Wall clock time and date at job start Wed Apr 1 2020 00:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39982 * 120.46144 * 142.02498 * 3 2 1 5 5 C 1.38221 * 118.37163 * 180.02562 * 4 3 2 6 6 C 1.39488 * 119.20336 * 359.97438 * 5 4 3 7 7 C 1.47998 * 119.56753 * 179.97438 * 6 5 4 8 8 O 1.21538 * 119.99839 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99738 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99890 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.46914 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.59142 * 299.77762 * 11 10 9 13 13 C 1.53193 * 109.70074 * 179.42245 * 11 10 9 14 14 C 1.53042 * 109.31693 * 185.50795 * 13 11 10 15 15 C 1.53037 * 109.53514 * 61.36201 * 14 13 11 16 16 C 1.53001 * 109.49892 * 178.68638 * 15 14 13 17 17 C 1.53005 * 109.49390 * 58.59318 * 15 14 13 18 18 C 1.53195 * 109.31804 * 298.63939 * 15 14 13 19 19 N 1.46925 * 109.58785 * 60.06641 * 11 10 9 20 20 C 1.36936 * 120.63162 * 353.55574 * 19 11 10 21 21 H 1.08001 * 119.99804 * 49.29570 * 20 19 11 22 22 C 1.38809 * 120.00240 * 229.29204 * 20 19 11 23 23 N 1.31614 * 120.00238 * 188.70348 * 22 20 19 24 24 Si 1.86804 * 119.99911 * 8.70546 * 22 20 19 25 25 H 1.48499 * 109.47080 * 84.53013 * 24 22 20 26 26 H 1.48496 * 109.47108 * 204.53435 * 24 22 20 27 27 H 1.48502 * 109.47054 * 324.53161 * 24 22 20 28 28 N 1.32819 * 120.86430 * 0.25554 * 6 5 4 29 29 C 1.31304 * 121.78652 * 359.47495 * 28 6 5 30 30 H 4.52931 * 13.94544 * 359.97438 * 4 2 1 31 31 H 1.08010 * 120.81891 * 0.03635 * 4 3 2 32 32 H 1.08004 * 120.39799 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00502 * 359.97438 * 9 7 6 34 34 H 1.08995 * 109.46996 * 59.99638 * 10 9 7 35 35 H 1.09000 * 109.46543 * 299.99473 * 10 9 7 36 36 H 1.09003 * 109.50170 * 305.45983 * 13 11 10 37 37 H 1.09008 * 109.49584 * 65.55867 * 13 11 10 38 38 H 1.09002 * 109.45666 * 301.34871 * 14 13 11 39 39 H 1.08999 * 109.46487 * 181.38950 * 14 13 11 40 40 H 1.09000 * 109.47307 * 179.84280 * 16 15 14 41 41 H 1.09006 * 109.47139 * 299.84137 * 16 15 14 42 42 H 1.09002 * 109.47119 * 59.84261 * 16 15 14 43 43 H 1.08997 * 109.46932 * 300.15572 * 17 15 14 44 44 H 1.09001 * 109.47009 * 60.16213 * 17 15 14 45 45 H 1.09003 * 109.47068 * 180.15669 * 17 15 14 46 46 H 1.08997 * 109.58623 * 294.84707 * 18 15 14 47 47 H 1.08996 * 109.70092 * 174.49221 * 18 15 14 48 48 H 0.97007 * 120.00378 * 180.02562 * 23 22 20 49 49 H 1.07997 * 119.65204 * 180.28702 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3152 0.9521 -0.7424 5 6 4.6965 0.9127 -0.7119 6 6 5.3327 -0.0658 0.0521 7 6 6.8113 -0.1158 0.0902 8 8 7.4631 0.6921 -0.5420 9 7 7.4350 -1.0578 0.8251 10 6 8.8987 -1.1076 0.8624 11 6 9.3469 -2.2605 1.7629 12 1 8.9672 -2.1044 2.7726 13 6 10.8771 -2.3265 1.7942 14 6 11.3144 -3.5623 2.5838 15 6 10.7906 -4.8231 1.8924 16 6 11.2558 -6.0596 2.6643 17 6 11.3284 -4.8815 0.4612 18 6 9.2594 -4.7855 1.8622 19 7 8.8296 -3.5294 1.2327 20 6 7.9638 -3.5411 0.1719 21 1 8.1923 -2.9733 -0.7179 22 6 6.7924 -4.2828 0.2402 23 7 6.0459 -4.4344 -0.8331 24 14 6.2756 -5.0658 1.8556 25 1 5.5370 -4.0708 2.6739 26 1 5.3974 -6.2315 1.5820 27 1 7.4816 -5.5174 2.5950 28 7 4.6288 -0.9566 0.7414 29 6 3.3158 -0.9495 0.7425 30 1 -1.0500 -0.0010 0.0002 31 1 2.7959 1.6989 -1.3248 32 1 5.2763 1.6313 -1.2721 33 1 6.9148 -1.7028 1.3293 34 1 9.2843 -0.1677 1.2570 35 1 9.2826 -1.2633 -0.1459 36 1 11.2594 -2.3916 0.7755 37 1 11.2701 -1.4302 2.2743 38 1 10.9111 -3.5086 3.5951 39 1 12.4029 -3.5983 2.6287 40 1 10.8802 -6.9572 2.1730 41 1 12.3454 -6.0860 2.6855 42 1 10.8734 -6.0164 3.6841 43 1 10.9976 -3.9997 -0.0874 44 1 12.4179 -4.9083 0.4833 45 1 10.9529 -5.7782 -0.0318 46 1 8.8725 -4.8353 2.8799 47 1 8.8824 -5.6306 1.2862 48 1 5.2272 -4.9524 -0.7853 49 1 2.7780 -1.6874 1.3192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089724163.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:57 Heat of formation + Delta-G solvation = 60.515012 kcal Electronic energy + Delta-G solvation = -30618.065072 eV Core-core repulsion = 26739.609950 eV Total energy + Delta-G solvation = -3878.455122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.65977 -40.59184 -39.70002 -36.68252 -35.39577 -34.87409 -33.77163 -33.22961 -32.50917 -31.69753 -29.04070 -28.05322 -27.25911 -26.33774 -24.81070 -24.58940 -23.89516 -21.74509 -21.57627 -20.09596 -19.83904 -19.18512 -18.07599 -17.90338 -17.11006 -16.69768 -16.54865 -16.47682 -15.96697 -15.90576 -15.50746 -15.29857 -14.94056 -14.82115 -14.78798 -14.50659 -14.30435 -14.10485 -13.90738 -13.52091 -13.30964 -13.03579 -12.80381 -12.74192 -12.66714 -12.58184 -12.52510 -12.26248 -12.06100 -11.92941 -11.88994 -11.45893 -11.25981 -11.16538 -11.04421 -10.91530 -10.88189 -10.50709 -10.38323 -9.99936 -9.70100 -8.36779 -8.03245 -5.60638 -0.71241 0.15780 1.43235 1.46460 1.50625 1.52733 1.69094 2.18131 2.36227 2.54850 2.94273 3.07234 3.25504 3.30485 3.36414 3.70651 3.80992 3.93710 3.98301 3.99105 4.11600 4.18421 4.29326 4.39083 4.48036 4.61789 4.62478 4.68115 4.77848 4.80691 4.88695 4.91331 4.93951 5.02439 5.06608 5.08053 5.09674 5.14756 5.15751 5.23129 5.33247 5.47107 5.49202 5.50323 5.59131 5.63797 5.78734 6.08901 6.39304 6.45959 6.55008 6.82180 7.12169 7.25704 7.70861 8.21387 9.13440 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.003667 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.500507 B = 7633.922503 C = 8784.572933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.209 4.209 3 C -0.018 4.018 4 C -0.055 4.055 5 C -0.112 4.112 6 C 0.068 3.932 7 C 0.556 3.444 8 O -0.582 6.582 9 N -0.668 5.668 10 C 0.137 3.863 11 C 0.159 3.841 12 H 0.046 0.954 13 C -0.124 4.124 14 C -0.091 4.091 15 C -0.086 4.086 16 C -0.133 4.133 17 C -0.120 4.120 18 C 0.148 3.852 19 N -0.609 5.609 20 C -0.228 4.228 21 H 0.026 0.974 22 C 0.008 3.992 23 N -0.947 5.947 24 Si 0.890 3.110 25 H -0.285 1.285 26 H -0.321 1.321 27 H -0.204 1.204 28 N -0.468 5.468 29 C 0.107 3.893 30 H 0.270 0.730 31 H 0.181 0.819 32 H 0.161 0.839 33 H 0.414 0.586 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.042 0.958 44 H 0.061 0.939 45 H 0.030 0.970 46 H 0.034 0.966 47 H 0.037 0.963 48 H 0.254 0.746 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 6.856 7.780 10.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.209 4.209 3 C -0.021 4.021 4 C -0.080 4.080 5 C -0.133 4.133 6 C -0.069 4.069 7 C 0.341 3.659 8 O -0.464 6.464 9 N -0.315 5.315 10 C 0.014 3.986 11 C 0.053 3.947 12 H 0.064 0.936 13 C -0.163 4.163 14 C -0.129 4.129 15 C -0.088 4.088 16 C -0.190 4.190 17 C -0.178 4.178 18 C 0.023 3.977 19 N -0.335 5.335 20 C -0.359 4.359 21 H 0.043 0.957 22 C -0.190 4.190 23 N -0.590 5.590 24 Si 0.719 3.281 25 H -0.212 1.212 26 H -0.250 1.250 27 H -0.127 1.127 28 N -0.178 5.178 29 C -0.054 4.054 30 H 0.286 0.714 31 H 0.198 0.802 32 H 0.179 0.821 33 H 0.251 0.749 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.739 6.702 7.782 10.297 hybrid contribution -1.594 -0.587 -0.355 1.736 sum -2.333 6.115 7.428 9.900 Atomic orbital electron populations 1.25892 0.96286 0.95424 0.95175 1.19797 0.91707 1.04705 1.04740 1.17283 0.89307 0.97017 0.98444 1.21956 0.92514 0.97434 0.96073 1.22173 0.95499 0.98170 0.97443 1.21299 0.94083 0.94051 0.97431 1.18114 0.86663 0.81405 0.79726 1.90665 1.66784 1.42777 1.46222 1.45859 1.08188 1.30622 1.46850 1.21357 0.79240 0.98293 0.99747 1.21015 0.94250 0.84732 0.94654 0.93621 1.21942 0.94260 0.99106 1.01026 1.21407 1.00623 0.92614 0.98214 1.21071 0.95670 0.96312 0.95740 1.21764 1.01523 0.96166 0.99586 1.21649 0.99667 1.00551 0.95899 1.21707 0.92750 0.87886 0.95319 1.44345 1.52529 1.00519 1.36120 1.18106 0.97149 1.28086 0.92515 0.95657 1.26105 0.95458 0.99065 0.98334 1.69926 1.15581 1.43376 1.30167 0.86986 0.80288 0.77382 0.83442 1.21166 1.25004 1.12739 1.67526 1.09425 1.21617 1.19256 1.23184 0.88666 0.96888 0.96614 0.71439 0.80200 0.82141 0.74871 0.90227 0.94026 0.92411 0.89780 0.91756 0.90434 0.93634 0.91146 0.92313 0.93941 0.91974 0.95073 0.94817 0.94462 0.93747 0.81246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 19.25 74.32 1.43 -0.37 16 2 C -0.21 -4.93 13.28 30.02 0.40 -4.53 16 3 C -0.02 -0.52 5.75 -21.20 -0.12 -0.65 16 4 C -0.05 -1.44 9.89 22.69 0.22 -1.22 16 5 C -0.11 -3.63 9.61 22.57 0.22 -3.42 16 6 C 0.07 2.77 6.75 41.89 0.28 3.05 16 7 C 0.56 24.78 7.80 86.83 0.68 25.46 16 8 O -0.58 -27.26 16.31 -3.83 -0.06 -27.32 16 9 N -0.67 -29.31 4.12 -465.83 -1.92 -31.23 16 10 C 0.14 5.38 4.50 86.38 0.39 5.77 16 11 C 0.16 5.69 3.01 44.97 0.14 5.82 16 12 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 13 C -0.12 -3.54 5.03 30.67 0.15 -3.38 16 14 C -0.09 -2.33 4.71 30.62 0.14 -2.18 16 15 C -0.09 -2.61 0.77 -52.10 -0.04 -2.65 16 16 C -0.13 -3.27 8.48 71.98 0.61 -2.66 16 17 C -0.12 -3.88 7.99 71.98 0.58 -3.31 16 18 C 0.15 5.71 2.71 86.36 0.23 5.95 16 19 N -0.61 -26.01 1.85 -675.24 -1.25 -27.26 16 20 C -0.23 -12.04 6.60 84.03 0.55 -11.49 16 21 H 0.03 1.60 7.10 -2.91 -0.02 1.58 16 22 C 0.01 0.44 5.28 84.86 0.45 0.88 16 23 N -0.95 -58.22 13.97 21.65 0.30 -57.92 16 24 Si 0.89 42.79 26.62 68.60 1.83 44.61 16 25 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 26 H -0.32 -16.36 7.11 99.48 0.71 -15.66 16 27 H -0.20 -8.60 3.86 99.48 0.38 -8.21 16 28 N -0.47 -19.20 9.51 -183.93 -1.75 -20.95 16 29 C 0.11 3.68 10.92 85.18 0.93 4.61 16 30 H 0.27 1.50 7.80 -4.42 -0.03 1.46 16 31 H 0.18 3.25 8.06 -2.91 -0.02 3.22 16 32 H 0.16 4.76 7.63 -2.91 -0.02 4.74 16 33 H 0.41 19.28 6.63 -92.71 -0.62 18.66 16 34 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.04 1.86 7.47 -2.39 -0.02 1.84 16 36 H 0.06 1.80 6.33 -2.39 -0.02 1.79 16 37 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.04 1.59 5.97 -2.39 -0.01 1.57 16 44 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.03 1.29 6.36 -2.39 -0.02 1.27 16 47 H 0.04 1.63 6.48 -2.39 -0.02 1.61 16 48 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 49 H 0.17 5.18 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -72.45 390.39 4.41 -68.04 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.02 Total: 36.34 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 7.24 Total: 15.68 kcal Atomic # 7 Polarization: -132.74 SS G_CDS: -4.62 Total: -137.35 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.06 Total: -27.32 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.83 Total: 44.61 kcal Total: -72.45 4.41 -68.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089724163.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.557 kcal (2) G-P(sol) polarization free energy of solvation -72.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds