Wall clock time and date at job start Wed Apr 1 2020 00:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38688 * 119.27624 * 2 1 4 4 C 1.38009 * 119.62715 * 179.69560 * 3 2 1 5 5 C 1.41008 * 118.27825 * 0.54462 * 4 3 2 6 6 C 1.41017 * 120.70225 * 179.73065 * 5 4 3 7 7 H 1.07995 * 119.99805 * 198.78987 * 6 5 4 8 8 C 1.39950 * 120.00030 * 18.79810 * 6 5 4 9 9 N 1.30866 * 119.99994 * 20.79940 * 8 6 5 10 10 Si 1.86804 * 119.99706 * 200.80037 * 8 6 5 11 11 H 1.48502 * 109.46829 * 265.00805 * 10 8 6 12 12 H 1.48497 * 109.47334 * 25.01093 * 10 8 6 13 13 H 1.48501 * 109.46694 * 145.01420 * 10 8 6 14 14 C 1.41698 * 118.58938 * 359.46305 * 5 4 3 15 15 N 1.38095 * 119.90978 * 180.29590 * 14 5 4 16 16 C 1.49599 * 111.00106 * 76.25597 * 15 14 5 17 17 C 1.56741 * 99.23303 * 117.89470 * 16 15 14 18 18 C 1.55146 * 101.83210 * 43.31182 * 17 16 15 19 19 C 1.50229 * 111.00521 * 187.73141 * 15 14 5 20 20 C 1.50698 * 117.58018 * 63.41715 * 19 15 14 21 21 O 1.21275 * 120.00209 * 219.69264 * 20 19 15 22 22 N 1.34773 * 119.99802 * 39.68922 * 20 19 15 23 23 C 1.47022 * 125.64907 * 4.46274 * 22 20 19 24 24 C 1.54318 * 107.27948 * 180.96391 * 23 22 20 25 25 C 1.55159 * 102.85928 * 22.52465 * 24 23 22 26 26 C 1.47431 * 125.64998 * 184.76066 * 22 20 19 27 27 C 1.55704 * 108.30585 * 283.76799 * 19 15 14 28 28 N 1.31972 * 119.27976 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47326 * 270.02308 * 1 2 3 30 30 H 1.09004 * 109.47019 * 30.01990 * 1 2 3 31 31 H 1.09002 * 109.47259 * 150.02061 * 1 2 3 32 32 H 1.08002 * 120.18746 * 359.95919 * 3 2 1 33 33 H 1.08004 * 120.86058 * 180.28326 * 4 3 2 34 34 H 0.97000 * 119.99868 * 180.02562 * 9 8 6 35 35 H 1.09004 * 111.45090 * 235.40564 * 16 15 14 36 36 H 1.09005 * 111.44619 * 0.39299 * 16 15 14 37 37 H 1.09001 * 118.97279 * 179.14930 * 17 16 15 38 38 H 1.08990 * 114.44228 * 183.28863 * 18 17 16 39 39 H 1.09007 * 114.47320 * 49.87957 * 18 17 16 40 40 H 1.08999 * 109.88084 * 300.50614 * 23 22 20 41 41 H 1.09000 * 109.88385 * 61.67141 * 23 22 20 42 42 H 1.08991 * 110.92517 * 264.11291 * 24 23 22 43 43 H 1.09002 * 110.74554 * 140.84938 * 24 23 22 44 44 H 1.09005 * 111.00566 * 206.23145 * 25 24 23 45 45 H 1.08997 * 111.00744 * 82.37918 * 25 24 23 46 46 H 1.09001 * 110.36781 * 274.67827 * 26 22 20 47 47 H 1.08997 * 110.36175 * 37.00102 * 26 22 20 48 48 H 1.08998 * 114.52478 * 53.20957 * 27 19 15 49 49 H 1.08994 * 114.52683 * 186.89186 * 27 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2182 0.0064 5 6 4.2409 -0.0195 0.0009 6 6 5.6501 -0.0704 0.0013 7 1 6.1578 -0.9734 -0.3039 8 6 6.3907 1.0491 0.3974 9 7 5.8332 1.9746 1.1358 10 14 8.1750 1.2221 -0.1279 11 1 9.0595 0.6989 0.9441 12 1 8.4005 0.4504 -1.3764 13 1 8.4833 2.6546 -0.3688 14 6 3.4737 -1.2108 0.0008 15 7 4.1073 -2.4378 0.0017 16 6 4.6472 -2.7614 1.3589 17 6 3.8130 -4.0539 1.6597 18 6 3.8898 -4.8047 0.3042 19 6 3.1197 -3.5540 -0.1872 20 6 2.3600 -3.6007 -1.4878 21 8 1.1854 -3.9025 -1.4935 22 7 2.9859 -3.3071 -2.6447 23 6 4.4196 -3.0174 -2.7937 24 6 4.6737 -2.7162 -4.2857 25 6 3.2716 -2.2902 -4.7957 26 6 2.3453 -3.2171 -3.9695 27 6 2.3639 -3.7709 1.1567 28 7 2.1524 -1.1511 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6364 2.1400 -0.0007 33 1 4.1135 2.1487 0.0111 34 1 6.3464 2.7507 1.4100 35 1 5.7153 -2.9759 1.3222 36 1 4.4270 -1.9694 2.0747 37 1 3.9733 -4.5784 2.6017 38 1 3.3159 -5.7306 0.2685 39 1 4.8968 -4.9025 -0.1014 40 1 4.6878 -2.1518 -2.1880 41 1 5.0066 -3.8832 -2.4872 42 1 5.0201 -3.6072 -4.8092 43 1 5.3890 -1.9015 -4.3988 44 1 3.1681 -2.4854 -5.8631 45 1 3.0761 -1.2417 -4.5712 46 1 2.2865 -4.2032 -4.4303 47 1 1.3512 -2.7789 -3.8811 48 1 1.9091 -2.8709 1.5704 49 1 1.7033 -4.6378 1.1694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165995384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:46 Heat of formation + Delta-G solvation = 73.549304 kcal Electronic energy + Delta-G solvation = -32383.235435 eV Core-core repulsion = 28505.345522 eV Total energy + Delta-G solvation = -3877.889913 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.34548 -38.88314 -38.12812 -36.65322 -34.34806 -32.98451 -31.26525 -30.78537 -29.46256 -28.82050 -27.68905 -27.31651 -24.87953 -24.23475 -23.59352 -21.92066 -20.98266 -20.81451 -20.20446 -19.37095 -18.28731 -17.38247 -16.87456 -16.08678 -15.66154 -15.48500 -14.94883 -14.49648 -14.09533 -13.87427 -13.78344 -13.58519 -13.23909 -13.05693 -12.94538 -12.86258 -12.49200 -12.15222 -12.07180 -11.77399 -11.70563 -11.57868 -11.45742 -11.30906 -11.29819 -11.06477 -11.01032 -10.89004 -10.86622 -10.73109 -10.60596 -10.48808 -10.38889 -9.92300 -9.68039 -9.34521 -9.16070 -8.65460 -8.14233 -8.02975 -7.99129 -7.24474 -6.88114 -4.42901 2.53276 2.85936 2.97726 3.01402 3.11266 3.17578 3.54478 3.78653 4.36173 4.52188 4.71580 4.74974 4.89324 4.91162 4.98418 5.14915 5.31258 5.37606 5.56295 5.60383 5.65376 5.73884 5.87459 5.92832 5.95515 6.01492 6.05187 6.12531 6.14678 6.23443 6.24686 6.30315 6.31048 6.38727 6.40026 6.46473 6.54755 6.56969 6.59932 6.69374 6.72661 6.84828 6.94132 6.95148 7.11141 7.25653 7.53310 7.73652 7.96660 8.04526 8.15516 8.48976 8.62936 8.78814 8.83339 9.61860 9.95042 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009475 B = 0.005625 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.483806 B = 4976.410537 C = 5353.941278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.003 4.003 3 C -0.150 4.150 4 C -0.142 4.142 5 C 0.080 3.920 6 C -0.426 4.426 7 H 0.091 0.909 8 C 0.073 3.927 9 N -0.782 5.782 10 Si 0.907 3.093 11 H -0.269 1.269 12 H -0.257 1.257 13 H -0.276 1.276 14 C 0.146 3.854 15 N -0.393 5.393 16 C 0.056 3.944 17 C -0.149 4.149 18 C -0.127 4.127 19 C 0.058 3.942 20 C 0.594 3.406 21 O -0.545 6.545 22 N -0.610 5.610 23 C 0.104 3.896 24 C -0.133 4.133 25 C -0.132 4.132 26 C 0.109 3.891 27 C -0.120 4.120 28 N -0.471 5.471 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.283 0.717 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.082 0.918 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 -6.610 -4.745 8.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.143 4.143 3 C -0.170 4.170 4 C -0.168 4.168 5 C 0.074 3.926 6 C -0.455 4.455 7 H 0.109 0.891 8 C -0.146 4.146 9 N -0.406 5.406 10 Si 0.731 3.269 11 H -0.194 1.194 12 H -0.181 1.181 13 H -0.201 1.201 14 C -0.087 4.087 15 N -0.114 5.114 16 C -0.070 4.070 17 C -0.168 4.168 18 C -0.165 4.165 19 C -0.034 4.034 20 C 0.382 3.618 21 O -0.422 6.422 22 N -0.344 5.344 23 C -0.019 4.019 24 C -0.171 4.171 25 C -0.170 4.170 26 C -0.014 4.014 27 C -0.159 4.159 28 N -0.183 5.183 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.149 0.851 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.739 -7.281 -5.000 8.864 hybrid contribution 0.737 1.218 0.423 1.485 sum 1.476 -6.064 -4.578 7.740 Atomic orbital electron populations 1.20254 0.91899 1.00675 1.00195 1.20018 0.94484 0.88238 1.11540 1.21397 0.95386 0.96818 1.03445 1.21659 0.92327 0.98780 1.04016 1.17902 0.93842 0.89767 0.91134 1.19525 0.90805 0.98811 1.36328 0.89064 1.26052 1.01220 0.94926 0.92408 1.69839 1.38775 1.08655 1.23373 0.86306 0.81585 0.78564 0.80474 1.19446 1.18063 1.20078 1.19569 0.87592 0.89784 1.11773 1.64100 1.23832 0.98382 1.25097 1.23697 0.98684 0.94662 0.89972 1.24717 0.97035 0.97884 0.97135 1.23849 1.00291 0.95710 0.96690 1.23551 0.93962 0.93422 0.92497 1.18814 0.85677 0.74840 0.82463 1.90608 1.15882 1.49122 1.86560 1.48255 1.09800 1.69896 1.06463 1.22138 0.80939 1.02558 0.96266 1.22643 0.97308 1.01561 0.95541 1.22756 0.94980 1.00192 0.99102 1.22094 0.97330 0.98723 0.83247 1.24116 0.94828 1.02378 0.94608 1.66842 1.09421 1.29698 1.12323 0.93472 0.93273 0.92622 0.88721 0.85133 0.90607 0.89286 0.91121 0.87632 0.89707 0.90732 0.88236 0.92223 0.91348 0.90138 0.90475 0.90598 0.92271 0.91083 0.89972 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 10.15 36.00 0.37 -1.06 16 2 C 0.00 -0.07 6.79 -82.37 -0.56 -0.63 16 3 C -0.15 -3.47 9.69 -39.50 -0.38 -3.85 16 4 C -0.14 -3.49 8.85 -38.62 -0.34 -3.83 16 5 C 0.08 1.95 5.59 -106.47 -0.60 1.35 16 6 C -0.43 -10.00 8.18 -37.89 -0.31 -10.31 16 7 H 0.09 2.08 7.47 -52.49 -0.39 1.69 16 8 C 0.07 1.66 5.15 -17.32 -0.09 1.57 16 9 N -0.78 -18.44 10.81 55.55 0.60 -17.84 16 10 Si 0.91 17.02 29.61 -169.99 -5.03 11.99 16 11 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 12 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 13 H -0.28 -5.16 7.11 56.52 0.40 -4.75 16 14 C 0.15 3.38 4.95 -155.03 -0.77 2.62 16 15 N -0.39 -7.85 2.82 -156.01 -0.44 -8.29 16 16 C 0.06 1.03 6.17 -0.30 0.00 1.03 16 17 C -0.15 -2.34 6.39 -91.85 -0.59 -2.93 16 18 C -0.13 -1.97 7.30 -31.32 -0.23 -2.20 16 19 C 0.06 1.11 0.74 -134.43 -0.10 1.01 16 20 C 0.59 12.22 6.51 -10.99 -0.07 12.15 16 21 O -0.55 -12.67 17.01 5.56 0.09 -12.58 16 22 N -0.61 -11.03 3.33 -170.52 -0.57 -11.60 16 23 C 0.10 1.67 6.08 -3.07 -0.02 1.66 16 24 C -0.13 -1.69 6.95 -24.90 -0.17 -1.87 16 25 C -0.13 -1.71 7.08 -24.58 -0.17 -1.88 16 26 C 0.11 1.68 6.89 -2.52 -0.02 1.67 16 27 C -0.12 -2.22 6.82 -30.41 -0.21 -2.43 16 28 N -0.47 -11.17 6.67 -8.11 -0.05 -11.22 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.13 3.29 5.97 -52.48 -0.31 2.98 16 34 H 0.28 6.09 8.30 -40.82 -0.34 5.75 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.07 1.46 7.69 -51.93 -0.40 1.06 16 37 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.21 7.86 -51.93 -0.41 0.80 16 39 H 0.07 1.08 8.11 -51.92 -0.42 0.66 16 40 H 0.10 1.92 6.25 -51.93 -0.32 1.59 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 48 H 0.08 1.75 6.88 -51.93 -0.36 1.39 16 49 H 0.09 1.53 7.86 -51.93 -0.41 1.12 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -28.15 383.90 -11.52 -39.67 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -7.65 Total: 12.03 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -4.26 Total: -7.94 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.46 Total: -48.95 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.15 -11.52 -39.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165995384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.219 kcal (2) G-P(sol) polarization free energy of solvation -28.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds