Wall clock time and date at job start Wed Apr 1 2020 01:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47262 * 2 1 4 4 C 1.52999 * 109.47214 * 119.99614 * 2 1 3 5 5 H 1.08990 * 109.47582 * 305.31970 * 4 2 1 6 6 F 1.39906 * 109.46920 * 185.31907 * 4 2 1 7 7 C 1.50699 * 109.46827 * 65.32358 * 4 2 1 8 8 O 1.21281 * 120.00551 * 64.80160 * 7 4 2 9 9 N 1.34783 * 119.99640 * 245.07363 * 7 4 2 10 10 C 1.47289 * 135.91739 * 359.35547 * 9 7 4 11 11 C 1.52536 * 87.57380 * 153.99735 * 10 9 7 12 12 C 1.47294 * 135.91452 * 179.72708 * 9 7 4 13 13 C 1.53128 * 116.54327 * 268.65461 * 11 10 9 14 14 C 1.54692 * 104.56188 * 228.35864 * 13 11 10 15 15 N 1.48661 * 104.66260 * 23.67975 * 14 13 11 16 16 C 1.46893 * 110.99799 * 201.53348 * 15 14 13 17 17 C 1.50700 * 109.47555 * 290.12542 * 16 15 14 18 18 O 1.21301 * 119.99663 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00435 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00227 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99785 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00263 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99787 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47149 * 120.00210 * 24 22 20 27 27 H 1.48499 * 109.47200 * 240.00347 * 24 22 20 28 28 C 1.48849 * 104.43217 * 321.21747 * 15 14 13 29 29 H 1.09004 * 109.47300 * 299.99903 * 1 2 3 30 30 H 1.08998 * 109.47572 * 59.99992 * 1 2 3 31 31 H 1.08999 * 109.47114 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47300 * 240.00097 * 2 1 3 33 33 H 1.08998 * 109.47334 * 65.01589 * 3 2 1 34 34 H 1.08994 * 109.47598 * 185.02406 * 3 2 1 35 35 H 1.09008 * 109.46572 * 305.01946 * 3 2 1 36 36 H 1.08997 * 113.51861 * 268.65487 * 10 9 7 37 37 H 1.09002 * 113.51631 * 39.25426 * 10 9 7 38 38 H 1.09005 * 113.52101 * 320.74363 * 12 9 7 39 39 H 1.08999 * 113.52231 * 91.28220 * 12 9 7 40 40 H 1.09003 * 110.41817 * 347.12602 * 13 11 10 41 41 H 1.08993 * 110.41897 * 109.58844 * 13 11 10 42 42 H 1.09002 * 110.39751 * 142.47472 * 14 13 11 43 43 H 1.09002 * 110.39918 * 264.76406 * 14 13 11 44 44 H 1.09001 * 109.47388 * 50.13034 * 16 15 14 45 45 H 1.09004 * 109.46871 * 170.12604 * 16 15 14 46 46 H 0.97003 * 119.99653 * 359.97438 * 19 17 16 47 47 H 0.97004 * 119.99851 * 179.97438 * 23 22 20 48 48 H 1.09000 * 110.47165 * 279.67149 * 28 15 14 49 49 H 1.09001 * 110.46912 * 157.06940 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6010 -0.2653 2.1366 6 9 3.4336 -0.6162 1.3120 7 6 1.6481 -2.1749 1.1852 8 8 2.1054 -2.8886 0.3177 9 7 0.7852 -2.6807 2.0886 10 6 0.0455 -2.1611 3.2515 11 6 -0.9840 -3.2594 3.0057 12 6 0.1751 -3.9960 2.3480 13 6 -2.1643 -2.9004 2.0986 14 6 -3.4124 -3.3818 2.8754 15 7 -2.9829 -3.4081 4.2984 16 6 -3.8408 -4.2992 5.0907 17 6 -5.2111 -3.6870 5.2270 18 8 -5.4494 -2.6136 4.7147 19 7 -6.1714 -4.3316 5.9188 20 6 -7.4182 -3.7749 6.0422 21 1 -7.6306 -2.8196 5.5855 22 6 -8.4084 -4.4397 6.7550 23 7 -8.1497 -5.6019 7.3112 24 14 -10.1070 -3.6809 6.9239 25 1 -10.1401 -2.3781 6.2118 26 1 -11.1179 -4.5936 6.3323 27 1 -10.4133 -3.4678 8.3612 28 6 -1.5839 -3.9147 4.2543 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.7519 1.9298 0.9315 34 1 3.1262 1.4439 -0.0900 35 1 1.6050 1.9816 -0.8417 36 1 0.5828 -2.2714 4.1934 37 1 -0.3462 -1.1547 3.1035 38 1 -0.1078 -4.5307 1.4412 39 1 0.7487 -4.6127 3.0400 40 1 -2.2076 -1.8229 1.9395 41 1 -2.0844 -3.4234 1.1457 42 1 -4.2371 -2.6820 2.7404 43 1 -3.7036 -4.3792 2.5460 44 1 -3.9221 -5.2644 4.5909 45 1 -3.4049 -4.4380 6.0801 46 1 -5.9807 -5.1898 6.3287 47 1 -8.8410 -6.0658 7.8092 48 1 -1.5745 -5.0003 4.1571 49 1 -1.0385 -3.6062 5.1462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148060209.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:09 Heat of formation + Delta-G solvation = -78.701249 kcal Electronic energy + Delta-G solvation = -30225.668987 eV Core-core repulsion = 25910.407770 eV Total energy + Delta-G solvation = -4315.261217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.21693 -41.33084 -39.12774 -38.20986 -36.49809 -35.93816 -33.91182 -31.81787 -31.18135 -29.91648 -28.39286 -27.50574 -27.01366 -26.43390 -25.14422 -23.94987 -21.48948 -21.22134 -20.04284 -19.35483 -18.74009 -17.98602 -17.83928 -16.98988 -16.53063 -16.20546 -15.88979 -15.58323 -15.37088 -15.06356 -14.61054 -14.55759 -14.42013 -14.11897 -13.81661 -13.71999 -13.47114 -13.18672 -13.13063 -13.08120 -12.66531 -12.57571 -12.45514 -12.28873 -11.93044 -11.65788 -11.58981 -11.52241 -11.51389 -11.36297 -11.21076 -11.15455 -11.06398 -10.87141 -10.53182 -10.36356 -10.24965 -9.98655 -9.52705 -9.10352 -8.55843 -8.08014 -7.97440 -6.44136 -3.84900 2.07134 2.28549 3.14310 3.25135 3.31932 3.66136 3.81854 3.88182 3.93182 4.07187 4.21752 4.24290 4.30290 4.38488 4.61722 4.69002 4.75691 4.96875 5.01261 5.05117 5.07578 5.12175 5.21605 5.23245 5.24484 5.25127 5.32506 5.40449 5.42483 5.43992 5.54747 5.58860 5.63793 5.71696 5.76235 5.80515 5.81707 5.84307 5.88872 6.07853 6.23628 6.37533 7.01962 7.12771 7.26013 7.53080 7.65262 8.03931 8.59206 9.15998 9.52114 10.03702 10.73677 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.024968 B = 0.001991 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.161805 B =14059.065770 C =14702.222110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.147 4.147 4 C 0.091 3.909 5 H 0.100 0.900 6 F -0.188 7.188 7 C 0.524 3.476 8 O -0.525 6.525 9 N -0.640 5.640 10 C 0.112 3.888 11 C -0.095 4.095 12 C 0.116 3.884 13 C -0.096 4.096 14 C 0.038 3.962 15 N -0.483 5.483 16 C 0.034 3.966 17 C 0.445 3.555 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.046 3.954 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.039 0.961 44 H 0.050 0.950 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.052 0.948 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.923 6.162 -9.522 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.204 4.204 4 C 0.052 3.948 5 H 0.117 0.883 6 F -0.169 7.169 7 C 0.311 3.689 8 O -0.400 6.400 9 N -0.376 5.376 10 C -0.010 4.010 11 C -0.097 4.097 12 C -0.006 4.006 13 C -0.133 4.133 14 C -0.090 4.090 15 N -0.206 5.206 16 C -0.098 4.098 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.082 4.082 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.028 7.008 -10.134 22.669 hybrid contribution -0.579 -1.231 0.281 1.389 sum 18.449 5.777 -9.853 21.698 Atomic orbital electron populations 1.21842 0.93122 1.02700 1.03132 1.21638 0.97490 0.97372 0.96845 1.21815 1.01830 0.94135 1.02651 1.21560 0.77640 0.93375 1.02212 0.88257 1.92873 1.29571 1.96660 1.97752 1.20469 0.77604 0.89712 0.81079 1.90743 1.52854 1.61032 1.35410 1.49758 1.44536 1.14264 1.29008 1.23202 0.89745 0.99529 0.88563 1.22104 0.93927 0.96574 0.97061 1.23003 0.90781 0.86791 1.00041 1.22009 0.92157 1.02136 0.97038 1.23245 0.97846 1.00777 0.87115 1.65214 0.99953 1.45790 1.09672 1.22067 0.94344 0.94147 0.99214 1.19682 0.85590 0.87275 0.84447 1.90506 1.81747 1.22524 1.51410 1.41871 1.10443 1.20972 1.46936 1.19733 0.86447 1.05323 1.31181 0.87874 1.25261 1.00211 0.95860 0.96691 1.69618 1.35026 1.14478 1.35219 0.85809 0.81458 0.79139 0.77995 1.19226 1.20799 1.20749 1.22891 0.91233 0.97571 0.96548 0.91783 0.91200 0.92178 0.89058 0.92131 0.91824 0.91521 0.88821 0.89497 0.89961 0.89200 0.90404 0.91062 0.88053 0.94245 0.93174 0.89210 0.77523 0.91935 0.93016 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.01 37.15 0.33 -0.75 16 2 C -0.11 -0.92 2.72 -90.62 -0.25 -1.17 16 3 C -0.15 -0.95 8.94 37.16 0.33 -0.62 16 4 C 0.09 0.85 3.32 -27.88 -0.09 0.76 16 5 H 0.10 0.69 7.38 -51.93 -0.38 0.31 16 6 F -0.19 -2.13 16.44 2.25 0.04 -2.09 16 7 C 0.52 6.09 6.18 -10.98 -0.07 6.02 16 8 O -0.52 -8.17 17.76 5.56 0.10 -8.07 16 9 N -0.64 -6.12 3.68 -185.19 -0.68 -6.80 16 10 C 0.11 0.86 7.25 -7.65 -0.06 0.80 16 11 C -0.10 -0.85 1.29 -154.93 -0.20 -1.05 16 12 C 0.12 1.01 7.92 -7.78 -0.06 0.95 16 13 C -0.10 -0.99 6.53 -25.77 -0.17 -1.16 16 14 C 0.04 0.53 5.82 -1.96 -0.01 0.52 16 15 N -0.48 -7.04 5.06 -231.59 -1.17 -8.21 16 16 C 0.03 0.56 5.30 -4.98 -0.03 0.53 16 17 C 0.44 10.00 7.58 -10.99 -0.08 9.91 16 18 O -0.58 -14.89 14.43 5.54 0.08 -14.81 16 19 N -0.57 -13.86 5.29 -10.96 -0.06 -13.91 16 20 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 24 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.05 0.47 5.95 -2.61 -0.02 0.45 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.51 7.39 -51.93 -0.38 0.12 16 32 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.44 7.84 -51.93 -0.41 0.04 16 35 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 36 H 0.09 0.59 7.99 -51.93 -0.41 0.17 16 37 H 0.09 0.61 7.85 -51.93 -0.41 0.20 16 38 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.79 7.85 -51.93 -0.41 0.39 16 41 H 0.07 0.69 7.83 -51.93 -0.41 0.28 16 42 H 0.10 1.75 6.93 -51.93 -0.36 1.39 16 43 H 0.04 0.55 7.82 -51.93 -0.41 0.14 16 44 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 45 H 0.09 1.32 8.13 -51.93 -0.42 0.90 16 46 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 47 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 48 H 0.05 0.48 7.98 -51.93 -0.41 0.07 16 49 H 0.09 0.78 7.86 -51.93 -0.41 0.37 16 LS Contribution 400.37 15.07 6.03 6.03 Total: -1.00 -33.14 400.37 -8.57 -41.71 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -8.01 Total: 6.44 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.60 Total: 7.44 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -1.19 Total: -52.29 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.18 Total: -22.88 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.14 -8.57 -41.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148060209.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.988 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds