Wall clock time and date at job start Wed Apr 1 2020 01:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47262 * 2 1 4 4 C 1.52999 * 109.47214 * 119.99614 * 2 1 3 5 5 H 1.08990 * 109.47582 * 305.31970 * 4 2 1 6 6 F 1.39906 * 109.46920 * 185.31907 * 4 2 1 7 7 C 1.50699 * 109.46827 * 65.32358 * 4 2 1 8 8 O 1.21281 * 120.00551 * 64.80160 * 7 4 2 9 9 N 1.34783 * 119.99640 * 245.07363 * 7 4 2 10 10 C 1.47289 * 135.91739 * 359.35547 * 9 7 4 11 11 C 1.52536 * 87.57380 * 153.99735 * 10 9 7 12 12 C 1.47294 * 135.91452 * 179.72708 * 9 7 4 13 13 C 1.53128 * 116.54327 * 268.65461 * 11 10 9 14 14 C 1.54692 * 104.56188 * 228.35864 * 13 11 10 15 15 N 1.48661 * 104.66260 * 23.67975 * 14 13 11 16 16 C 1.46893 * 110.99799 * 201.53348 * 15 14 13 17 17 C 1.50700 * 109.47555 * 290.12542 * 16 15 14 18 18 O 1.21301 * 119.99663 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00435 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00227 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99785 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00263 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99787 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47149 * 120.00210 * 24 22 20 27 27 H 1.48499 * 109.47200 * 240.00347 * 24 22 20 28 28 C 1.48849 * 104.43217 * 321.21747 * 15 14 13 29 29 H 1.09004 * 109.47300 * 299.99903 * 1 2 3 30 30 H 1.08998 * 109.47572 * 59.99992 * 1 2 3 31 31 H 1.08999 * 109.47114 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47300 * 240.00097 * 2 1 3 33 33 H 1.08998 * 109.47334 * 65.01589 * 3 2 1 34 34 H 1.08994 * 109.47598 * 185.02406 * 3 2 1 35 35 H 1.09008 * 109.46572 * 305.01946 * 3 2 1 36 36 H 1.08997 * 113.51861 * 268.65487 * 10 9 7 37 37 H 1.09002 * 113.51631 * 39.25426 * 10 9 7 38 38 H 1.09005 * 113.52101 * 320.74363 * 12 9 7 39 39 H 1.08999 * 113.52231 * 91.28220 * 12 9 7 40 40 H 1.09003 * 110.41817 * 347.12602 * 13 11 10 41 41 H 1.08993 * 110.41897 * 109.58844 * 13 11 10 42 42 H 1.09002 * 110.39751 * 142.47472 * 14 13 11 43 43 H 1.09002 * 110.39918 * 264.76406 * 14 13 11 44 44 H 1.09001 * 109.47388 * 50.13034 * 16 15 14 45 45 H 1.09004 * 109.46871 * 170.12604 * 16 15 14 46 46 H 0.97003 * 119.99653 * 359.97438 * 19 17 16 47 47 H 0.97004 * 119.99851 * 179.97438 * 23 22 20 48 48 H 1.09000 * 110.47165 * 279.67149 * 28 15 14 49 49 H 1.09001 * 110.46912 * 157.06940 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6010 -0.2653 2.1366 6 9 3.4336 -0.6162 1.3120 7 6 1.6481 -2.1749 1.1852 8 8 2.1054 -2.8886 0.3177 9 7 0.7852 -2.6807 2.0886 10 6 0.0455 -2.1611 3.2515 11 6 -0.9840 -3.2594 3.0057 12 6 0.1751 -3.9960 2.3480 13 6 -2.1643 -2.9004 2.0986 14 6 -3.4124 -3.3818 2.8754 15 7 -2.9829 -3.4081 4.2984 16 6 -3.8408 -4.2992 5.0907 17 6 -5.2111 -3.6870 5.2270 18 8 -5.4494 -2.6136 4.7147 19 7 -6.1714 -4.3316 5.9188 20 6 -7.4182 -3.7749 6.0422 21 1 -7.6306 -2.8196 5.5855 22 6 -8.4084 -4.4397 6.7550 23 7 -8.1497 -5.6019 7.3112 24 14 -10.1070 -3.6809 6.9239 25 1 -10.1401 -2.3781 6.2118 26 1 -11.1179 -4.5936 6.3323 27 1 -10.4133 -3.4678 8.3612 28 6 -1.5839 -3.9147 4.2543 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.7519 1.9298 0.9315 34 1 3.1262 1.4439 -0.0900 35 1 1.6050 1.9816 -0.8417 36 1 0.5828 -2.2714 4.1934 37 1 -0.3462 -1.1547 3.1035 38 1 -0.1078 -4.5307 1.4412 39 1 0.7487 -4.6127 3.0400 40 1 -2.2076 -1.8229 1.9395 41 1 -2.0844 -3.4234 1.1457 42 1 -4.2371 -2.6820 2.7404 43 1 -3.7036 -4.3792 2.5460 44 1 -3.9221 -5.2644 4.5909 45 1 -3.4049 -4.4380 6.0801 46 1 -5.9807 -5.1898 6.3287 47 1 -8.8410 -6.0658 7.8092 48 1 -1.5745 -5.0003 4.1571 49 1 -1.0385 -3.6062 5.1462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148060209.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:08 Heat of formation + Delta-G solvation = -102.282689 kcal Electronic energy + Delta-G solvation = -30226.691555 eV Core-core repulsion = 25910.407770 eV Total energy + Delta-G solvation = -4316.283785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.01267 -42.12853 -40.34296 -39.61235 -37.64808 -36.59740 -35.85304 -33.30995 -32.69433 -30.84284 -29.27764 -28.29146 -27.95363 -27.12760 -26.51867 -25.25947 -22.58675 -21.91697 -21.01910 -20.77396 -19.90804 -19.52047 -18.71989 -17.86499 -17.65402 -17.30311 -16.85326 -16.61061 -16.39699 -16.21383 -16.12380 -15.79109 -15.52708 -15.30404 -14.98510 -14.60998 -14.54449 -14.33723 -13.96455 -13.70558 -13.66926 -13.55155 -13.45806 -13.35330 -13.07074 -12.93682 -12.88272 -12.54335 -12.37926 -12.31484 -12.23318 -12.18618 -12.10190 -12.09488 -11.92892 -11.70343 -11.45679 -11.30754 -10.84915 -10.25779 -9.97229 -9.87596 -9.30414 -8.44185 -5.92077 1.22901 1.37850 1.43120 1.53642 1.56805 2.10524 2.30308 2.79913 3.01066 3.22000 3.23132 3.27960 3.43079 3.59532 3.62686 3.73206 3.76695 3.94546 4.08714 4.26780 4.31292 4.36392 4.39979 4.45726 4.46587 4.52318 4.57694 4.58285 4.65733 4.71434 4.73478 4.75904 4.82542 4.87491 4.91859 4.93341 4.98770 5.08545 5.17345 5.24146 5.27642 5.30918 5.43869 5.88860 5.96571 6.12947 6.48783 6.64348 6.81724 7.16834 7.61240 8.17253 8.73461 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.024968 B = 0.001991 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.161805 B =14059.065770 C =14702.222110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.090 3.910 5 H 0.129 0.871 6 F -0.201 7.201 7 C 0.519 3.481 8 O -0.576 6.576 9 N -0.638 5.638 10 C 0.114 3.886 11 C -0.088 4.088 12 C 0.115 3.885 13 C -0.086 4.086 14 C 0.038 3.962 15 N -0.503 5.503 16 C 0.047 3.953 17 C 0.442 3.558 18 O -0.615 6.615 19 N -0.578 5.578 20 C -0.328 4.328 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.272 1.272 28 C 0.051 3.949 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.069 0.931 45 H 0.114 0.886 46 H 0.396 0.604 47 H 0.276 0.724 48 H 0.066 0.934 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.745 6.461 -8.493 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.201 4.201 4 C 0.051 3.949 5 H 0.147 0.853 6 F -0.182 7.182 7 C 0.308 3.692 8 O -0.455 6.455 9 N -0.372 5.372 10 C -0.007 4.007 11 C -0.089 4.089 12 C -0.007 4.007 13 C -0.124 4.124 14 C -0.090 4.090 15 N -0.227 5.227 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.501 6.501 19 N -0.216 5.216 20 C -0.457 4.457 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.198 1.198 27 H -0.197 1.197 28 C -0.077 4.077 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.137 0.863 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.132 0.868 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 19.854 7.295 -9.074 23.016 hybrid contribution -0.832 -1.326 -0.060 1.567 sum 19.022 5.969 -9.133 21.929 Atomic orbital electron populations 1.21817 0.92330 1.01983 1.04236 1.21623 0.98056 0.97996 0.95502 1.21804 1.01372 0.93088 1.03823 1.21779 0.76954 0.92173 1.03966 0.85317 1.92843 1.30846 1.96617 1.97875 1.20879 0.77346 0.90391 0.80619 1.90714 1.54982 1.62361 1.37458 1.49811 1.43530 1.14968 1.28890 1.23413 0.88902 0.99635 0.88734 1.21931 0.93421 0.97370 0.96211 1.23129 0.90707 0.86732 1.00142 1.21903 0.91194 1.02215 0.97097 1.23115 0.98303 0.99664 0.87917 1.65150 1.01846 1.46241 1.09438 1.21926 0.90884 0.94442 1.01225 1.20820 0.87365 0.86564 0.82270 1.90483 1.82931 1.24330 1.52324 1.41955 1.10325 1.21342 1.47933 1.19657 0.88376 1.05149 1.32554 0.90385 1.26002 1.03276 0.96223 0.95946 1.69675 1.36189 1.15087 1.35340 0.84903 0.77291 0.78119 0.78235 1.19799 1.19808 1.19696 1.22984 0.88364 0.98553 0.97809 0.90346 0.90470 0.93719 0.91207 0.90812 0.92551 0.90505 0.86267 0.88386 0.90782 0.87101 0.90228 0.90499 0.92147 0.94477 0.91347 0.86823 0.77070 0.91431 0.91543 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.01 71.98 0.65 -1.25 16 2 C -0.11 -1.71 2.72 -10.80 -0.03 -1.74 16 3 C -0.14 -1.64 8.94 71.98 0.64 -0.99 16 4 C 0.09 1.55 3.32 29.85 0.10 1.64 16 5 H 0.13 1.40 7.38 -2.39 -0.02 1.39 16 6 F -0.20 -4.39 16.44 44.97 0.74 -3.65 16 7 C 0.52 11.57 6.18 87.66 0.54 12.11 16 8 O -0.58 -18.13 17.76 -3.03 -0.05 -18.18 16 9 N -0.64 -10.77 3.68 -858.21 -3.16 -13.93 16 10 C 0.11 1.35 7.25 83.61 0.61 1.95 16 11 C -0.09 -1.32 1.29 -52.45 -0.07 -1.38 16 12 C 0.12 1.71 7.92 83.52 0.66 2.37 16 13 C -0.09 -1.68 6.53 31.21 0.20 -1.47 16 14 C 0.04 1.06 5.82 86.54 0.50 1.56 16 15 N -0.50 -13.77 5.06 -886.62 -4.49 -18.25 16 16 C 0.05 1.46 5.30 85.56 0.45 1.91 16 17 C 0.44 20.04 7.58 87.66 0.66 20.71 16 18 O -0.62 -32.56 14.43 -3.09 -0.04 -32.60 16 19 N -0.58 -28.73 5.29 -306.98 -1.62 -30.35 16 20 C -0.33 -18.22 9.68 84.04 0.81 -17.41 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.02 -0.79 5.50 84.93 0.47 -0.33 16 23 N -0.92 -48.98 13.05 21.66 0.28 -48.69 16 24 Si 0.99 42.36 29.55 68.60 2.03 44.38 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 C 0.05 0.85 5.95 86.01 0.51 1.36 16 29 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.72 7.39 -2.39 -0.02 0.70 16 32 H 0.07 1.36 8.06 -2.38 -0.02 1.34 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.73 7.84 -2.39 -0.02 0.71 16 35 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.12 0.91 7.99 -2.39 -0.02 0.89 16 37 H 0.10 1.00 7.85 -2.39 -0.02 0.98 16 38 H 0.07 1.25 7.93 -2.38 -0.02 1.24 16 39 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.52 7.85 -2.39 -0.02 1.51 16 41 H 0.08 1.41 7.83 -2.39 -0.02 1.40 16 42 H 0.06 2.17 6.93 -2.39 -0.02 2.15 16 43 H 0.04 1.02 7.82 -2.39 -0.02 1.00 16 44 H 0.07 1.90 7.88 -2.39 -0.02 1.88 16 45 H 0.11 3.02 8.13 -2.39 -0.02 3.00 16 46 H 0.40 18.66 7.90 -92.71 -0.73 17.92 16 47 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 48 H 0.07 0.97 7.98 -2.39 -0.02 0.95 16 49 H 0.11 1.42 7.86 -2.39 -0.02 1.40 16 Total: -1.00 -74.65 400.37 0.63 -74.02 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.22 Total: 28.20 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 6.72 Total: 19.04 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -8.99 Total: -111.22 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.10 Total: -50.78 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.74 Total: -3.65 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -74.65 0.63 -74.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148060209.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.263 kcal (2) G-P(sol) polarization free energy of solvation -74.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds