Wall clock time and date at job start Wed Apr 1 2020 00:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39982 * 120.46144 * 142.02498 * 3 2 1 5 5 C 1.38221 * 118.37163 * 180.02562 * 4 3 2 6 6 C 1.39488 * 119.20336 * 359.97438 * 5 4 3 7 7 C 1.47998 * 119.56753 * 179.97438 * 6 5 4 8 8 O 1.21538 * 119.99839 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99738 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99890 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.46914 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.59142 * 299.77762 * 11 10 9 13 13 C 1.53193 * 109.70074 * 179.42245 * 11 10 9 14 14 C 1.53042 * 109.31693 * 185.50795 * 13 11 10 15 15 C 1.53037 * 109.53514 * 61.36201 * 14 13 11 16 16 C 1.53001 * 109.49892 * 178.68638 * 15 14 13 17 17 C 1.53005 * 109.49390 * 58.59318 * 15 14 13 18 18 C 1.53195 * 109.31804 * 298.63939 * 15 14 13 19 19 N 1.46925 * 109.58785 * 60.06641 * 11 10 9 20 20 C 1.36936 * 120.63162 * 353.55574 * 19 11 10 21 21 H 1.08001 * 119.99804 * 49.29570 * 20 19 11 22 22 C 1.38809 * 120.00240 * 229.29204 * 20 19 11 23 23 N 1.31614 * 120.00238 * 188.70348 * 22 20 19 24 24 Si 1.86804 * 119.99911 * 8.70546 * 22 20 19 25 25 H 1.48499 * 109.47080 * 84.53013 * 24 22 20 26 26 H 1.48496 * 109.47108 * 204.53435 * 24 22 20 27 27 H 1.48502 * 109.47054 * 324.53161 * 24 22 20 28 28 N 1.32819 * 120.86430 * 0.25554 * 6 5 4 29 29 C 1.31304 * 121.78652 * 359.47495 * 28 6 5 30 30 H 4.52931 * 13.94544 * 359.97438 * 4 2 1 31 31 H 1.08010 * 120.81891 * 0.03635 * 4 3 2 32 32 H 1.08004 * 120.39799 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00502 * 359.97438 * 9 7 6 34 34 H 1.08995 * 109.46996 * 59.99638 * 10 9 7 35 35 H 1.09000 * 109.46543 * 299.99473 * 10 9 7 36 36 H 1.09003 * 109.50170 * 305.45983 * 13 11 10 37 37 H 1.09008 * 109.49584 * 65.55867 * 13 11 10 38 38 H 1.09002 * 109.45666 * 301.34871 * 14 13 11 39 39 H 1.08999 * 109.46487 * 181.38950 * 14 13 11 40 40 H 1.09000 * 109.47307 * 179.84280 * 16 15 14 41 41 H 1.09006 * 109.47139 * 299.84137 * 16 15 14 42 42 H 1.09002 * 109.47119 * 59.84261 * 16 15 14 43 43 H 1.08997 * 109.46932 * 300.15572 * 17 15 14 44 44 H 1.09001 * 109.47009 * 60.16213 * 17 15 14 45 45 H 1.09003 * 109.47068 * 180.15669 * 17 15 14 46 46 H 1.08997 * 109.58623 * 294.84707 * 18 15 14 47 47 H 1.08996 * 109.70092 * 174.49221 * 18 15 14 48 48 H 0.97007 * 120.00378 * 180.02562 * 23 22 20 49 49 H 1.07997 * 119.65204 * 180.28702 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3152 0.9521 -0.7424 5 6 4.6965 0.9127 -0.7119 6 6 5.3327 -0.0658 0.0521 7 6 6.8113 -0.1158 0.0902 8 8 7.4631 0.6921 -0.5420 9 7 7.4350 -1.0578 0.8251 10 6 8.8987 -1.1076 0.8624 11 6 9.3469 -2.2605 1.7629 12 1 8.9672 -2.1044 2.7726 13 6 10.8771 -2.3265 1.7942 14 6 11.3144 -3.5623 2.5838 15 6 10.7906 -4.8231 1.8924 16 6 11.2558 -6.0596 2.6643 17 6 11.3284 -4.8815 0.4612 18 6 9.2594 -4.7855 1.8622 19 7 8.8296 -3.5294 1.2327 20 6 7.9638 -3.5411 0.1719 21 1 8.1923 -2.9733 -0.7179 22 6 6.7924 -4.2828 0.2402 23 7 6.0459 -4.4344 -0.8331 24 14 6.2756 -5.0658 1.8556 25 1 5.5370 -4.0708 2.6739 26 1 5.3974 -6.2315 1.5820 27 1 7.4816 -5.5174 2.5950 28 7 4.6288 -0.9566 0.7414 29 6 3.3158 -0.9495 0.7425 30 1 -1.0500 -0.0010 0.0002 31 1 2.7959 1.6989 -1.3248 32 1 5.2763 1.6313 -1.2721 33 1 6.9148 -1.7028 1.3293 34 1 9.2843 -0.1677 1.2570 35 1 9.2826 -1.2633 -0.1459 36 1 11.2594 -2.3916 0.7755 37 1 11.2701 -1.4302 2.2743 38 1 10.9111 -3.5086 3.5951 39 1 12.4029 -3.5983 2.6287 40 1 10.8802 -6.9572 2.1730 41 1 12.3454 -6.0860 2.6855 42 1 10.8734 -6.0164 3.6841 43 1 10.9976 -3.9997 -0.0874 44 1 12.4179 -4.9083 0.4833 45 1 10.9529 -5.7782 -0.0318 46 1 8.8725 -4.8353 2.8799 47 1 8.8824 -5.6306 1.2862 48 1 5.2272 -4.9524 -0.7853 49 1 2.7780 -1.6874 1.3192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089724163.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:58 Heat of formation + Delta-G solvation = 78.448731 kcal Electronic energy + Delta-G solvation = -30617.287407 eV Core-core repulsion = 26739.609950 eV Total energy + Delta-G solvation = -3877.677458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.30197 -39.12811 -38.18826 -35.14061 -34.30520 -33.08698 -32.32386 -31.91282 -30.75393 -30.53758 -27.66574 -26.75575 -25.50287 -25.01417 -23.48542 -23.12658 -22.44344 -20.19915 -20.03310 -19.08973 -18.36334 -17.63754 -16.55609 -16.33876 -15.61784 -15.44606 -14.98821 -14.94652 -14.56467 -14.42098 -14.06928 -13.80576 -13.55022 -13.41520 -13.39546 -13.08359 -12.84740 -12.54586 -12.32604 -12.23928 -11.83985 -11.61486 -11.51412 -11.42876 -11.32811 -11.07558 -10.93187 -10.82534 -10.69650 -10.56887 -10.33379 -9.88807 -9.77902 -9.71210 -9.68116 -9.51286 -9.25821 -9.13124 -8.71297 -8.46039 -8.10300 -6.56457 -5.94289 -3.55442 0.52275 1.36235 2.58275 2.72923 3.38016 3.46128 3.48826 3.51386 3.76385 4.08710 4.27196 4.52419 4.55777 4.82798 4.89920 5.07624 5.20817 5.21587 5.28762 5.35517 5.38195 5.45980 5.63595 5.74450 5.77550 5.85953 5.89678 5.99774 6.03666 6.06889 6.09686 6.13704 6.19696 6.26022 6.33672 6.34878 6.37288 6.42095 6.55532 6.63360 6.66602 6.76045 6.78943 6.89925 6.96974 7.13250 7.23190 7.35304 7.92888 8.12906 8.39451 8.48483 8.90967 8.97939 9.69968 10.17011 11.18831 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.003667 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.500507 B = 7633.922503 C = 8784.572933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.141 4.141 3 C -0.036 4.036 4 C -0.062 4.062 5 C -0.117 4.117 6 C 0.108 3.892 7 C 0.562 3.438 8 O -0.560 6.560 9 N -0.661 5.661 10 C 0.136 3.864 11 C 0.159 3.841 12 H 0.034 0.966 13 C -0.130 4.130 14 C -0.096 4.096 15 C -0.089 4.089 16 C -0.137 4.137 17 C -0.126 4.126 18 C 0.152 3.848 19 N -0.601 5.601 20 C -0.267 4.267 21 H 0.074 0.926 22 C 0.055 3.945 23 N -0.897 5.897 24 Si 0.843 3.157 25 H -0.281 1.281 26 H -0.303 1.303 27 H -0.238 1.238 28 N -0.437 5.437 29 C 0.129 3.871 30 H 0.225 0.775 31 H 0.141 0.859 32 H 0.152 0.848 33 H 0.421 0.579 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.034 0.966 45 H 0.046 0.954 46 H 0.029 0.971 47 H 0.064 0.936 48 H 0.261 0.739 49 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 6.176 5.596 8.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.142 4.142 3 C -0.039 4.039 4 C -0.087 4.087 5 C -0.138 4.138 6 C -0.030 4.030 7 C 0.346 3.654 8 O -0.440 6.440 9 N -0.310 5.310 10 C 0.012 3.988 11 C 0.053 3.947 12 H 0.052 0.948 13 C -0.170 4.170 14 C -0.133 4.133 15 C -0.091 4.091 16 C -0.195 4.195 17 C -0.183 4.183 18 C 0.027 3.973 19 N -0.326 5.326 20 C -0.395 4.395 21 H 0.092 0.908 22 C -0.148 4.148 23 N -0.537 5.537 24 Si 0.672 3.328 25 H -0.207 1.207 26 H -0.230 1.230 27 H -0.163 1.163 28 N -0.147 5.147 29 C -0.031 4.031 30 H 0.242 0.758 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.260 0.740 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.047 0.953 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.672 6.012 5.562 8.217 hybrid contribution -1.501 -0.455 0.404 1.619 sum -2.173 5.557 5.966 8.437 Atomic orbital electron populations 1.24847 0.95657 0.99266 0.99245 1.19764 0.91621 1.01407 1.01417 1.17142 0.87824 0.98454 1.00444 1.21557 0.93559 0.97099 0.96496 1.22013 0.94278 0.99107 0.98419 1.21458 0.95099 0.91861 0.94597 1.17691 0.85443 0.81852 0.80414 1.90713 1.65902 1.41979 1.45426 1.45785 1.07581 1.30785 1.46863 1.21279 0.79937 0.96634 1.00923 1.20843 0.92072 0.86867 0.94926 0.94806 1.21992 0.97067 0.96974 1.00927 1.21407 0.98968 0.94604 0.98368 1.21129 0.98752 0.93783 0.95416 1.21810 1.00028 0.97983 0.99687 1.21714 0.98011 1.02675 0.95896 1.21722 0.89720 0.89755 0.96149 1.44291 1.52799 0.98571 1.36912 1.18570 0.97161 1.30666 0.93138 0.90834 1.25642 0.95255 0.97801 0.96092 1.69774 1.14850 1.41045 1.28008 0.87723 0.79906 0.79005 0.86208 1.20689 1.23043 1.16310 1.67685 1.07903 1.20859 1.18209 1.22922 0.89315 0.95550 0.95336 0.75787 0.84090 0.83068 0.73982 0.92454 0.91129 0.91269 0.92771 0.92870 0.93186 0.93013 0.93470 0.93340 0.91227 0.94707 0.93471 0.95326 0.91807 0.92901 0.82168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 19.25 29.55 0.57 -1.18 16 2 C -0.14 -1.82 13.28 -38.84 -0.52 -2.33 16 3 C -0.04 -0.53 5.75 -106.69 -0.61 -1.14 16 4 C -0.06 -0.84 9.89 -38.93 -0.39 -1.22 16 5 C -0.12 -1.85 9.61 -39.12 -0.38 -2.23 16 6 C 0.11 2.06 6.75 -82.97 -0.56 1.50 16 7 C 0.56 11.78 7.80 -12.26 -0.10 11.68 16 8 O -0.56 -12.42 16.31 5.33 0.09 -12.34 16 9 N -0.66 -13.72 4.12 -61.20 -0.25 -13.97 16 10 C 0.14 2.58 4.50 -4.04 -0.02 2.56 16 11 C 0.16 2.89 3.01 -67.60 -0.20 2.69 16 12 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 13 C -0.13 -2.00 5.03 -26.61 -0.13 -2.13 16 14 C -0.10 -1.41 4.71 -26.69 -0.13 -1.54 16 15 C -0.09 -1.45 0.77 -154.38 -0.12 -1.57 16 16 C -0.14 -1.93 8.48 37.16 0.32 -1.62 16 17 C -0.13 -2.09 7.99 37.16 0.30 -1.79 16 18 C 0.15 3.00 2.71 -3.71 -0.01 2.99 16 19 N -0.60 -12.64 1.85 -164.78 -0.30 -12.94 16 20 C -0.27 -6.66 6.60 -15.06 -0.10 -6.76 16 21 H 0.07 2.12 7.10 -52.49 -0.37 1.74 16 22 C 0.05 1.44 5.28 -17.43 -0.09 1.35 16 23 N -0.90 -25.91 13.97 55.49 0.78 -25.13 16 24 Si 0.84 20.07 26.62 -169.99 -4.53 15.55 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 27 H -0.24 -5.22 3.86 56.52 0.22 -5.00 16 28 N -0.44 -8.45 9.51 -9.49 -0.09 -8.54 16 29 C 0.13 2.13 10.92 -17.14 -0.19 1.94 16 30 H 0.23 1.29 7.80 -54.09 -0.42 0.87 16 31 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 32 H 0.15 2.19 7.63 -52.48 -0.40 1.79 16 33 H 0.42 9.29 6.63 -40.82 -0.27 9.02 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.47 7.47 -51.93 -0.39 1.09 16 36 H 0.07 1.12 6.33 -51.93 -0.33 0.79 16 37 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.03 0.58 6.36 -51.93 -0.33 0.25 16 47 H 0.06 1.39 6.48 -51.93 -0.34 1.06 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -30.19 390.39 -8.33 -38.52 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -7.55 Total: 11.77 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.35 Total: 1.20 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.13 Total: -60.59 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.53 Total: 15.55 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.19 -8.33 -38.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089724163.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.971 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds