Wall clock time and date at job start Wed Apr 1 2020 00:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38688 * 119.27624 * 2 1 4 4 C 1.38009 * 119.62715 * 179.69560 * 3 2 1 5 5 C 1.41008 * 118.27825 * 0.54462 * 4 3 2 6 6 C 1.41017 * 120.70225 * 179.73065 * 5 4 3 7 7 H 1.07995 * 119.99805 * 198.78987 * 6 5 4 8 8 C 1.39950 * 120.00030 * 18.79810 * 6 5 4 9 9 N 1.30866 * 119.99994 * 20.79940 * 8 6 5 10 10 Si 1.86804 * 119.99706 * 200.80037 * 8 6 5 11 11 H 1.48502 * 109.46829 * 265.00805 * 10 8 6 12 12 H 1.48497 * 109.47334 * 25.01093 * 10 8 6 13 13 H 1.48501 * 109.46694 * 145.01420 * 10 8 6 14 14 C 1.41698 * 118.58938 * 359.46305 * 5 4 3 15 15 N 1.38095 * 119.90978 * 180.29590 * 14 5 4 16 16 C 1.49599 * 111.00106 * 76.25597 * 15 14 5 17 17 C 1.56741 * 99.23303 * 117.89470 * 16 15 14 18 18 C 1.55146 * 101.83210 * 43.31182 * 17 16 15 19 19 C 1.50229 * 111.00521 * 187.73141 * 15 14 5 20 20 C 1.50698 * 117.58018 * 63.41715 * 19 15 14 21 21 O 1.21275 * 120.00209 * 219.69264 * 20 19 15 22 22 N 1.34773 * 119.99802 * 39.68922 * 20 19 15 23 23 C 1.47022 * 125.64907 * 4.46274 * 22 20 19 24 24 C 1.54318 * 107.27948 * 180.96391 * 23 22 20 25 25 C 1.55159 * 102.85928 * 22.52465 * 24 23 22 26 26 C 1.47431 * 125.64998 * 184.76066 * 22 20 19 27 27 C 1.55704 * 108.30585 * 283.76799 * 19 15 14 28 28 N 1.31972 * 119.27976 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47326 * 270.02308 * 1 2 3 30 30 H 1.09004 * 109.47019 * 30.01990 * 1 2 3 31 31 H 1.09002 * 109.47259 * 150.02061 * 1 2 3 32 32 H 1.08002 * 120.18746 * 359.95919 * 3 2 1 33 33 H 1.08004 * 120.86058 * 180.28326 * 4 3 2 34 34 H 0.97000 * 119.99868 * 180.02562 * 9 8 6 35 35 H 1.09004 * 111.45090 * 235.40564 * 16 15 14 36 36 H 1.09005 * 111.44619 * 0.39299 * 16 15 14 37 37 H 1.09001 * 118.97279 * 179.14930 * 17 16 15 38 38 H 1.08990 * 114.44228 * 183.28863 * 18 17 16 39 39 H 1.09007 * 114.47320 * 49.87957 * 18 17 16 40 40 H 1.08999 * 109.88084 * 300.50614 * 23 22 20 41 41 H 1.09000 * 109.88385 * 61.67141 * 23 22 20 42 42 H 1.08991 * 110.92517 * 264.11291 * 24 23 22 43 43 H 1.09002 * 110.74554 * 140.84938 * 24 23 22 44 44 H 1.09005 * 111.00566 * 206.23145 * 25 24 23 45 45 H 1.08997 * 111.00744 * 82.37918 * 25 24 23 46 46 H 1.09001 * 110.36781 * 274.67827 * 26 22 20 47 47 H 1.08997 * 110.36175 * 37.00102 * 26 22 20 48 48 H 1.08998 * 114.52478 * 53.20957 * 27 19 15 49 49 H 1.08994 * 114.52683 * 186.89186 * 27 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2182 0.0064 5 6 4.2409 -0.0195 0.0009 6 6 5.6501 -0.0704 0.0013 7 1 6.1578 -0.9734 -0.3039 8 6 6.3907 1.0491 0.3974 9 7 5.8332 1.9746 1.1358 10 14 8.1750 1.2221 -0.1279 11 1 9.0595 0.6989 0.9441 12 1 8.4005 0.4504 -1.3764 13 1 8.4833 2.6546 -0.3688 14 6 3.4737 -1.2108 0.0008 15 7 4.1073 -2.4378 0.0017 16 6 4.6472 -2.7614 1.3589 17 6 3.8130 -4.0539 1.6597 18 6 3.8898 -4.8047 0.3042 19 6 3.1197 -3.5540 -0.1872 20 6 2.3600 -3.6007 -1.4878 21 8 1.1854 -3.9025 -1.4935 22 7 2.9859 -3.3071 -2.6447 23 6 4.4196 -3.0174 -2.7937 24 6 4.6737 -2.7162 -4.2857 25 6 3.2716 -2.2902 -4.7957 26 6 2.3453 -3.2171 -3.9695 27 6 2.3639 -3.7709 1.1567 28 7 2.1524 -1.1511 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6364 2.1400 -0.0007 33 1 4.1135 2.1487 0.0111 34 1 6.3464 2.7507 1.4100 35 1 5.7153 -2.9759 1.3222 36 1 4.4270 -1.9694 2.0747 37 1 3.9733 -4.5784 2.6017 38 1 3.3159 -5.7306 0.2685 39 1 4.8968 -4.9025 -0.1014 40 1 4.6878 -2.1518 -2.1880 41 1 5.0066 -3.8832 -2.4872 42 1 5.0201 -3.6072 -4.8092 43 1 5.3890 -1.9015 -4.3988 44 1 3.1681 -2.4854 -5.8631 45 1 3.0761 -1.2417 -4.5712 46 1 2.2865 -4.2032 -4.4303 47 1 1.3512 -2.7789 -3.8811 48 1 1.9091 -2.8709 1.5704 49 1 1.7033 -4.6378 1.1694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165995384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:44 Heat of formation + Delta-G solvation = 59.948582 kcal Electronic energy + Delta-G solvation = -32383.825207 eV Core-core repulsion = 28505.345522 eV Total energy + Delta-G solvation = -3878.479684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.82307 -40.34001 -39.80896 -38.10696 -36.11348 -34.60170 -32.67314 -32.48911 -31.10693 -30.06589 -29.44453 -28.75097 -26.31947 -25.84049 -25.05510 -23.52127 -22.59024 -22.07961 -21.75165 -20.76103 -19.78591 -19.16865 -18.34511 -17.37280 -17.36023 -16.99000 -16.51146 -16.12763 -15.73658 -15.44781 -15.20683 -15.15847 -14.57897 -14.47044 -14.35888 -14.23431 -14.09198 -13.66397 -13.56894 -13.37792 -13.21991 -13.12183 -13.01549 -12.86697 -12.77711 -12.52562 -12.42279 -12.26987 -12.16060 -12.11597 -12.02598 -11.87614 -11.68111 -11.55233 -11.11195 -11.05010 -10.69601 -10.34247 -9.87077 -9.80926 -9.49306 -8.99015 -8.61215 -6.24000 0.78129 1.08264 1.43024 1.51895 1.58619 1.61835 2.18344 2.20539 2.70058 2.93322 3.35843 3.44877 3.54387 3.60400 3.68399 3.77836 3.93257 4.02552 4.08469 4.19335 4.39208 4.43650 4.52116 4.55548 4.62195 4.70026 4.73471 4.76473 4.84654 4.85928 4.92279 4.92767 4.94731 4.95617 5.01188 5.02064 5.05634 5.13066 5.17660 5.19184 5.20659 5.26668 5.33255 5.35549 5.55286 5.60145 5.76999 5.94326 6.14717 6.34367 6.61117 6.69324 6.83243 7.02663 7.28156 7.81456 8.24776 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009475 B = 0.005625 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.483806 B = 4976.410537 C = 5353.941278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.028 4.028 3 C -0.156 4.156 4 C -0.170 4.170 5 C 0.054 3.946 6 C -0.437 4.437 7 H 0.094 0.906 8 C 0.037 3.963 9 N -0.812 5.812 10 Si 0.977 3.023 11 H -0.262 1.262 12 H -0.252 1.252 13 H -0.273 1.273 14 C 0.152 3.848 15 N -0.391 5.391 16 C 0.054 3.946 17 C -0.124 4.124 18 C -0.106 4.106 19 C 0.039 3.961 20 C 0.582 3.418 21 O -0.585 6.585 22 N -0.613 5.613 23 C 0.101 3.899 24 C -0.122 4.122 25 C -0.123 4.123 26 C 0.101 3.899 27 C -0.129 4.129 28 N -0.485 5.485 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.290 0.710 35 H 0.109 0.891 36 H 0.038 0.962 37 H 0.142 0.858 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.045 0.955 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 -8.401 -5.779 10.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.166 4.166 3 C -0.176 4.176 4 C -0.196 4.196 5 C 0.048 3.952 6 C -0.466 4.466 7 H 0.112 0.888 8 C -0.180 4.180 9 N -0.436 5.436 10 Si 0.798 3.202 11 H -0.186 1.186 12 H -0.175 1.175 13 H -0.198 1.198 14 C -0.083 4.083 15 N -0.113 5.113 16 C -0.072 4.072 17 C -0.143 4.143 18 C -0.144 4.144 19 C -0.054 4.054 20 C 0.371 3.629 21 O -0.465 6.465 22 N -0.345 5.345 23 C -0.021 4.021 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.021 4.021 27 C -0.168 4.168 28 N -0.197 5.197 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.056 0.944 37 H 0.160 0.840 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.104 0.896 44 H 0.132 0.868 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.870 -9.062 -6.048 11.267 hybrid contribution 0.028 1.793 0.751 1.945 sum 2.898 -7.268 -5.297 9.449 Atomic orbital electron populations 1.20212 0.89697 1.01096 1.00987 1.20604 0.96223 0.88242 1.11578 1.21586 0.95122 0.97746 1.03157 1.21670 0.93078 0.98653 1.06214 1.18230 0.94819 0.90261 0.91851 1.19663 0.90596 0.99597 1.36744 0.88757 1.26863 1.05289 0.94115 0.91735 1.69893 1.40609 1.09224 1.23907 0.85243 0.76230 0.78516 0.80213 1.18637 1.17486 1.19833 1.19850 0.87458 0.90857 1.10085 1.64074 1.23702 0.97526 1.25961 1.23727 1.00169 0.95040 0.88308 1.24648 0.93917 0.96630 0.99067 1.23805 1.00768 0.94586 0.95204 1.23735 0.94711 0.94864 0.92070 1.19163 0.85426 0.74640 0.83635 1.90569 1.17394 1.51252 1.87276 1.48430 1.10869 1.68444 1.06804 1.22199 0.79891 1.01678 0.98326 1.22651 0.97108 1.03133 0.93105 1.22733 0.94379 0.98173 1.00772 1.22312 0.96636 1.00412 0.82741 1.24176 0.96509 1.01215 0.94889 1.66973 1.09863 1.30018 1.12820 0.92410 0.90969 0.93939 0.86859 0.86308 0.89924 0.87287 0.94379 0.84024 0.87780 0.89061 0.91738 0.90741 0.88192 0.89624 0.86786 0.92880 0.89998 0.93573 0.93629 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.50 10.15 71.23 0.72 -1.77 16 2 C -0.03 -1.35 6.79 42.64 0.29 -1.06 16 3 C -0.16 -7.49 9.69 22.32 0.22 -7.27 16 4 C -0.17 -8.78 8.85 22.89 0.20 -8.58 16 5 C 0.05 2.77 5.59 -21.06 -0.12 2.65 16 6 C -0.44 -20.95 8.18 23.37 0.19 -20.76 16 7 H 0.09 4.33 7.47 -2.91 -0.02 4.30 16 8 C 0.04 1.68 5.15 85.25 0.44 2.12 16 9 N -0.81 -39.09 10.81 21.83 0.24 -38.85 16 10 Si 0.98 34.36 29.61 68.60 2.03 36.40 16 11 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 12 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 13 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 14 C 0.15 7.29 4.95 134.05 0.66 7.96 16 15 N -0.39 -15.75 2.82 -647.50 -1.83 -17.57 16 16 C 0.05 1.94 6.17 87.09 0.54 2.48 16 17 C -0.12 -3.65 6.39 -11.59 -0.07 -3.73 16 18 C -0.11 -2.98 7.30 27.62 0.20 -2.78 16 19 C 0.04 1.46 0.74 -0.17 0.00 1.46 16 20 C 0.58 24.19 6.51 87.66 0.57 24.76 16 21 O -0.59 -27.88 17.01 -3.02 -0.05 -27.93 16 22 N -0.61 -22.00 3.33 -811.80 -2.70 -24.70 16 23 C 0.10 3.15 6.08 86.73 0.53 3.68 16 24 C -0.12 -2.80 6.95 31.78 0.22 -2.58 16 25 C -0.12 -2.95 7.08 31.99 0.23 -2.73 16 26 C 0.10 3.06 6.89 86.85 0.60 3.66 16 27 C -0.13 -4.75 6.82 28.21 0.19 -4.55 16 28 N -0.48 -23.97 6.67 -179.58 -1.20 -25.17 16 29 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 33 H 0.12 6.30 5.97 -2.91 -0.02 6.28 16 34 H 0.29 12.66 8.30 -92.71 -0.77 11.89 16 35 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 36 H 0.04 1.61 7.69 -2.38 -0.02 1.59 16 37 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.10 2.60 7.86 -2.39 -0.02 2.58 16 39 H 0.09 2.31 8.11 -2.38 -0.02 2.29 16 40 H 0.06 2.49 6.25 -2.39 -0.01 2.48 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 42 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.05 1.61 8.08 -2.39 -0.02 1.59 16 48 H 0.04 2.00 6.88 -2.39 -0.02 1.99 16 49 H 0.10 3.37 7.86 -2.39 -0.02 3.36 16 Total: -1.00 -65.37 383.90 3.05 -62.32 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: 0.95 Total: 42.56 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.61 Total: -7.05 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -5.49 Total: -106.29 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.05 Total: -27.93 kcal Atomic # 14 Polarization: 34.36 SS G_CDS: 2.03 Total: 36.40 kcal Total: -65.37 3.05 -62.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165995384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.269 kcal (2) G-P(sol) polarization free energy of solvation -65.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds