5.02819 5.04126 5.10507 5.12454 5.20177 5.28850 5.39480 5.44996 5.45428 5.53866 5.57883 5.75676 5.98574 6.29337 6.49173 6.56231 6.68531 6.99588 7.17930 7.71579 8.13140 9.12682 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015812 B = 0.003502 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.399142 B = 7994.272370 C = 9059.561019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.207 4.207 3 C -0.046 4.046 4 C 0.143 3.857 5 N -0.497 5.497 6 C 0.144 3.856 7 C -0.184 4.184 8 C 0.558 3.442 9 O -0.584 6.584 10 N -0.684 5.684 11 C 0.137 3.863 12 C 0.162 3.838 13 H 0.055 0.945 14 C -0.126 4.126 15 C -0.091 4.091 16 C -0.084 4.084 17 C -0.135 4.135 18 C -0.122 4.122 19 C 0.134 3.866 20 N -0.610 5.610 21 C -0.223 4.223 22 H 0.060 0.940 23 C -0.019 4.019 24 N -0.953 5.953 25 Si 0.926 3.074 26 H -0.288 1.288 27 H -0.323 1.323 28 H -0.250 1.250 29 C -0.008 4.008 30 H 0.270 0.730 31 H 0.195 0.805 32 H 0.161 0.839 33 H 0.409 0.591 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.026 0.974 45 H 0.064 0.936 46 H 0.029 0.971 47 H 0.041 0.959 48 H 0.255 0.745 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.051 -10.869 -4.532 11.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.208 4.208 3 C -0.048 4.048 4 C -0.015 4.015 5 N -0.205 5.205 6 C -0.013 4.013 7 C -0.189 4.189 8 C 0.345 3.655 9 O -0.467 6.467 10 N -0.332 5.332 11 C 0.014 3.986 12 C 0.057 3.943 13 H 0.072 0.928 14 C -0.165 4.165 15 C -0.128 4.128 16 C -0.086 4.086 17 C -0.193 4.193 18 C -0.179 4.179 19 C 0.009 3.991 20 N -0.335 5.335 21 C -0.353 4.353 22 H 0.077 0.923 23 C -0.214 4.214 24 N -0.599 5.599 25 Si 0.756 3.244 26 H -0.216 1.216 27 H -0.253 1.253 28 H -0.174 1.174 29 C -0.034 4.034 30 H 0.285 0.715 31 H 0.212 0.788 32 H 0.178 0.822 33 H 0.247 0.753 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.083 0.917 46 H 0.047 0.953 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.961 -10.816 -4.389 11.837 hybrid contribution 0.203 0.694 0.742 1.036 sum -1.758 -10.123 -3.648 10.903 Atomic orbital electron populations 1.25877 0.96282 0.95530 0.95431 1.19732 0.91637 1.04526 1.04891 1.16941 0.89400 1.03959 0.94512 1.23637 0.89150 0.90880 0.97802 1.67743 1.08642 1.14736 1.29337 1.23123 1.00811 0.90459 0.86915 1.20878 0.95116 1.07305 0.95638 1.18110 0.82824 0.77164 0.87416 1.90686 1.72139 1.52097 1.31732 1.45870 1.04855 1.67924 1.14595 1.21367 0.90370 1.00211 0.86671 1.20972 0.91392 0.92145 0.89816 0.92775 1.21961 0.95565 1.02275 0.96748 1.21412 0.95655 0.97477 0.98305 1.21017 0.95220 0.96215 0.96116 1.21793 0.94317 1.01488 1.01715 1.21659 1.01030 0.95672 0.99523 1.21455 0.84256 0.97679 0.95682 1.44461 1.01356 1.43327 1.44386 1.18698 0.98765 1.25085 0.92727 0.92288 1.25748 0.98891 0.98671 0.98126 1.69945 1.44201 1.29806 1.15953 0.86257 0.79381 0.81085 0.77641 1.21556 1.25255 1.17394 1.21845 0.92060 0.90761 0.98712 0.71455 0.78819 0.82182 0.75284 0.89876 0.93881 0.89456 0.92378 0.91555 0.90344 0.90798 0.94106 0.92132 0.93556 0.95493 0.91742 0.95315 0.94074 0.93583 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 19.25 74.32 1.43 -0.43 16 2 C -0.21 -4.88 13.27 30.01 0.40 -4.49 16 3 C -0.05 -1.31 5.73 -21.35 -0.12 -1.43 16 4 C 0.14 3.94 10.91 85.04 0.93 4.87 16 5 N -0.50 -16.42 10.33 -193.75 -2.00 -18.42 16 6 C 0.14 5.05 10.71 85.04 0.91 5.96 16 7 C -0.18 -6.62 5.88 -20.03 -0.12 -6.74 16 8 C 0.56 22.12 7.78 86.79 0.68 22.80 16 9 O -0.58 -25.76 16.41 -3.88 -0.06 -25.83 16 10 N -0.68 -25.65 3.82 -465.97 -1.78 -27.43 16 11 C 0.14 4.80 4.43 86.37 0.38 5.18 16 12 C 0.16 5.26 3.00 44.97 0.14 5.40 16 13 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 14 C -0.13 -3.33 5.03 30.67 0.15 -3.18 16 15 C -0.09 -2.21 4.71 30.62 0.14 -2.07 16 16 C -0.08 -2.52 0.77 -52.10 -0.04 -2.56 16 17 C -0.14 -3.39 8.48 71.98 0.61 -2.78 16 18 C -0.12 -3.92 7.99 71.98 0.57 -3.35 16 19 C 0.13 5.13 2.87 86.36 0.25 5.38 16 20 N -0.61 -24.69 2.15 -675.22 -1.45 -26.15 16 21 C -0.22 -11.10 7.45 84.03 0.63 -10.48 16 22 H 0.06 3.35 6.05 -2.91 -0.02 3.33 16 23 C -0.02 -1.03 5.26 84.86 0.45 -0.58 16 24 N -0.95 -57.41 13.97 21.65 0.30 -57.11 16 25 Si 0.93 43.85 24.34 68.60 1.67 45.52 16 26 H -0.29 -13.50 6.57 99.48 0.65 -12.84 16 27 H -0.32 -16.22 7.11 99.48 0.71 -15.51 16 28 H -0.25 -10.84 6.72 99.48 0.67 -10.17 16 29 C -0.01 -0.25 9.44 22.99 0.22 -0.03 16 30 H 0.27 1.51 7.80 -4.42 -0.03 1.47 16 31 H 0.20 3.88 8.06 -2.91 -0.02 3.85 16 32 H 0.16 5.56 6.41 -2.91 -0.02 5.54 16 33 H 0.41 15.38 5.48 -92.71 -0.51 14.87 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.04 1.77 7.39 -2.39 -0.02 1.75 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.71 6.34 -2.39 -0.02 1.69 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.57 8.14 -2.38 -0.02 1.56 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 1.71 5.97 -2.38 -0.01 1.69 16 44 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.03 1.08 7.03 -2.39 -0.02 1.06 16 47 H 0.04 1.84 4.73 -2.39 -0.01 1.83 16 48 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 49 H 0.15 4.70 7.73 -2.91 -0.02 4.68 16 Total: -1.00 -69.53 387.10 4.64 -64.89 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.36 Total: 33.04 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 7.60 Total: 11.48 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -4.93 Total: -129.11 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.06 Total: -25.83 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.67 Total: 45.52 kcal Total: -69.53 4.64 -64.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089691329.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.277 kcal (2) G-P(sol) polarization free energy of solvation -69.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds