Wall clock time and date at job start Wed Apr 1 2020 01:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47482 * 2 1 4 4 H 1.09003 * 109.46763 * 303.05737 * 3 2 1 5 5 C 1.50690 * 109.47018 * 183.05537 * 3 2 1 6 6 H 1.08002 * 120.00101 * 239.99805 * 5 3 2 7 7 C 1.37879 * 120.00305 * 60.00151 * 5 3 2 8 8 N 1.31512 * 120.00021 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00173 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46952 * 90.00035 * 9 7 5 11 11 H 1.48494 * 109.47338 * 209.99967 * 9 7 5 12 12 H 1.48506 * 109.47102 * 330.00350 * 9 7 5 13 13 N 1.46896 * 109.46756 * 63.05438 * 3 2 1 14 14 C 1.46900 * 110.99711 * 201.08936 * 13 3 2 15 15 C 1.53041 * 109.46176 * 81.25591 * 14 13 3 16 16 C 1.53191 * 109.31371 * 181.38862 * 15 14 13 17 17 N 1.46928 * 108.77206 * 305.35927 * 16 15 14 18 18 C 1.34778 * 120.62965 * 233.63468 * 17 16 15 19 19 O 1.21550 * 119.99869 * 185.42618 * 18 17 16 20 20 C 1.47911 * 120.00066 * 5.42433 * 18 17 16 21 21 C 1.39622 * 119.99532 * 34.08014 * 20 18 17 22 22 C 1.37723 * 120.00631 * 179.72409 * 21 20 18 23 23 C 1.39673 * 119.99360 * 0.55076 * 22 21 20 24 24 C 1.43202 * 120.00989 * 179.74186 * 23 22 21 25 25 N 9.44691 * 94.62012 * 154.47950 * 14 1 2 26 26 C 1.39679 * 119.98695 * 359.72423 * 23 22 21 27 27 C 1.37726 * 119.99586 * 0.02562 * 26 23 22 28 28 C 1.46931 * 118.74097 * 53.60971 * 17 16 15 29 29 C 1.53044 * 109.45816 * 201.32114 * 14 13 3 30 30 H 1.08999 * 109.47089 * 304.90605 * 1 2 3 31 31 H 1.09002 * 109.47020 * 64.90245 * 1 2 3 32 32 H 1.08998 * 109.46895 * 184.90237 * 1 2 3 33 33 H 1.09003 * 109.47320 * 239.99916 * 2 1 3 34 34 H 1.09000 * 109.47467 * 119.99865 * 2 1 3 35 35 H 0.96996 * 119.99991 * 179.97438 * 8 7 5 36 36 H 1.00907 * 111.00157 * 77.13492 * 13 3 2 37 37 H 1.08994 * 109.44977 * 321.28330 * 14 13 3 38 38 H 1.09006 * 109.48984 * 301.33091 * 15 14 13 39 39 H 1.08994 * 109.50335 * 61.42803 * 15 14 13 40 40 H 1.08994 * 109.58761 * 185.57367 * 16 15 14 41 41 H 1.08999 * 109.70732 * 65.21134 * 16 15 14 42 42 H 1.08003 * 119.99479 * 0.02562 * 21 20 18 43 43 H 1.07997 * 120.00538 * 180.29133 * 22 21 20 44 44 H 1.08005 * 120.00115 * 179.97438 * 26 23 22 45 45 H 1.07997 * 119.99867 * 180.02562 * 27 26 23 46 46 H 1.08994 * 109.58422 * 186.60460 * 28 17 16 47 47 H 1.09001 * 109.69964 * 66.25018 * 28 17 16 48 48 H 1.09008 * 109.49746 * 298.56372 * 29 14 13 49 49 H 1.08999 * 109.50093 * 58.65894 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6327 1.9719 -0.8614 5 6 3.5451 1.4431 -0.0757 6 1 4.1254 1.8965 0.7143 7 6 4.1814 0.8648 -1.1536 8 7 3.4749 0.3123 -2.1154 9 14 6.0471 0.8662 -1.2478 10 1 6.5765 -0.3581 -0.5950 11 1 6.4709 0.8911 -2.6707 12 1 6.5770 2.0665 -0.5523 13 7 1.6116 2.1133 1.2346 14 6 1.6278 3.5734 1.0732 15 6 0.3501 4.0217 0.3600 16 6 0.3863 5.5404 0.1625 17 7 0.6063 6.1815 1.4661 18 6 -0.2317 7.1389 1.9106 19 8 0.0148 7.7309 2.9432 20 6 -1.4514 7.4694 1.1418 21 6 -2.1312 6.4673 0.4467 22 6 -3.2701 6.7737 -0.2646 23 6 -3.7385 8.0890 -0.3000 24 6 -4.9196 8.4090 -1.0439 25 7 -5.8565 8.6626 -1.6341 26 6 -3.0550 9.0923 0.3908 27 6 -1.9191 8.7845 1.1062 28 6 1.7569 5.7588 2.2762 29 6 1.7054 4.2376 2.4498 30 1 -0.3633 0.5881 0.8428 31 1 -0.3633 0.4359 -0.9307 32 1 -0.3633 -1.0239 0.0878 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9225 -0.0942 -2.8738 36 1 2.1822 1.8297 2.0171 37 1 2.4954 3.8634 0.4807 38 1 0.2839 3.5301 -0.6107 39 1 -0.5168 3.7538 0.9638 40 1 -0.5624 5.8773 -0.2549 41 1 1.1980 5.8036 -0.5157 42 1 -1.7666 5.4510 0.4707 43 1 -3.7985 5.9977 -0.7984 44 1 -3.4168 10.1096 0.3633 45 1 -1.3908 9.5601 1.6407 46 1 1.7123 6.2399 3.2532 47 1 2.6828 6.0380 1.7733 48 1 0.8256 3.9677 3.0341 49 1 2.6036 3.8998 2.9668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173424760.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:42 Heat of formation + Delta-G solvation = 30.234376 kcal Electronic energy + Delta-G solvation = -29486.099898 eV Core-core repulsion = 25606.331709 eV Total energy + Delta-G solvation = -3879.768189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.95367 -39.17684 -37.80729 -36.73478 -35.78399 -33.40230 -32.35571 -31.68336 -31.49014 -30.62447 -29.56822 -26.54934 -25.43142 -23.83119 -23.55868 -22.94527 -22.41187 -20.71035 -19.54561 -19.40822 -19.16019 -17.61134 -16.71401 -16.46881 -15.84642 -15.44416 -15.03631 -14.88507 -14.67537 -14.54693 -14.45124 -14.24171 -13.87095 -13.68269 -13.61421 -13.32526 -13.12771 -13.00376 -12.88006 -12.58857 -12.29723 -12.23946 -11.98999 -11.70785 -11.46419 -11.41892 -11.21173 -11.10081 -10.90600 -10.82098 -10.56755 -10.27187 -10.09250 -9.99466 -9.65835 -9.54921 -9.48044 -9.31067 -9.09199 -8.68503 -8.43776 -7.35804 -6.06594 -4.19736 0.02799 0.82778 2.17020 2.25847 2.77943 2.89432 3.21254 3.29247 3.30990 3.40476 3.45078 4.17028 4.33143 4.35467 4.39353 4.73642 4.87676 4.90288 4.95258 5.06163 5.13556 5.19402 5.22160 5.42081 5.45910 5.48424 5.61163 5.69640 5.76031 5.80327 5.82097 5.96420 6.06223 6.09800 6.21042 6.21850 6.33263 6.37238 6.45595 6.58296 6.65768 6.73924 7.05039 7.05794 7.11493 7.27217 7.37041 7.53005 7.71186 7.96147 8.01006 8.08844 8.26062 8.57530 8.92694 9.48490 10.93172 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.002630 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.132782 B =10644.444915 C =11545.741643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.685 5.685 14 C 0.093 3.907 15 C -0.121 4.121 16 C 0.076 3.924 17 N -0.596 5.596 18 C 0.555 3.445 19 O -0.538 6.538 20 C -0.096 4.096 21 C -0.098 4.098 22 C -0.075 4.075 23 C -0.011 4.011 24 C 0.253 3.747 25 N -0.412 5.412 26 C -0.077 4.077 27 C -0.067 4.067 28 C 0.115 3.885 29 C -0.133 4.133 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.023 0.977 33 H 0.089 0.911 34 H 0.029 0.971 35 H 0.261 0.739 36 H 0.329 0.671 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.157 0.843 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.144 0.856 46 H 0.090 0.910 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.720 13.165 4.839 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.315 5.315 14 C -0.017 4.017 15 C -0.160 4.160 16 C -0.047 4.047 17 N -0.328 5.328 18 C 0.343 3.657 19 O -0.417 6.417 20 C -0.100 4.100 21 C -0.116 4.116 22 C -0.096 4.096 23 C -0.014 4.014 24 C -0.062 4.062 25 N -0.087 5.087 26 C -0.097 4.097 27 C -0.086 4.086 28 C -0.007 4.007 29 C -0.171 4.171 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.174 0.826 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.161 0.839 46 H 0.109 0.891 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.674 13.694 4.135 18.463 hybrid contribution 2.537 -0.170 -0.043 2.543 sum -9.137 13.524 4.092 16.826 Atomic orbital electron populations 1.21713 0.98996 0.98494 1.00332 1.21507 0.92075 0.99326 1.01693 1.19145 0.92305 0.90981 0.86742 0.94771 1.21854 0.92758 1.37748 1.06183 0.92970 1.24917 0.97904 0.94986 0.95608 1.69864 1.34972 1.37627 1.09772 0.86694 0.86231 0.78408 0.77231 1.20668 1.21215 1.20103 1.60926 1.58629 1.03435 1.08481 1.21237 0.96214 0.90251 0.94028 1.21926 0.99412 0.92397 1.02260 1.22624 1.03743 0.94291 0.84003 1.48032 1.27319 1.37392 1.20034 1.18273 0.82770 0.79693 0.84928 1.90783 1.74825 1.51413 1.24629 1.20219 0.96352 0.94844 0.98546 1.21700 0.94201 1.00645 0.95027 1.21193 0.95453 0.94745 0.98176 1.16146 0.91156 0.94877 0.99223 1.25686 0.93067 0.93891 0.93601 1.81280 1.10825 1.07399 1.09167 1.21141 0.94342 0.98980 0.95264 1.21149 0.95086 0.95619 0.96744 1.21661 0.87454 0.95286 0.96325 1.22089 1.02765 0.93642 0.98618 0.93013 0.94626 0.95763 0.89262 0.95206 0.92861 0.85472 0.93167 0.90078 0.91419 0.87824 0.90870 0.82550 0.84019 0.84279 0.83866 0.89141 0.91225 0.91203 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.85 37.16 0.37 -2.23 16 2 C -0.11 -2.39 5.44 -26.73 -0.15 -2.53 16 3 C 0.22 4.79 1.84 -68.87 -0.13 4.66 16 4 H 0.03 0.84 6.85 -51.93 -0.36 0.48 16 5 C -0.55 -13.61 8.06 -34.44 -0.28 -13.89 16 6 H 0.05 1.30 7.79 -52.49 -0.41 0.89 16 7 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 8 N -0.88 -23.68 11.30 55.43 0.63 -23.06 16 9 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 N -0.69 -12.42 5.32 -100.91 -0.54 -12.96 16 14 C 0.09 1.44 2.29 -67.67 -0.16 1.29 16 15 C -0.12 -1.58 5.21 -26.61 -0.14 -1.71 16 16 C 0.08 0.80 5.53 -3.71 -0.02 0.78 16 17 N -0.60 -6.93 2.97 -173.85 -0.52 -7.45 16 18 C 0.56 6.72 7.40 -12.30 -0.09 6.63 16 19 O -0.54 -8.14 16.24 5.32 0.09 -8.05 16 20 C -0.10 -0.89 5.45 -104.90 -0.57 -1.46 16 21 C -0.10 -0.75 7.38 -39.25 -0.29 -1.04 16 22 C -0.08 -0.50 9.73 -39.23 -0.38 -0.88 16 23 C -0.01 -0.07 5.73 -106.90 -0.61 -0.69 16 24 C 0.25 2.24 15.32 -22.47 -0.34 1.90 16 25 N -0.41 -4.66 18.54 41.84 0.78 -3.89 16 26 C -0.08 -0.49 9.73 -39.23 -0.38 -0.87 16 27 C -0.07 -0.52 9.59 -39.25 -0.38 -0.90 16 28 C 0.12 1.40 6.42 -3.71 -0.02 1.37 16 29 C -0.13 -1.72 5.40 -26.61 -0.14 -1.86 16 30 H 0.05 0.93 7.56 -51.93 -0.39 0.54 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 2.25 5.99 -51.93 -0.31 1.94 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.33 6.03 8.17 -39.29 -0.32 5.71 16 37 H 0.05 0.91 7.51 -51.93 -0.39 0.52 16 38 H 0.08 1.18 7.10 -51.93 -0.37 0.81 16 39 H 0.07 0.85 7.65 -51.93 -0.40 0.45 16 40 H 0.10 0.88 3.48 -51.95 -0.18 0.70 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.16 1.16 5.03 -52.48 -0.26 0.90 16 43 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.14 0.60 8.06 -52.48 -0.42 0.17 16 45 H 0.14 1.03 7.98 -52.49 -0.42 0.61 16 46 H 0.09 1.13 7.04 -51.93 -0.37 0.76 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 49 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 394.43 15.07 5.94 5.94 Total: -1.00 -29.02 394.43 -9.56 -38.58 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.11 Total: 5.45 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -3.81 Total: -9.75 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.35 Total: -47.34 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.02 -9.56 -38.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173424760.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.817 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds