Wall clock time and date at job start Wed Apr 1 2020 01:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47330 * 2 1 4 4 F 1.39898 * 109.47453 * 239.99342 * 2 1 3 5 5 C 1.50708 * 109.46535 * 119.99555 * 2 1 3 6 6 O 1.21277 * 120.00273 * 359.97438 * 5 2 1 7 7 N 1.34772 * 119.99785 * 180.02562 * 5 2 1 8 8 C 1.46496 * 120.00113 * 180.02562 * 7 5 2 9 9 C 1.53948 * 113.58102 * 204.99740 * 8 7 5 10 10 C 1.52908 * 86.78626 * 220.65956 * 9 8 7 11 11 C 1.52905 * 121.13932 * 150.61525 * 10 9 8 12 12 C 1.53948 * 86.78200 * 100.82450 * 11 10 9 13 13 N 1.46906 * 113.57852 * 139.33722 * 12 11 10 14 14 C 1.46901 * 110.99793 * 155.00085 * 13 12 11 15 15 C 1.50701 * 109.46921 * 179.97438 * 14 13 12 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47268 * 89.99721 * 22 20 18 24 24 H 1.48498 * 109.47211 * 209.99980 * 22 20 18 25 25 H 1.48505 * 109.46734 * 329.99774 * 22 20 18 26 26 C 1.52910 * 121.13875 * 259.18147 * 10 9 8 27 27 C 1.52910 * 88.03802 * 24.89648 * 10 9 8 28 28 H 1.09002 * 109.47507 * 300.00547 * 1 2 3 29 29 H 1.09002 * 109.46629 * 60.00392 * 1 2 3 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46770 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46432 * 299.99457 * 3 2 1 33 33 H 1.09002 * 109.47272 * 59.99309 * 3 2 1 34 34 H 0.97004 * 120.00236 * 359.97438 * 7 5 2 35 35 H 1.09006 * 112.87709 * 336.13081 * 8 7 5 36 36 H 1.09005 * 113.66271 * 106.18819 * 9 8 7 37 37 H 1.08999 * 113.74755 * 335.14843 * 9 8 7 38 38 H 1.08993 * 113.65988 * 346.34952 * 11 10 9 39 39 H 1.08999 * 113.66243 * 215.29852 * 11 10 9 40 40 H 1.09002 * 113.58274 * 270.04979 * 12 11 10 41 41 H 1.00899 * 110.99995 * 31.04483 * 13 12 11 42 42 H 1.09002 * 109.47401 * 59.99808 * 14 13 12 43 43 H 1.09001 * 109.46874 * 299.99821 * 14 13 12 44 44 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 45 45 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.66169 * 144.69776 * 26 10 9 47 47 H 1.08998 * 113.66306 * 13.64833 * 26 10 9 48 48 H 1.08999 * 113.66166 * 89.57472 * 27 10 9 49 49 H 1.09001 * 113.66107 * 220.62624 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0322 -0.7104 1.2306 6 8 1.2441 -1.1708 2.0292 7 7 3.3572 -0.8331 1.4442 8 6 3.8455 -1.5241 2.6402 9 6 5.2561 -1.0846 3.0726 10 6 5.5323 -2.5597 3.3658 11 6 6.9427 -3.1385 3.2488 12 6 7.0212 -3.0288 4.7823 13 7 7.6711 -4.1809 5.4213 14 6 8.2468 -3.8070 6.7201 15 6 8.9027 -5.0117 7.3443 16 8 8.8920 -6.0768 6.7641 17 7 9.5020 -4.9053 8.5468 18 6 10.0992 -6.0012 9.1145 19 1 10.0889 -6.9497 8.5982 20 6 10.7165 -5.8917 10.3543 21 7 10.7285 -4.7375 10.9828 22 14 11.5308 -7.3845 11.1275 23 1 12.9523 -7.4486 10.7027 24 1 11.4606 -7.2760 12.6069 25 1 10.8266 -8.6157 10.6875 26 6 5.4837 -3.1047 4.7936 27 6 4.4465 -2.9109 2.3480 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 3.9877 -0.4645 0.8057 35 1 3.1206 -1.5257 3.4543 36 1 5.2644 -0.4530 3.9610 37 1 5.8584 -0.6799 2.2593 38 1 7.6418 -2.4850 2.7271 39 1 6.9654 -4.1646 2.8818 40 1 7.4145 -2.0741 5.1317 41 1 8.3725 -4.5817 4.8168 42 1 7.4565 -3.4430 7.3766 43 1 8.9896 -3.0224 6.5759 44 1 9.5109 -4.0535 9.0106 45 1 11.1599 -4.6610 11.8482 46 1 5.0962 -4.1213 4.8609 47 1 5.0173 -2.4242 5.5060 48 1 4.8201 -3.0201 1.3299 49 1 3.8081 -3.7385 2.6575 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120501398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:27 Heat of formation + Delta-G solvation = -84.477910 kcal Electronic energy + Delta-G solvation = -28874.456557 eV Core-core repulsion = 24558.944846 eV Total energy + Delta-G solvation = -4315.511712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.40387 -41.06391 -39.72794 -38.20200 -36.49195 -34.36608 -34.10993 -33.61334 -31.83743 -31.14610 -28.02119 -26.70959 -26.18452 -25.89366 -25.04409 -24.00135 -22.29288 -20.71693 -20.50634 -19.24896 -18.50761 -17.95437 -17.83390 -16.97653 -16.48895 -16.21516 -15.69056 -15.55885 -15.39448 -15.27368 -14.93571 -14.62091 -14.46778 -13.95803 -13.76410 -13.58633 -13.36675 -13.12278 -13.00251 -12.92346 -12.87129 -12.65236 -12.60317 -12.48894 -12.25808 -12.15731 -11.73023 -11.56724 -11.52464 -11.36533 -11.08623 -11.02081 -10.71362 -10.38370 -10.30354 -10.22277 -10.20628 -10.02487 -9.49688 -9.43770 -8.41982 -8.03737 -7.94153 -6.40487 -3.81277 1.96304 2.52986 3.18748 3.27289 3.33566 3.76641 3.85976 3.92824 4.04524 4.09405 4.13731 4.19521 4.22300 4.33407 4.44436 4.56201 4.69586 4.83803 4.86378 4.93819 5.08909 5.13003 5.21733 5.25177 5.28751 5.33002 5.35137 5.41216 5.43850 5.56617 5.59972 5.70111 5.71888 5.74306 5.83237 5.84886 5.97454 6.00084 6.14973 6.22442 6.29906 6.39425 6.94688 7.33127 7.56408 7.61746 7.70754 8.07979 8.62906 9.19297 9.55986 10.07608 10.77283 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.040776 B = 0.001466 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.512894 B =19094.710685 C =19181.994487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.101 3.899 3 C -0.174 4.174 4 F -0.194 7.194 5 C 0.500 3.500 6 O -0.520 6.520 7 N -0.709 5.709 8 C 0.121 3.879 9 C -0.120 4.120 10 C -0.103 4.103 11 C -0.124 4.124 12 C 0.062 3.938 13 N -0.657 5.657 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.101 4.101 27 C -0.134 4.134 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.403 0.597 35 H 0.118 0.882 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.350 0.650 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.096 0.904 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.817 16.902 -22.214 32.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.080 3.920 3 C -0.231 4.231 4 F -0.175 7.175 5 C 0.283 3.717 6 O -0.395 6.395 7 N -0.359 5.359 8 C 0.017 3.983 9 C -0.158 4.158 10 C -0.104 4.104 11 C -0.162 4.162 12 C -0.049 4.049 13 N -0.289 5.289 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.139 4.139 27 C -0.173 4.173 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.238 0.762 35 H 0.135 0.865 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.170 0.830 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.114 0.886 47 H 0.084 0.916 48 H 0.104 0.896 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.872 15.628 -21.567 31.528 hybrid contribution 1.646 0.534 0.125 1.735 sum -15.226 16.161 -21.442 30.867 Atomic orbital electron populations 1.22177 0.90786 1.04788 1.03923 1.21230 0.97088 0.92890 0.80807 1.22417 1.02664 0.93160 1.04876 1.92930 1.90245 1.82706 1.51611 1.20850 0.83129 0.79974 0.87716 1.90749 1.55188 1.47045 1.46520 1.46038 1.06674 1.57887 1.25304 1.22673 0.95108 0.92690 0.87854 1.23082 0.94955 0.95941 1.01857 1.22070 0.95768 0.95424 0.97140 1.23033 0.95298 1.01798 0.96079 1.23003 0.95449 0.93075 0.93332 1.60219 1.36387 1.27999 1.04298 1.21731 0.98046 0.96201 0.92287 1.19852 0.84184 0.89825 0.83520 1.90521 1.63419 1.29438 1.63398 1.41870 1.48928 1.12661 1.16654 1.19712 1.30673 0.91287 1.01231 0.87931 1.25256 0.97959 0.98113 0.96617 1.69616 1.44671 1.24060 1.16030 0.85855 0.79332 0.81191 0.77899 1.20447 1.20930 1.19404 1.22837 0.96218 1.01827 0.93007 1.23270 0.97286 0.97214 0.99506 0.89839 0.90618 0.90525 0.90865 0.89906 0.89857 0.76243 0.86462 0.90339 0.89377 0.91559 0.88896 0.91236 0.82985 0.89687 0.93967 0.77478 0.91906 0.88586 0.91640 0.89629 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 8.22 37.16 0.31 -0.66 16 2 C 0.10 0.67 1.54 -91.77 -0.14 0.53 16 3 C -0.17 -0.65 8.83 37.16 0.33 -0.33 16 4 F -0.19 -1.56 16.79 2.25 0.04 -1.52 16 5 C 0.50 4.47 6.87 -10.98 -0.08 4.40 16 6 O -0.52 -6.54 15.58 5.56 0.09 -6.45 16 7 N -0.71 -5.01 5.25 -52.86 -0.28 -5.29 16 8 C 0.12 0.98 4.24 -66.95 -0.28 0.69 16 9 C -0.12 -0.83 7.59 -26.28 -0.20 -1.03 16 10 C -0.10 -0.90 1.11 -154.71 -0.17 -1.08 16 11 C -0.12 -1.22 7.41 -26.29 -0.19 -1.41 16 12 C 0.06 0.74 4.14 -66.73 -0.28 0.46 16 13 N -0.66 -10.55 6.18 -106.95 -0.66 -11.21 16 14 C 0.05 0.89 6.01 -4.97 -0.03 0.86 16 15 C 0.44 10.52 7.82 -10.98 -0.09 10.43 16 16 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 17 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 18 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 22 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C -0.10 -1.12 7.64 -26.28 -0.20 -1.32 16 27 C -0.13 -1.16 7.64 -26.28 -0.20 -1.36 16 28 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.07 0.21 7.56 -51.93 -0.39 -0.19 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.40 1.90 8.14 -40.82 -0.33 1.57 16 35 H 0.12 1.15 7.47 -51.93 -0.39 0.77 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.79 7.86 -51.93 -0.41 0.38 16 41 H 0.35 5.80 8.25 -39.29 -0.32 5.47 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.04 0.68 8.13 -51.93 -0.42 0.25 16 44 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 407.69 15.07 6.14 6.14 Total: -1.00 -33.40 407.69 -8.42 -41.82 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -8.01 Total: 12.65 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -1.47 Total: 2.10 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.27 Total: -54.96 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.17 Total: -22.40 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.40 -8.42 -41.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120501398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.659 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds