Wall clock time and date at job start Wed Apr 1 2020 01:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 H 1.08999 * 109.46879 * 55.00171 * 3 2 1 5 5 F 1.39900 * 109.46953 * 295.00235 * 3 2 1 6 6 C 1.50696 * 109.47178 * 174.99769 * 3 2 1 7 7 O 1.21280 * 120.00201 * 45.00184 * 6 3 2 8 8 N 1.34781 * 120.00062 * 225.00197 * 6 3 2 9 9 C 1.46502 * 119.99983 * 180.02562 * 8 6 3 10 10 C 1.52999 * 109.46845 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.46858 * 180.02562 * 10 9 8 12 12 C 1.29823 * 118.55903 * 94.99580 * 11 10 9 13 13 C 1.50140 * 123.28749 * 180.39016 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.93553 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47425 * 90.00231 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00087 * 23 21 19 26 26 H 1.48505 * 109.47256 * 330.00093 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50313 * 118.54933 * 274.97842 * 11 10 9 29 29 H 1.08994 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47235 * 299.99939 * 1 2 3 31 31 H 1.09001 * 109.46736 * 60.00028 * 1 2 3 32 32 H 1.09000 * 109.47235 * 240.00061 * 2 1 3 33 33 H 1.09001 * 109.47172 * 119.99660 * 2 1 3 34 34 H 0.96998 * 120.00007 * 0.02562 * 8 6 3 35 35 H 1.09004 * 109.46986 * 60.00106 * 9 8 6 36 36 H 1.08999 * 109.46852 * 300.00202 * 9 8 6 37 37 H 1.08995 * 109.47059 * 60.00112 * 10 9 8 38 38 H 1.09003 * 109.47163 * 299.99496 * 10 9 8 39 39 H 1.08001 * 118.35167 * 0.37934 * 12 11 10 40 40 H 1.08998 * 109.34082 * 222.68723 * 13 12 11 41 41 H 1.09003 * 109.33334 * 103.17518 * 13 12 11 42 42 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 43 43 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 44 44 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 45 45 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 47 47 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 48 48 H 1.09000 * 109.42632 * 283.57557 * 28 11 10 49 49 H 1.08996 * 109.43207 * 43.42603 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6699 2.0680 -1.1954 6 6 3.5419 1.4443 0.1239 7 8 4.2064 0.6811 -0.5445 8 7 4.1467 2.2941 0.9775 9 6 5.6068 2.2962 1.0976 10 6 6.0324 3.3464 2.1256 11 6 7.5344 3.3490 2.2486 12 6 8.2134 4.2018 1.5435 13 6 9.7117 4.2912 1.5773 14 7 10.2358 3.6059 2.7656 15 6 11.7041 3.5662 2.7458 16 6 12.2462 4.9667 2.8712 17 8 11.4843 5.9055 2.9681 18 7 13.5776 5.1759 2.8768 19 6 14.0708 6.4505 2.9853 20 1 13.3923 7.2865 3.0707 21 6 15.4433 6.6668 2.9853 22 7 16.2688 5.6496 2.8808 23 14 16.1152 8.4034 3.1338 24 1 16.3134 8.7366 4.5672 25 1 17.4145 8.4942 2.4203 26 1 15.1520 9.3600 2.5317 27 6 9.6724 2.2488 2.8599 28 6 8.1804 2.3642 3.1826 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6152 2.9043 1.5124 35 1 6.0505 2.5340 0.1307 36 1 5.9461 1.3122 1.4209 37 1 5.5887 3.1090 3.0925 38 1 5.6931 4.3303 1.8018 39 1 7.6733 4.8808 0.9004 40 1 10.0104 5.3391 1.6039 41 1 10.1213 3.8243 0.6815 42 1 12.0430 3.1281 1.8070 43 1 12.0624 2.9618 3.5790 44 1 14.1869 4.4251 2.7997 45 1 17.2269 5.8005 2.8811 46 1 9.8026 1.7312 1.9095 47 1 10.1771 1.6970 3.6529 48 1 8.0568 2.7048 4.2106 49 1 7.7077 1.3892 3.0651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160905026.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:16 Heat of formation + Delta-G solvation = -113.642508 kcal Electronic energy + Delta-G solvation = -28682.698679 eV Core-core repulsion = 24365.922296 eV Total energy + Delta-G solvation = -4316.776384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.34676 -40.08966 -39.30502 -37.82550 -36.05235 -34.50356 -34.21580 -33.67939 -31.26359 -30.72824 -30.42698 -28.30618 -26.83429 -24.83716 -23.70921 -23.34418 -22.40528 -21.66181 -20.97093 -19.21437 -18.27211 -17.87657 -17.52770 -17.33204 -16.55036 -16.10393 -15.95427 -15.56614 -15.36050 -14.99362 -14.85305 -14.64029 -14.37288 -14.17323 -13.94183 -13.82420 -13.71694 -13.41669 -13.06216 -13.00220 -12.81159 -12.64564 -12.44031 -12.27687 -12.06699 -11.91944 -11.64826 -11.58917 -11.48690 -11.41956 -11.26871 -11.03557 -10.82880 -10.47378 -10.38867 -10.21457 -10.16092 -9.57148 -9.48237 -8.75071 -8.45240 -7.97190 -7.81156 -6.41133 -3.81872 1.96707 2.17198 2.57318 3.18153 3.26799 3.32413 3.87721 3.90852 3.97948 4.01059 4.09285 4.25806 4.34199 4.61338 4.68513 4.71915 4.80061 4.88507 4.94122 5.09853 5.11357 5.21514 5.24637 5.33988 5.37855 5.41207 5.53408 5.54525 5.56210 5.64420 5.66695 5.71766 5.74837 5.82060 5.90417 5.97101 6.00101 6.14629 6.26625 6.38315 6.52880 6.89341 6.99770 7.35740 7.38322 7.55785 7.60672 8.07217 8.62706 9.18872 9.55326 10.07236 10.76641 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.035548 B = 0.001496 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.474246 B =18707.760530 C =19023.883156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.084 3.916 4 H 0.100 0.900 5 F -0.189 7.189 6 C 0.489 3.511 7 O -0.519 6.519 8 N -0.722 5.722 9 C 0.121 3.879 10 C -0.091 4.091 11 C -0.134 4.134 12 C -0.127 4.127 13 C 0.075 3.925 14 N -0.509 5.509 15 C 0.044 3.956 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.049 3.951 28 C -0.072 4.072 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.403 0.597 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.038 0.962 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.034 0.966 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.137 -12.004 -2.111 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.044 3.956 4 H 0.118 0.882 5 F -0.170 7.170 6 C 0.272 3.728 7 O -0.393 6.393 8 N -0.374 5.374 9 C -0.002 4.002 10 C -0.129 4.129 11 C -0.135 4.135 12 C -0.146 4.146 13 C -0.052 4.052 14 N -0.233 5.233 15 C -0.087 4.087 16 C 0.229 3.771 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.079 4.079 28 C -0.109 4.109 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.238 0.762 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.052 0.948 47 H 0.095 0.905 48 H 0.098 0.902 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.085 -11.639 -2.155 29.559 hybrid contribution 0.889 0.322 -0.454 1.049 sum -26.196 -11.317 -2.609 28.655 Atomic orbital electron populations 1.21778 0.94014 1.02780 1.02553 1.22001 0.97379 0.93430 1.05151 1.21639 0.91876 0.96442 0.85638 0.88217 1.92896 1.92004 1.83876 1.48244 1.21005 0.90413 0.81003 0.80347 1.90760 1.66113 1.39055 1.43391 1.46139 1.08723 1.39433 1.43090 1.21484 0.78446 1.00187 1.00069 1.20832 0.94165 0.98950 0.98972 1.20556 0.93382 0.99482 1.00034 1.22213 0.95878 0.97719 0.98759 1.21210 0.91334 1.02673 0.90018 1.62045 1.05615 1.15503 1.40144 1.21909 0.87917 0.97578 1.01316 1.19741 0.83126 0.89749 0.84451 1.90476 1.57008 1.43763 1.54962 1.41868 1.04789 1.09441 1.63994 1.19701 0.90938 0.85145 1.47053 0.87918 1.25252 0.95873 0.99427 0.97358 1.69613 1.03638 1.30649 1.50442 0.85863 0.78134 0.81956 0.78363 1.20412 1.20961 1.19447 1.22220 0.95183 0.90272 1.00265 1.20405 0.94142 0.97284 0.99058 0.91603 0.92285 0.91868 0.89367 0.89726 0.76249 0.91014 0.90942 0.90621 0.90737 0.87438 0.86682 0.94445 0.93447 0.89227 0.77495 0.91896 0.94824 0.90508 0.90246 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.83 37.16 0.37 -0.29 16 2 C -0.14 -0.82 5.41 -26.73 -0.14 -0.96 16 3 C 0.08 0.54 3.77 -27.88 -0.11 0.43 16 4 H 0.10 0.29 7.99 -51.93 -0.42 -0.12 16 5 F -0.19 -1.71 16.75 2.25 0.04 -1.68 16 6 C 0.49 4.46 7.17 -10.99 -0.08 4.38 16 7 O -0.52 -6.98 16.61 5.56 0.09 -6.89 16 8 N -0.72 -5.01 5.56 -60.29 -0.33 -5.34 16 9 C 0.12 1.03 5.66 -4.04 -0.02 1.00 16 10 C -0.09 -0.73 5.38 -27.88 -0.15 -0.88 16 11 C -0.13 -1.51 5.15 -100.92 -0.52 -2.03 16 12 C -0.13 -1.69 9.50 -35.97 -0.34 -2.03 16 13 C 0.07 1.23 5.22 -5.28 -0.03 1.20 16 14 N -0.51 -8.53 4.46 -237.56 -1.06 -9.59 16 15 C 0.04 0.79 5.44 -4.98 -0.03 0.76 16 16 C 0.44 10.42 7.54 -10.99 -0.08 10.34 16 17 O -0.58 -15.43 13.88 5.55 0.08 -15.35 16 18 N -0.56 -14.25 5.29 -10.96 -0.06 -14.30 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 23 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C 0.05 0.63 5.59 -3.59 -0.02 0.61 16 28 C -0.07 -0.79 6.04 -28.03 -0.17 -0.96 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.31 7.94 -51.93 -0.41 -0.10 16 32 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.40 1.52 8.36 -40.82 -0.34 1.18 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.51 8.12 -51.93 -0.42 0.08 16 38 H 0.07 0.56 7.85 -51.93 -0.41 0.15 16 39 H 0.11 1.27 7.81 -52.49 -0.41 0.86 16 40 H 0.12 2.29 5.98 -51.93 -0.31 1.98 16 41 H 0.04 0.59 8.06 -51.93 -0.42 0.18 16 42 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 43 H 0.09 1.44 7.94 -51.93 -0.41 1.03 16 44 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 47 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 48 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 405.84 15.07 6.12 6.12 Total: -1.00 -34.05 405.84 -9.00 -43.05 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.01 Total: 8.12 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.56 Total: 3.65 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.73 Total: -53.02 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.17 Total: -22.24 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.05 -9.00 -43.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160905026.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.594 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds