Wall clock time and date at job start Wed Apr 1 2020 01:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 H 1.08999 * 109.46879 * 55.00171 * 3 2 1 5 5 F 1.39900 * 109.46953 * 295.00235 * 3 2 1 6 6 C 1.50696 * 109.47178 * 174.99769 * 3 2 1 7 7 O 1.21280 * 120.00201 * 45.00184 * 6 3 2 8 8 N 1.34781 * 120.00062 * 225.00197 * 6 3 2 9 9 C 1.46502 * 119.99983 * 180.02562 * 8 6 3 10 10 C 1.52999 * 109.46845 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.46858 * 180.02562 * 10 9 8 12 12 C 1.29823 * 118.55903 * 94.99580 * 11 10 9 13 13 C 1.50140 * 123.28749 * 180.39016 * 12 11 10 14 14 N 1.46846 * 110.27590 * 342.93553 * 13 12 11 15 15 C 1.46899 * 111.00302 * 174.31282 * 14 13 12 16 16 C 1.50698 * 109.46987 * 66.03980 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47425 * 90.00231 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00087 * 23 21 19 26 26 H 1.48505 * 109.47256 * 330.00093 * 23 21 19 27 27 C 1.47239 * 110.20601 * 50.91850 * 14 13 12 28 28 C 1.50313 * 118.54933 * 274.97842 * 11 10 9 29 29 H 1.08994 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47235 * 299.99939 * 1 2 3 31 31 H 1.09001 * 109.46736 * 60.00028 * 1 2 3 32 32 H 1.09000 * 109.47235 * 240.00061 * 2 1 3 33 33 H 1.09001 * 109.47172 * 119.99660 * 2 1 3 34 34 H 0.96998 * 120.00007 * 0.02562 * 8 6 3 35 35 H 1.09004 * 109.46986 * 60.00106 * 9 8 6 36 36 H 1.08999 * 109.46852 * 300.00202 * 9 8 6 37 37 H 1.08995 * 109.47059 * 60.00112 * 10 9 8 38 38 H 1.09003 * 109.47163 * 299.99496 * 10 9 8 39 39 H 1.08001 * 118.35167 * 0.37934 * 12 11 10 40 40 H 1.08998 * 109.34082 * 222.68723 * 13 12 11 41 41 H 1.09003 * 109.33334 * 103.17518 * 13 12 11 42 42 H 1.09003 * 109.46477 * 306.04469 * 15 14 13 43 43 H 1.08993 * 109.47002 * 186.04796 * 15 14 13 44 44 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 45 45 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.63934 * 50.89479 * 27 14 13 47 47 H 1.08999 * 109.63492 * 171.50188 * 27 14 13 48 48 H 1.09000 * 109.42632 * 283.57557 * 28 11 10 49 49 H 1.08996 * 109.43207 * 43.42603 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6699 2.0680 -1.1954 6 6 3.5419 1.4443 0.1239 7 8 4.2064 0.6811 -0.5445 8 7 4.1467 2.2941 0.9775 9 6 5.6068 2.2962 1.0976 10 6 6.0324 3.3464 2.1256 11 6 7.5344 3.3490 2.2486 12 6 8.2134 4.2018 1.5435 13 6 9.7117 4.2912 1.5773 14 7 10.2358 3.6059 2.7656 15 6 11.7041 3.5662 2.7458 16 6 12.2462 4.9667 2.8712 17 8 11.4843 5.9055 2.9681 18 7 13.5776 5.1759 2.8768 19 6 14.0708 6.4505 2.9853 20 1 13.3923 7.2865 3.0707 21 6 15.4433 6.6668 2.9853 22 7 16.2688 5.6496 2.8808 23 14 16.1152 8.4034 3.1338 24 1 16.3134 8.7366 4.5672 25 1 17.4145 8.4942 2.4203 26 1 15.1520 9.3600 2.5317 27 6 9.6724 2.2488 2.8599 28 6 8.1804 2.3642 3.1826 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6152 2.9043 1.5124 35 1 6.0505 2.5340 0.1307 36 1 5.9461 1.3122 1.4209 37 1 5.5887 3.1090 3.0925 38 1 5.6931 4.3303 1.8018 39 1 7.6733 4.8808 0.9004 40 1 10.0104 5.3391 1.6039 41 1 10.1213 3.8243 0.6815 42 1 12.0430 3.1281 1.8070 43 1 12.0624 2.9618 3.5790 44 1 14.1869 4.4251 2.7997 45 1 17.2269 5.8005 2.8811 46 1 9.8026 1.7312 1.9095 47 1 10.1771 1.6970 3.6529 48 1 8.0568 2.7048 4.2106 49 1 7.7077 1.3892 3.0651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160905026.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:15 Heat of formation + Delta-G solvation = -138.372805 kcal Electronic energy + Delta-G solvation = -28683.771065 eV Core-core repulsion = 24365.922296 eV Total energy + Delta-G solvation = -4317.848770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.95054 -40.88839 -40.61187 -39.38150 -36.98938 -35.93988 -35.03516 -34.86533 -33.27356 -31.76045 -31.38415 -29.15819 -27.99598 -26.41386 -24.94117 -24.25472 -23.02332 -22.57861 -21.62571 -21.05848 -19.88574 -18.93448 -18.48041 -17.95783 -17.78997 -17.23441 -16.83815 -16.62617 -16.50057 -16.14896 -15.95933 -15.69498 -15.66550 -15.39267 -15.29648 -14.92137 -14.69949 -14.24574 -14.16927 -13.94105 -13.87203 -13.51129 -13.45068 -13.27937 -13.14366 -13.05993 -12.90004 -12.84463 -12.47564 -12.41590 -12.31568 -12.12491 -12.02519 -11.92263 -11.84653 -11.46598 -11.41608 -10.91621 -10.28285 -10.25552 -10.00392 -9.73954 -9.18774 -8.46230 -5.94859 1.23128 1.27709 1.37878 1.41472 1.54130 1.93502 2.05568 2.28530 2.77965 3.20446 3.35677 3.39208 3.51762 3.68719 3.77839 3.87463 3.91673 4.03122 4.14880 4.26988 4.29079 4.40518 4.41640 4.45183 4.47417 4.50806 4.52602 4.59886 4.67444 4.73886 4.77022 4.89870 4.94716 5.03911 5.07097 5.14551 5.14738 5.22230 5.28236 5.35027 5.40960 5.51221 5.91598 6.00226 6.17261 6.20957 6.33386 6.61417 7.00561 7.13506 7.56899 8.12959 8.71227 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.035548 B = 0.001496 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.474246 B =18707.760530 C =19023.883156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.141 4.141 3 C 0.084 3.916 4 H 0.145 0.855 5 F -0.206 7.206 6 C 0.485 3.515 7 O -0.570 6.570 8 N -0.705 5.705 9 C 0.127 3.873 10 C -0.081 4.081 11 C -0.115 4.115 12 C -0.159 4.159 13 C 0.079 3.921 14 N -0.527 5.527 15 C 0.055 3.945 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.273 1.273 27 C 0.046 3.954 28 C -0.074 4.074 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.422 0.578 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.039 0.961 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.906 -12.832 -0.706 31.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.180 4.180 3 C 0.045 3.955 4 H 0.163 0.837 5 F -0.187 7.187 6 C 0.269 3.731 7 O -0.449 6.449 8 N -0.358 5.358 9 C 0.003 3.997 10 C -0.119 4.119 11 C -0.115 4.115 12 C -0.178 4.178 13 C -0.048 4.048 14 N -0.252 5.252 15 C -0.076 4.076 16 C 0.228 3.772 17 O -0.500 6.500 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.081 4.081 28 C -0.111 4.111 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.260 0.740 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.131 0.869 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.111 0.889 48 H 0.101 0.899 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -28.876 -12.469 -0.724 31.461 hybrid contribution 1.392 0.531 -0.864 1.722 sum -27.483 -11.938 -1.588 30.006 Atomic orbital electron populations 1.21768 0.92664 1.03344 1.03000 1.22008 0.98457 0.92960 1.04527 1.21892 0.89999 0.97391 0.86244 0.83748 1.92863 1.91950 1.84206 1.49642 1.21553 0.91551 0.80301 0.79665 1.90738 1.67437 1.41236 1.45457 1.45999 1.08281 1.38978 1.42532 1.21297 0.79251 1.00050 0.99066 1.20778 0.91700 0.99309 1.00081 1.20909 0.95220 0.97654 0.97762 1.22116 0.94082 1.00185 1.01400 1.20987 0.93766 1.00052 0.90013 1.62019 1.04690 1.18110 1.40343 1.21794 0.89069 0.93688 1.03042 1.20766 0.82289 0.91824 0.82275 1.90456 1.57760 1.45826 1.55963 1.41934 1.05627 1.08810 1.64807 1.19663 0.91443 0.85775 1.49359 0.90333 1.26021 0.95527 1.03296 0.96348 1.69675 1.04056 1.32234 1.50234 0.84935 0.77587 0.77215 0.78642 1.19596 1.19575 1.19831 1.22384 0.96466 0.88113 1.01178 1.20516 0.92904 0.98719 0.98916 0.91058 0.90396 0.92805 0.91882 0.88574 0.74040 0.93178 0.91259 0.88073 0.89888 0.86656 0.91156 0.94802 0.91840 0.86883 0.77063 0.91337 0.94291 0.88917 0.89937 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.83 71.98 0.71 -0.27 16 2 C -0.14 -1.44 5.41 30.60 0.17 -1.27 16 3 C 0.08 0.91 3.77 29.85 0.11 1.02 16 4 H 0.15 0.27 7.99 -2.39 -0.02 0.25 16 5 F -0.21 -3.50 16.75 44.97 0.75 -2.75 16 6 C 0.48 8.17 7.17 87.66 0.63 8.80 16 7 O -0.57 -15.38 16.61 -3.03 -0.05 -15.43 16 8 N -0.71 -8.01 5.56 -463.05 -2.57 -10.58 16 9 C 0.13 1.89 5.66 86.38 0.49 2.38 16 10 C -0.08 -1.05 5.38 29.85 0.16 -0.89 16 11 C -0.11 -2.35 5.15 -15.40 -0.08 -2.43 16 12 C -0.16 -4.21 9.50 26.68 0.25 -3.96 16 13 C 0.08 2.69 5.22 85.39 0.45 3.14 16 14 N -0.53 -17.46 4.46 -905.51 -4.04 -21.49 16 15 C 0.06 1.96 5.44 85.56 0.47 2.43 16 16 C 0.44 21.34 7.54 87.66 0.66 22.00 16 17 O -0.61 -34.27 13.88 -3.07 -0.04 -34.32 16 18 N -0.57 -29.84 5.29 -306.98 -1.62 -31.46 16 19 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -50.04 13.05 21.66 0.28 -49.75 16 23 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C 0.05 1.09 5.59 86.27 0.48 1.57 16 28 C -0.07 -1.40 6.04 29.76 0.18 -1.22 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.05 0.46 7.94 -2.39 -0.02 0.44 16 32 H 0.06 0.96 8.05 -2.39 -0.02 0.94 16 33 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.42 1.62 8.36 -92.71 -0.78 0.85 16 35 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 0.88 8.12 -2.39 -0.02 0.86 16 38 H 0.08 1.00 7.85 -2.39 -0.02 0.98 16 39 H 0.12 2.76 7.81 -2.91 -0.02 2.73 16 40 H 0.07 3.00 5.98 -2.39 -0.01 2.98 16 41 H 0.03 1.12 8.06 -2.39 -0.02 1.10 16 42 H 0.06 2.06 8.06 -2.39 -0.02 2.04 16 43 H 0.11 3.48 7.94 -2.39 -0.02 3.46 16 44 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 45 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 46 H 0.04 0.89 8.08 -2.39 -0.02 0.87 16 47 H 0.09 1.90 7.92 -2.39 -0.02 1.88 16 48 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -77.73 405.84 0.15 -77.58 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.54 Total: 30.13 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 5.95 Total: 12.82 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -7.95 Total: -113.30 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.09 Total: -49.75 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.75 Total: -2.75 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -77.73 0.15 -77.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160905026.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.792 kcal (2) G-P(sol) polarization free energy of solvation -77.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds