Wall clock time and date at job start Wed Apr 1 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 F 1.39904 * 109.47494 * 295.00470 * 3 2 1 6 6 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 7 7 O 1.21279 * 119.99856 * 45.00230 * 6 3 2 8 8 N 1.34773 * 120.00340 * 225.00341 * 6 3 2 9 9 C 1.46492 * 120.00436 * 180.02562 * 8 6 3 10 10 C 1.53945 * 113.58128 * 252.72197 * 9 8 6 11 11 C 1.52914 * 86.78130 * 220.65886 * 10 9 8 12 12 C 1.52910 * 121.13453 * 150.61931 * 11 10 9 13 13 C 1.53948 * 86.78642 * 100.81880 * 12 11 10 14 14 N 1.46896 * 113.58406 * 139.33327 * 13 12 11 15 15 C 1.46898 * 110.99777 * 107.28072 * 14 13 12 16 16 C 1.50703 * 109.47022 * 180.02562 * 15 14 13 17 17 O 1.21288 * 119.99928 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00055 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00297 * 179.97438 * 18 16 15 20 20 H 1.08010 * 119.99638 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00534 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99838 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00383 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47130 * 89.99615 * 23 21 19 25 25 H 1.48501 * 109.47428 * 210.00128 * 23 21 19 26 26 H 1.48511 * 109.47026 * 329.99997 * 23 21 19 27 27 C 1.52909 * 121.13552 * 259.17751 * 11 10 9 28 28 C 1.52902 * 88.04112 * 24.89849 * 11 10 9 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.97009 * 120.00071 * 359.97438 * 8 6 3 35 35 H 1.09007 * 112.82397 * 23.90740 * 9 8 6 36 36 H 1.08999 * 113.66459 * 335.13120 * 10 9 8 37 37 H 1.09002 * 113.66916 * 106.18778 * 10 9 8 38 38 H 1.08995 * 113.65940 * 215.29179 * 12 11 10 39 39 H 1.09005 * 113.66441 * 346.34256 * 12 11 10 40 40 H 1.09004 * 113.64703 * 270.12341 * 13 12 11 41 41 H 1.00897 * 111.00365 * 231.23428 * 14 13 12 42 42 H 1.09000 * 109.47618 * 300.00281 * 15 14 13 43 43 H 1.09003 * 109.47370 * 60.00504 * 15 14 13 44 44 H 0.97005 * 120.00049 * 359.97438 * 18 16 15 45 45 H 0.96995 * 120.00037 * 180.02562 * 22 21 19 46 46 H 1.09000 * 113.66572 * 13.64990 * 27 11 10 47 47 H 1.09000 * 113.66236 * 144.70996 * 27 11 10 48 48 H 1.09002 * 113.66055 * 220.62784 * 28 11 10 49 49 H 1.09001 * 113.66430 * 89.57474 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 9 1.6699 2.0681 -1.1954 6 6 3.5419 1.4443 0.1238 7 8 4.2064 0.6811 -0.5446 8 7 4.1467 2.2940 0.9774 9 6 5.6067 2.2962 1.0974 10 6 6.1176 1.6771 2.4110 11 6 7.1437 2.8103 2.4455 12 6 7.6837 3.3478 3.7713 13 6 8.9372 2.4940 3.5072 14 7 10.1933 3.1692 3.8597 15 6 10.7757 2.5942 5.0795 16 6 12.0596 3.3110 5.4094 17 8 12.4511 4.2120 4.6980 18 7 12.7733 2.9503 6.4942 19 6 13.9416 3.6021 6.7941 20 1 14.2902 4.4044 6.1605 21 6 14.6777 3.2299 7.9122 22 7 14.2542 2.2527 8.6822 23 14 16.2691 4.1185 8.3211 24 1 15.9771 5.2750 9.2057 25 1 17.1929 3.1854 9.0147 26 1 16.9024 4.6016 7.0676 27 6 8.5911 2.5800 2.0095 28 6 6.1822 3.6363 1.5904 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.6153 2.9047 1.5119 35 1 6.1046 1.9085 0.2086 36 1 5.3934 1.7177 3.2246 37 1 6.5610 0.6892 2.2857 38 1 7.8755 4.4207 3.7627 39 1 7.1100 3.0256 4.6403 40 1 8.8718 1.4842 3.9125 41 1 10.8498 3.1343 3.0944 42 1 10.0740 2.7078 5.9058 43 1 10.9809 1.5356 4.9201 44 1 12.4604 2.2295 7.0630 45 1 14.7679 1.9932 9.4629 46 1 8.7422 1.6444 1.4712 47 1 9.0379 3.4372 1.5058 48 1 6.6771 4.2137 0.8094 49 1 5.4761 4.2277 2.1733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121556779.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:57 Heat of formation + Delta-G solvation = -112.761583 kcal Electronic energy + Delta-G solvation = -28539.365500 eV Core-core repulsion = 24222.627316 eV Total energy + Delta-G solvation = -4316.738184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -48.94092 -41.79472 -40.43355 -40.00938 -37.43373 -36.00373 -35.02741 -34.83369 -33.31070 -32.82321 -28.87352 -28.19460 -26.79884 -26.75838 -25.88751 -24.27638 -22.75767 -21.68083 -21.43402 -21.09915 -19.92546 -19.10167 -18.58957 -17.95161 -17.78944 -17.27628 -16.86887 -16.63217 -16.46583 -16.32021 -16.10166 -15.79240 -15.67018 -15.30835 -15.20399 -14.76944 -14.43820 -14.07393 -13.94690 -13.85315 -13.66608 -13.49189 -13.37051 -13.25974 -13.11095 -12.97396 -12.89116 -12.81955 -12.42639 -12.34927 -12.12328 -12.03156 -11.88075 -11.84578 -11.52314 -11.49490 -11.09636 -10.97475 -10.76542 -10.31578 -10.12427 -10.01936 -9.29822 -8.46959 -5.95902 1.27933 1.38071 1.41863 1.54639 1.92881 2.04878 2.29326 2.95610 3.20351 3.36195 3.41345 3.46526 3.50799 3.61124 3.65127 3.68828 3.78967 3.90445 3.92200 4.02116 4.29686 4.36385 4.41470 4.43954 4.48836 4.50749 4.59156 4.73394 4.77653 4.79754 4.87110 4.97459 4.98017 5.01638 5.03791 5.07124 5.14427 5.18217 5.34336 5.36885 5.40765 5.49187 5.54193 5.94166 6.19453 6.37842 6.43134 6.59960 7.03864 7.12229 7.55790 8.11165 8.70427 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.041830 B = 0.001406 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.223148 B =19913.874519 C =20219.634473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.083 3.917 4 H 0.144 0.856 5 F -0.205 7.205 6 C 0.487 3.513 7 O -0.570 6.570 8 N -0.694 5.694 9 C 0.119 3.881 10 C -0.117 4.117 11 C -0.094 4.094 12 C -0.103 4.103 13 C 0.054 3.946 14 N -0.670 5.670 15 C 0.066 3.934 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.273 1.273 27 C -0.117 4.117 28 C -0.118 4.118 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.421 0.579 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.343 0.657 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.072 0.928 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.791 -4.116 -12.009 32.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C 0.044 3.956 4 H 0.161 0.839 5 F -0.186 7.186 6 C 0.272 3.728 7 O -0.448 6.448 8 N -0.346 5.346 9 C 0.014 3.986 10 C -0.156 4.156 11 C -0.095 4.095 12 C -0.142 4.142 13 C -0.055 4.055 14 N -0.302 5.302 15 C -0.067 4.067 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.155 4.155 28 C -0.156 4.156 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.259 0.741 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.162 0.838 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.093 0.907 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -29.290 -3.616 -12.477 32.041 hybrid contribution 1.224 -0.592 0.290 1.390 sum -28.066 -4.208 -12.187 30.886 Atomic orbital electron populations 1.21768 0.92702 1.03304 1.03003 1.22000 0.98435 0.93096 1.04447 1.21889 0.90239 0.97242 0.86218 0.83888 1.92863 1.91979 1.84167 1.49593 1.21548 0.91436 0.80323 0.79517 1.90729 1.67357 1.41058 1.45681 1.46002 1.07824 1.38636 1.42149 1.22514 0.79433 0.98402 0.98210 1.23177 0.97375 0.97401 0.97617 1.21927 0.92853 0.97915 0.96851 1.22826 0.94847 1.00032 0.96453 1.23200 0.89374 0.96450 0.96514 1.60285 1.06979 1.57187 1.05716 1.21584 0.93242 0.96182 0.95685 1.20923 0.87617 0.86464 0.82565 1.90485 1.73054 1.34793 1.52716 1.41938 1.21275 1.33526 1.24280 1.19681 0.99956 1.16722 1.10188 0.90362 1.26033 1.02589 0.97289 0.95240 1.69671 1.41099 1.28899 1.16418 0.84928 0.77102 0.77988 0.78314 1.19599 1.19489 1.19804 1.22953 0.94881 1.02421 0.95224 1.23166 0.98029 0.95330 0.99083 0.90453 0.91147 0.92714 0.88771 0.91865 0.74079 0.88971 0.87575 0.91567 0.90149 0.90682 0.90412 0.83790 0.88016 0.91846 0.76981 0.91284 0.90959 0.89439 0.90712 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.83 71.98 0.71 -0.26 16 2 C -0.14 -1.42 5.41 30.59 0.17 -1.26 16 3 C 0.08 0.85 3.77 29.85 0.11 0.97 16 4 H 0.14 0.21 8.00 -2.38 -0.02 0.19 16 5 F -0.21 -3.30 16.75 44.97 0.75 -2.55 16 6 C 0.49 7.77 7.17 87.66 0.63 8.40 16 7 O -0.57 -14.76 16.21 -3.03 -0.05 -14.81 16 8 N -0.69 -7.27 5.35 -439.54 -2.35 -9.63 16 9 C 0.12 1.64 4.24 45.63 0.19 1.83 16 10 C -0.12 -1.52 7.64 30.88 0.24 -1.28 16 11 C -0.09 -1.42 1.11 -52.31 -0.06 -1.48 16 12 C -0.10 -1.95 7.64 30.88 0.24 -1.72 16 13 C 0.05 1.22 4.14 45.55 0.19 1.41 16 14 N -0.67 -20.98 6.18 -492.27 -3.04 -24.02 16 15 C 0.07 2.26 6.01 85.56 0.51 2.77 16 16 C 0.44 21.00 7.82 87.66 0.69 21.69 16 17 O -0.62 -34.98 15.78 -3.06 -0.05 -35.03 16 18 N -0.57 -29.65 5.29 -306.98 -1.62 -31.28 16 19 C -0.34 -19.24 9.68 84.04 0.81 -18.43 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 22 N -0.92 -49.69 13.05 21.66 0.28 -49.40 16 23 Si 0.99 43.01 29.55 68.60 2.03 45.03 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 27 C -0.12 -2.23 7.41 30.89 0.23 -2.00 16 28 C -0.12 -1.40 7.59 30.88 0.23 -1.17 16 29 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.45 7.94 -2.38 -0.02 0.43 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.95 8.05 -2.39 -0.02 0.93 16 34 H 0.42 1.35 8.62 -92.70 -0.80 0.55 16 35 H 0.09 1.77 7.47 -2.38 -0.02 1.76 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.08 1.65 7.87 -2.38 -0.02 1.63 16 41 H 0.34 11.43 8.25 -89.70 -0.74 10.69 16 42 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 44 H 0.40 19.43 7.90 -92.70 -0.73 18.69 16 45 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 46 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 47 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.11 0.88 8.12 -2.39 -0.02 0.86 16 Total: -1.00 -75.38 409.79 0.01 -75.37 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -1.29 Total: 37.01 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.35 Total: 9.30 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -6.74 Total: -114.33 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -0.10 Total: -49.84 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.75 Total: -2.55 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -75.38 0.01 -75.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121556779.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.390 kcal (2) G-P(sol) polarization free energy of solvation -75.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds