Wall clock time and date at job start Wed Apr 1 2020 01:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47330 * 2 1 4 4 F 1.39898 * 109.47453 * 239.99342 * 2 1 3 5 5 C 1.50708 * 109.46535 * 119.99555 * 2 1 3 6 6 O 1.21277 * 120.00273 * 359.97438 * 5 2 1 7 7 N 1.34772 * 119.99785 * 180.02562 * 5 2 1 8 8 C 1.46496 * 120.00113 * 180.02562 * 7 5 2 9 9 C 1.53948 * 113.58102 * 204.99740 * 8 7 5 10 10 C 1.52908 * 86.78626 * 220.65956 * 9 8 7 11 11 C 1.52905 * 121.13932 * 150.61525 * 10 9 8 12 12 C 1.53948 * 86.78200 * 100.82450 * 11 10 9 13 13 N 1.46906 * 113.57852 * 139.33722 * 12 11 10 14 14 C 1.46901 * 110.99793 * 155.00085 * 13 12 11 15 15 C 1.50701 * 109.46921 * 179.97438 * 14 13 12 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47268 * 89.99721 * 22 20 18 24 24 H 1.48498 * 109.47211 * 209.99980 * 22 20 18 25 25 H 1.48505 * 109.46734 * 329.99774 * 22 20 18 26 26 C 1.52910 * 121.13875 * 259.18147 * 10 9 8 27 27 C 1.52910 * 88.03802 * 24.89648 * 10 9 8 28 28 H 1.09002 * 109.47507 * 300.00547 * 1 2 3 29 29 H 1.09002 * 109.46629 * 60.00392 * 1 2 3 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46770 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46432 * 299.99457 * 3 2 1 33 33 H 1.09002 * 109.47272 * 59.99309 * 3 2 1 34 34 H 0.97004 * 120.00236 * 359.97438 * 7 5 2 35 35 H 1.09006 * 112.87709 * 336.13081 * 8 7 5 36 36 H 1.09005 * 113.66271 * 106.18819 * 9 8 7 37 37 H 1.08999 * 113.74755 * 335.14843 * 9 8 7 38 38 H 1.08993 * 113.65988 * 346.34952 * 11 10 9 39 39 H 1.08999 * 113.66243 * 215.29852 * 11 10 9 40 40 H 1.09002 * 113.58274 * 270.04979 * 12 11 10 41 41 H 1.00899 * 110.99995 * 31.04483 * 13 12 11 42 42 H 1.09002 * 109.47401 * 59.99808 * 14 13 12 43 43 H 1.09001 * 109.46874 * 299.99821 * 14 13 12 44 44 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 45 45 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.66169 * 144.69776 * 26 10 9 47 47 H 1.08998 * 113.66306 * 13.64833 * 26 10 9 48 48 H 1.08999 * 113.66166 * 89.57472 * 27 10 9 49 49 H 1.09001 * 113.66107 * 220.62624 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0322 -0.7104 1.2306 6 8 1.2441 -1.1708 2.0292 7 7 3.3572 -0.8331 1.4442 8 6 3.8455 -1.5241 2.6402 9 6 5.2561 -1.0846 3.0726 10 6 5.5323 -2.5597 3.3658 11 6 6.9427 -3.1385 3.2488 12 6 7.0212 -3.0288 4.7823 13 7 7.6711 -4.1809 5.4213 14 6 8.2468 -3.8070 6.7201 15 6 8.9027 -5.0117 7.3443 16 8 8.8920 -6.0768 6.7641 17 7 9.5020 -4.9053 8.5468 18 6 10.0992 -6.0012 9.1145 19 1 10.0889 -6.9497 8.5982 20 6 10.7165 -5.8917 10.3543 21 7 10.7285 -4.7375 10.9828 22 14 11.5308 -7.3845 11.1275 23 1 12.9523 -7.4486 10.7027 24 1 11.4606 -7.2760 12.6069 25 1 10.8266 -8.6157 10.6875 26 6 5.4837 -3.1047 4.7936 27 6 4.4465 -2.9109 2.3480 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 3.9877 -0.4645 0.8057 35 1 3.1206 -1.5257 3.4543 36 1 5.2644 -0.4530 3.9610 37 1 5.8584 -0.6799 2.2593 38 1 7.6418 -2.4850 2.7271 39 1 6.9654 -4.1646 2.8818 40 1 7.4145 -2.0741 5.1317 41 1 8.3725 -4.5817 4.8168 42 1 7.4565 -3.4430 7.3766 43 1 8.9896 -3.0224 6.5759 44 1 9.5109 -4.0535 9.0106 45 1 11.1599 -4.6610 11.8482 46 1 5.0962 -4.1213 4.8609 47 1 5.0173 -2.4242 5.5060 48 1 4.8201 -3.0201 1.3299 49 1 3.8081 -3.7385 2.6575 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120501398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:26 Heat of formation + Delta-G solvation = -108.616353 kcal Electronic energy + Delta-G solvation = -28875.503279 eV Core-core repulsion = 24558.944846 eV Total energy + Delta-G solvation = -4316.558433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.97098 -41.81076 -40.52481 -40.03015 -37.45957 -36.00773 -35.03069 -34.58488 -33.29436 -32.69540 -28.45254 -28.25672 -26.84691 -26.74516 -26.13408 -25.35420 -23.08644 -21.52374 -21.24070 -21.06016 -19.92213 -19.16777 -18.60938 -17.80869 -17.65327 -17.02635 -16.86890 -16.61570 -16.34092 -16.19295 -16.15929 -15.80350 -15.68751 -15.35093 -15.07389 -14.59695 -14.19695 -14.02406 -13.86831 -13.68093 -13.52936 -13.42508 -13.40254 -13.30321 -13.11040 -13.07399 -13.03801 -12.94009 -12.83372 -12.42720 -12.27774 -12.12939 -12.01790 -11.95576 -11.51699 -11.50467 -11.07260 -11.00354 -10.77262 -10.32047 -10.11042 -10.02132 -9.28517 -8.47213 -5.96184 1.28447 1.37713 1.41508 1.54435 1.93367 2.04727 2.29125 2.96041 3.20029 3.24081 3.41332 3.43823 3.44849 3.54566 3.61894 3.66987 3.78541 3.81006 3.93472 3.99459 4.30289 4.38788 4.42503 4.49182 4.58619 4.59383 4.63950 4.68008 4.76647 4.77403 4.89351 4.94475 4.95897 4.97539 5.02038 5.05688 5.09124 5.13933 5.17135 5.34713 5.40397 5.48344 5.53953 5.94198 6.20531 6.35621 6.45639 6.59866 7.00906 7.12003 7.55636 8.11126 8.70136 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.040776 B = 0.001466 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.512894 B =19094.710685 C =19181.994487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 C -0.170 4.170 4 F -0.202 7.202 5 C 0.494 3.506 6 O -0.565 6.565 7 N -0.695 5.695 8 C 0.120 3.880 9 C -0.103 4.103 10 C -0.094 4.094 11 C -0.116 4.116 12 C 0.057 3.943 13 N -0.674 5.674 14 C 0.066 3.934 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.107 4.107 27 C -0.135 4.135 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.417 0.583 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.345 0.655 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.097 0.903 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.161 19.145 -23.221 33.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.081 3.919 3 C -0.227 4.227 4 F -0.183 7.183 5 C 0.278 3.722 6 O -0.443 6.443 7 N -0.346 5.346 8 C 0.016 3.984 9 C -0.140 4.140 10 C -0.095 4.095 11 C -0.154 4.154 12 C -0.052 4.052 13 N -0.306 5.306 14 C -0.066 4.066 15 C 0.224 3.776 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.145 4.145 27 C -0.174 4.174 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.255 0.745 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.164 0.836 42 H 0.117 0.883 43 H 0.086 0.914 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.115 0.885 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.199 17.921 -22.594 33.076 hybrid contribution 1.391 -0.188 0.409 1.462 sum -14.808 17.732 -22.185 32.029 Atomic orbital electron populations 1.22207 0.90731 1.03864 1.05003 1.21321 0.97231 0.94115 0.79263 1.22443 1.03522 0.90849 1.05886 1.92914 1.90349 1.83140 1.51889 1.21362 0.83284 0.79458 0.88046 1.90730 1.56329 1.48988 1.48248 1.45946 1.06492 1.57025 1.25133 1.22527 0.95486 0.92698 0.87731 1.23051 0.93686 0.94397 1.02899 1.21948 0.95095 0.97016 0.95415 1.22967 0.96228 1.01736 0.94422 1.23184 0.95162 0.92198 0.94648 1.60221 1.36167 1.30366 1.03856 1.21581 0.98578 0.93481 0.93004 1.20950 0.82879 0.91149 0.82631 1.90487 1.64630 1.31759 1.64260 1.41938 1.49410 1.12257 1.17416 1.19679 1.33019 0.91460 1.02425 0.90397 1.26036 0.97784 1.00977 0.96383 1.69673 1.44638 1.25369 1.16375 0.84923 0.78439 0.77479 0.77459 1.19490 1.19491 1.19921 1.22809 0.95769 1.00894 0.95057 1.23286 0.97066 0.96983 1.00016 0.89774 0.88496 0.92486 0.89552 0.88426 0.89331 0.74522 0.88564 0.89662 0.86795 0.89423 0.90112 0.89622 0.83585 0.88296 0.91407 0.76959 0.91275 0.90966 0.91141 0.88505 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 8.22 71.98 0.59 -1.27 16 2 C 0.10 1.21 1.54 -11.54 -0.02 1.20 16 3 C -0.17 -0.84 8.83 71.98 0.64 -0.20 16 4 F -0.20 -2.95 16.79 44.97 0.76 -2.19 16 5 C 0.49 8.53 6.87 87.66 0.60 9.13 16 6 O -0.56 -14.58 15.58 -3.02 -0.05 -14.63 16 7 N -0.70 -8.68 5.25 -439.53 -2.31 -10.99 16 8 C 0.12 1.79 4.24 45.63 0.19 1.99 16 9 C -0.10 -1.11 7.59 30.88 0.23 -0.88 16 10 C -0.09 -1.49 1.11 -52.31 -0.06 -1.55 16 11 C -0.12 -2.04 7.41 30.88 0.23 -1.81 16 12 C 0.06 1.28 4.14 45.55 0.19 1.47 16 13 N -0.67 -21.30 6.18 -492.27 -3.04 -24.34 16 14 C 0.07 2.28 6.01 85.56 0.51 2.80 16 15 C 0.44 21.12 7.82 87.66 0.69 21.80 16 16 O -0.62 -35.33 15.78 -3.07 -0.05 -35.37 16 17 N -0.57 -29.81 5.29 -306.98 -1.62 -31.43 16 18 C -0.34 -19.37 9.68 84.04 0.81 -18.56 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 21 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 22 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 26 C -0.11 -2.31 7.64 30.88 0.24 -2.07 16 27 C -0.13 -2.22 7.64 30.88 0.24 -1.98 16 28 H 0.08 0.95 8.10 -2.39 -0.02 0.93 16 29 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.87 8.10 -2.39 -0.02 0.86 16 31 H 0.09 0.21 7.56 -2.39 -0.02 0.19 16 32 H 0.10 0.23 8.14 -2.39 -0.02 0.22 16 33 H 0.09 0.37 8.14 -2.39 -0.02 0.36 16 34 H 0.42 2.76 8.14 -92.71 -0.76 2.01 16 35 H 0.10 1.91 7.47 -2.38 -0.02 1.89 16 36 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.11 0.72 8.12 -2.39 -0.02 0.70 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 1.68 7.86 -2.39 -0.02 1.66 16 41 H 0.34 11.39 8.25 -89.69 -0.74 10.65 16 42 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 44 H 0.40 19.51 7.90 -92.71 -0.73 18.77 16 45 H 0.28 14.07 8.31 -92.71 -0.77 13.29 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 47 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -74.47 407.69 0.30 -74.16 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -1.24 Total: 39.18 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 5.55 Total: 9.88 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -6.69 Total: -116.32 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.10 Total: -50.00 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.76 Total: -2.19 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -74.47 0.30 -74.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120501398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.453 kcal (2) G-P(sol) polarization free energy of solvation -74.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds