Wall clock time and date at job start Wed Apr 1 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 F 1.39904 * 109.47494 * 295.00470 * 3 2 1 6 6 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 7 7 O 1.21279 * 119.99856 * 45.00230 * 6 3 2 8 8 N 1.34773 * 120.00340 * 225.00341 * 6 3 2 9 9 C 1.46492 * 120.00436 * 180.02562 * 8 6 3 10 10 C 1.53945 * 113.58128 * 252.72197 * 9 8 6 11 11 C 1.52914 * 86.78130 * 220.65886 * 10 9 8 12 12 C 1.52910 * 121.13453 * 150.61931 * 11 10 9 13 13 C 1.53948 * 86.78642 * 100.81880 * 12 11 10 14 14 N 1.46896 * 113.58406 * 139.33327 * 13 12 11 15 15 C 1.46898 * 110.99777 * 107.28072 * 14 13 12 16 16 C 1.50703 * 109.47022 * 180.02562 * 15 14 13 17 17 O 1.21288 * 119.99928 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00055 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00297 * 179.97438 * 18 16 15 20 20 H 1.08010 * 119.99638 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00534 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99838 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00383 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47130 * 89.99615 * 23 21 19 25 25 H 1.48501 * 109.47428 * 210.00128 * 23 21 19 26 26 H 1.48511 * 109.47026 * 329.99997 * 23 21 19 27 27 C 1.52909 * 121.13552 * 259.17751 * 11 10 9 28 28 C 1.52902 * 88.04112 * 24.89849 * 11 10 9 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97009 * 120.00071 * 359.97438 * 8 6 3 35 35 H 1.09007 * 112.82397 * 23.90740 * 9 8 6 36 36 H 1.08999 * 113.66459 * 335.13120 * 10 9 8 37 37 H 1.09002 * 113.66916 * 106.18778 * 10 9 8 38 38 H 1.08995 * 113.65940 * 215.29179 * 12 11 10 39 39 H 1.09005 * 113.66441 * 346.34256 * 12 11 10 40 40 H 1.09004 * 113.64703 * 270.12341 * 13 12 11 41 41 H 1.00897 * 111.00365 * 231.23428 * 14 13 12 42 42 H 1.09000 * 109.47618 * 300.00281 * 15 14 13 43 43 H 1.09003 * 109.47370 * 60.00504 * 15 14 13 44 44 H 0.97005 * 120.00049 * 359.97438 * 18 16 15 45 45 H 0.96995 * 120.00037 * 180.02562 * 22 21 19 46 46 H 1.09000 * 113.66572 * 13.64990 * 27 11 10 47 47 H 1.09000 * 113.66236 * 144.70996 * 27 11 10 48 48 H 1.09002 * 113.66055 * 220.62784 * 28 11 10 49 49 H 1.09001 * 113.66430 * 89.57474 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 9 1.6699 2.0681 -1.1954 6 6 3.5419 1.4443 0.1238 7 8 4.2064 0.6811 -0.5446 8 7 4.1467 2.2940 0.9774 9 6 5.6067 2.2962 1.0974 10 6 6.1176 1.6771 2.4110 11 6 7.1437 2.8103 2.4455 12 6 7.6837 3.3478 3.7713 13 6 8.9372 2.4940 3.5072 14 7 10.1933 3.1692 3.8597 15 6 10.7757 2.5942 5.0795 16 6 12.0596 3.3110 5.4094 17 8 12.4511 4.2120 4.6980 18 7 12.7733 2.9503 6.4942 19 6 13.9416 3.6021 6.7941 20 1 14.2902 4.4044 6.1605 21 6 14.6777 3.2299 7.9122 22 7 14.2542 2.2527 8.6822 23 14 16.2691 4.1185 8.3211 24 1 15.9771 5.2750 9.2057 25 1 17.1929 3.1854 9.0147 26 1 16.9024 4.6016 7.0676 27 6 8.5911 2.5800 2.0095 28 6 6.1822 3.6363 1.5904 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.6153 2.9047 1.5119 35 1 6.1046 1.9085 0.2086 36 1 5.3934 1.7177 3.2246 37 1 6.5610 0.6892 2.2857 38 1 7.8755 4.4207 3.7627 39 1 7.1100 3.0256 4.6403 40 1 8.8718 1.4842 3.9125 41 1 10.8498 3.1343 3.0944 42 1 10.0740 2.7078 5.9058 43 1 10.9809 1.5356 4.9201 44 1 12.4604 2.2295 7.0630 45 1 14.7679 1.9932 9.4629 46 1 8.7422 1.6444 1.4712 47 1 9.0379 3.4372 1.5058 48 1 6.6771 4.2137 0.8094 49 1 5.4761 4.2277 2.1733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121556779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:58 Heat of formation + Delta-G solvation = -88.268871 kcal Electronic energy + Delta-G solvation = -28538.303416 eV Core-core repulsion = 24222.627316 eV Total energy + Delta-G solvation = -4315.676100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.37205 -41.07615 -39.64039 -38.20675 -36.48701 -34.52176 -34.23333 -33.70069 -31.96673 -31.16106 -28.32596 -26.68363 -26.19654 -25.84047 -24.27842 -23.49792 -22.15014 -21.07725 -20.57988 -19.27674 -18.43987 -17.98814 -17.82722 -17.37305 -16.67977 -16.25931 -15.91494 -15.57338 -15.34609 -15.25119 -14.99816 -14.67132 -14.47491 -14.32201 -13.96321 -13.67076 -13.44571 -13.22259 -13.01272 -12.94925 -12.84341 -12.70900 -12.44805 -12.23992 -12.14562 -11.78595 -11.65683 -11.56099 -11.44366 -11.38972 -11.06281 -11.03301 -10.67953 -10.39071 -10.36904 -10.23865 -10.21322 -10.03214 -9.50329 -9.49816 -8.42725 -8.04768 -7.94879 -6.41147 -3.81936 1.92576 2.48162 3.18303 3.26787 3.32738 3.85428 3.92088 3.94315 4.05041 4.06774 4.10638 4.19829 4.29665 4.32672 4.43005 4.53825 4.65702 4.76382 4.84118 4.87298 5.07761 5.10498 5.20911 5.24974 5.28440 5.33737 5.37143 5.43362 5.52525 5.58963 5.61832 5.65094 5.66333 5.76229 5.79146 5.84129 5.94617 5.99209 6.10589 6.21400 6.28129 6.37999 6.90245 7.32019 7.55721 7.58976 7.69750 8.07244 8.62177 9.18624 9.55293 10.06881 10.76643 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.041830 B = 0.001406 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.223148 B =19913.874519 C =20219.634473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.083 3.917 4 H 0.100 0.900 5 F -0.190 7.190 6 C 0.491 3.509 7 O -0.519 6.519 8 N -0.711 5.711 9 C 0.120 3.880 10 C -0.125 4.125 11 C -0.103 4.103 12 C -0.107 4.107 13 C 0.062 3.938 14 N -0.656 5.656 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.118 4.118 28 C -0.128 4.128 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.403 0.597 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.350 0.650 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.068 0.932 47 H 0.095 0.905 48 H 0.078 0.922 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.983 -4.179 -13.160 31.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.043 3.957 4 H 0.118 0.882 5 F -0.171 7.171 6 C 0.275 3.725 7 O -0.394 6.394 8 N -0.362 5.362 9 C 0.016 3.984 10 C -0.164 4.164 11 C -0.104 4.104 12 C -0.146 4.146 13 C -0.049 4.049 14 N -0.289 5.289 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.156 4.156 28 C -0.166 4.166 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.238 0.762 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.170 0.830 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.113 0.887 48 H 0.096 0.904 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -27.433 -3.686 -13.662 30.867 hybrid contribution 0.677 -0.567 0.670 1.109 sum -26.756 -4.253 -12.992 30.046 Atomic orbital electron populations 1.21780 0.94019 1.02798 1.02534 1.21998 0.97380 0.93423 1.05161 1.21657 0.91973 0.96448 0.85608 0.88248 1.92894 1.92025 1.83872 1.48260 1.21039 0.90382 0.80968 0.80126 1.90749 1.66076 1.38915 1.43635 1.46123 1.08199 1.39118 1.42734 1.22691 0.78772 0.97984 0.98984 1.23185 0.97577 0.98290 0.97330 1.22056 0.93341 0.97037 0.97984 1.22892 0.95550 1.01112 0.95010 1.22997 0.90861 0.95997 0.95006 1.60235 1.06009 1.56092 1.06542 1.21729 0.96259 0.96049 0.94234 1.19847 0.86401 0.87156 0.83983 1.90518 1.71636 1.32940 1.51693 1.41870 1.21431 1.33323 1.23476 1.19711 0.98059 1.15913 1.09230 0.87935 1.25256 0.99856 0.96815 0.96000 1.69613 1.40037 1.28462 1.16258 0.85859 0.80926 0.78774 0.78730 1.20396 1.20948 1.19426 1.22987 0.93671 1.02458 0.96477 1.23175 0.98333 0.95674 0.99428 0.92286 0.91593 0.91886 0.89710 0.89382 0.76215 0.86614 0.89371 0.90742 0.88785 0.91796 0.91238 0.82980 0.89714 0.93945 0.77478 0.91900 0.91352 0.88702 0.90358 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.83 37.16 0.37 -0.27 16 2 C -0.14 -0.79 5.41 -26.73 -0.14 -0.93 16 3 C 0.08 0.50 3.77 -27.88 -0.11 0.39 16 4 H 0.10 0.26 8.00 -51.93 -0.42 -0.15 16 5 F -0.19 -1.62 16.75 2.25 0.04 -1.59 16 6 C 0.49 4.18 7.17 -10.99 -0.08 4.11 16 7 O -0.52 -6.60 16.21 5.56 0.09 -6.51 16 8 N -0.71 -4.50 5.35 -52.86 -0.28 -4.78 16 9 C 0.12 0.92 4.24 -66.96 -0.28 0.63 16 10 C -0.13 -0.95 7.64 -26.28 -0.20 -1.15 16 11 C -0.10 -0.87 1.11 -154.71 -0.17 -1.04 16 12 C -0.11 -1.12 7.64 -26.28 -0.20 -1.32 16 13 C 0.06 0.74 4.14 -66.73 -0.28 0.46 16 14 N -0.66 -10.45 6.18 -106.95 -0.66 -11.11 16 15 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 16 C 0.44 10.46 7.82 -10.99 -0.09 10.37 16 17 O -0.58 -15.94 15.78 5.55 0.09 -15.85 16 18 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 19 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 23 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.12 -1.17 7.41 -26.28 -0.19 -1.37 16 28 C -0.13 -0.90 7.59 -26.29 -0.20 -1.10 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.30 7.94 -51.93 -0.41 -0.12 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.63 8.05 -51.93 -0.42 0.22 16 34 H 0.40 1.35 8.62 -40.82 -0.35 1.00 16 35 H 0.12 1.12 7.47 -51.92 -0.39 0.73 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 41 H 0.35 5.78 8.25 -39.29 -0.32 5.45 16 42 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 44 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 LS Contribution 409.79 15.07 6.18 6.18 Total: -1.00 -33.83 409.79 -8.80 -42.63 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -8.04 Total: 11.68 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.85 Total: 1.59 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.28 Total: -54.20 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.18 Total: -22.36 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.83 -8.80 -42.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121556779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.636 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds