Wall clock time and date at job start Wed Apr 1 2020 01:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47482 * 2 1 4 4 H 1.09003 * 109.46763 * 303.05737 * 3 2 1 5 5 C 1.50690 * 109.47018 * 183.05537 * 3 2 1 6 6 H 1.08002 * 120.00101 * 239.99805 * 5 3 2 7 7 C 1.37879 * 120.00305 * 60.00151 * 5 3 2 8 8 N 1.31512 * 120.00021 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00173 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46952 * 90.00035 * 9 7 5 11 11 H 1.48494 * 109.47338 * 209.99967 * 9 7 5 12 12 H 1.48506 * 109.47102 * 330.00350 * 9 7 5 13 13 N 1.46896 * 109.46756 * 63.05438 * 3 2 1 14 14 C 1.46900 * 110.99711 * 201.08936 * 13 3 2 15 15 C 1.53041 * 109.46176 * 81.25591 * 14 13 3 16 16 C 1.53191 * 109.31371 * 181.38862 * 15 14 13 17 17 N 1.46928 * 108.77206 * 305.35927 * 16 15 14 18 18 C 1.34778 * 120.62965 * 233.63468 * 17 16 15 19 19 O 1.21550 * 119.99869 * 185.42618 * 18 17 16 20 20 C 1.47911 * 120.00066 * 5.42433 * 18 17 16 21 21 C 1.39622 * 119.99532 * 34.08014 * 20 18 17 22 22 C 1.37723 * 120.00631 * 179.72409 * 21 20 18 23 23 C 1.39673 * 119.99360 * 0.55076 * 22 21 20 24 24 C 1.43202 * 120.00989 * 179.74186 * 23 22 21 25 25 N 9.44691 * 94.62012 * 154.47950 * 14 1 2 26 26 C 1.39679 * 119.98695 * 359.72423 * 23 22 21 27 27 C 1.37726 * 119.99586 * 0.02562 * 26 23 22 28 28 C 1.46931 * 118.74097 * 53.60971 * 17 16 15 29 29 C 1.53044 * 109.45816 * 201.32114 * 14 13 3 30 30 H 1.08999 * 109.47089 * 304.90605 * 1 2 3 31 31 H 1.09002 * 109.47020 * 64.90245 * 1 2 3 32 32 H 1.08998 * 109.46895 * 184.90237 * 1 2 3 33 33 H 1.09003 * 109.47320 * 239.99916 * 2 1 3 34 34 H 1.09000 * 109.47467 * 119.99865 * 2 1 3 35 35 H 0.96996 * 119.99991 * 179.97438 * 8 7 5 36 36 H 1.00907 * 111.00157 * 77.13492 * 13 3 2 37 37 H 1.08994 * 109.44977 * 321.28330 * 14 13 3 38 38 H 1.09006 * 109.48984 * 301.33091 * 15 14 13 39 39 H 1.08994 * 109.50335 * 61.42803 * 15 14 13 40 40 H 1.08994 * 109.58761 * 185.57367 * 16 15 14 41 41 H 1.08999 * 109.70732 * 65.21134 * 16 15 14 42 42 H 1.08003 * 119.99479 * 0.02562 * 21 20 18 43 43 H 1.07997 * 120.00538 * 180.29133 * 22 21 20 44 44 H 1.08005 * 120.00115 * 179.97438 * 26 23 22 45 45 H 1.07997 * 119.99867 * 180.02562 * 27 26 23 46 46 H 1.08994 * 109.58422 * 186.60460 * 28 17 16 47 47 H 1.09001 * 109.69964 * 66.25018 * 28 17 16 48 48 H 1.09008 * 109.49746 * 298.56372 * 29 14 13 49 49 H 1.08999 * 109.50093 * 58.65894 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6327 1.9719 -0.8614 5 6 3.5451 1.4431 -0.0757 6 1 4.1254 1.8965 0.7143 7 6 4.1814 0.8648 -1.1536 8 7 3.4749 0.3123 -2.1154 9 14 6.0471 0.8662 -1.2478 10 1 6.5765 -0.3581 -0.5950 11 1 6.4709 0.8911 -2.6707 12 1 6.5770 2.0665 -0.5523 13 7 1.6116 2.1133 1.2346 14 6 1.6278 3.5734 1.0732 15 6 0.3501 4.0217 0.3600 16 6 0.3863 5.5404 0.1625 17 7 0.6063 6.1815 1.4661 18 6 -0.2317 7.1389 1.9106 19 8 0.0148 7.7309 2.9432 20 6 -1.4514 7.4694 1.1418 21 6 -2.1312 6.4673 0.4467 22 6 -3.2701 6.7737 -0.2646 23 6 -3.7385 8.0890 -0.3000 24 6 -4.9196 8.4090 -1.0439 25 7 -5.8565 8.6626 -1.6341 26 6 -3.0550 9.0923 0.3908 27 6 -1.9191 8.7845 1.1062 28 6 1.7569 5.7588 2.2762 29 6 1.7054 4.2376 2.4498 30 1 -0.3633 0.5881 0.8428 31 1 -0.3633 0.4359 -0.9307 32 1 -0.3633 -1.0239 0.0878 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9225 -0.0942 -2.8738 36 1 2.1822 1.8297 2.0171 37 1 2.4954 3.8634 0.4807 38 1 0.2839 3.5301 -0.6107 39 1 -0.5168 3.7538 0.9638 40 1 -0.5624 5.8773 -0.2549 41 1 1.1980 5.8036 -0.5157 42 1 -1.7666 5.4510 0.4707 43 1 -3.7985 5.9977 -0.7984 44 1 -3.4168 10.1096 0.3633 45 1 -1.3908 9.5601 1.6407 46 1 1.7123 6.2399 3.2532 47 1 2.6828 6.0380 1.7733 48 1 0.8256 3.9677 3.0341 49 1 2.6036 3.8998 2.9668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173424760.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:41 Heat of formation + Delta-G solvation = 14.979160 kcal Electronic energy + Delta-G solvation = -29486.761414 eV Core-core repulsion = 25606.331709 eV Total energy + Delta-G solvation = -3880.429705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.79808 -39.96130 -38.98922 -37.49870 -37.23284 -34.78783 -33.56735 -32.94434 -32.29632 -31.52411 -30.92015 -28.16848 -26.46420 -24.97660 -24.63381 -23.88946 -23.58789 -21.74265 -21.18978 -20.23445 -20.07917 -18.57774 -18.47616 -17.41039 -16.80393 -16.66419 -16.23833 -15.97873 -15.74743 -15.48226 -15.35049 -15.17125 -15.00885 -14.79414 -14.69873 -14.43013 -14.27775 -14.03859 -13.90507 -13.50737 -13.44040 -13.23143 -13.22119 -13.02897 -13.00100 -12.90046 -12.52083 -12.49799 -12.18862 -12.09495 -11.94321 -11.79323 -11.48344 -11.35457 -11.21902 -10.95509 -10.81728 -10.39799 -10.08928 -9.97976 -9.66073 -8.98251 -8.00979 -6.22112 -0.62020 0.28247 1.38380 1.40332 1.41902 1.48547 1.56913 1.89326 2.08976 2.42171 2.74571 2.81834 3.18709 3.35893 3.61705 3.81536 3.86088 3.92970 3.97908 4.16547 4.18405 4.34815 4.39353 4.45129 4.59879 4.63517 4.67980 4.73912 4.82534 4.85617 4.89468 4.95413 4.96128 5.01368 5.04240 5.11567 5.18943 5.26643 5.28188 5.30110 5.47405 5.51341 5.53998 5.61475 5.66167 5.71961 5.85993 6.18483 6.28191 6.34487 6.38655 6.46598 6.91463 7.02817 7.08468 7.49385 8.94193 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013562 B = 0.002630 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.132782 B =10644.444915 C =11545.741643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.226 3.774 4 H 0.011 0.989 5 C -0.554 4.554 6 H 0.047 0.953 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.941 3.059 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.675 5.675 14 C 0.092 3.908 15 C -0.113 4.113 16 C 0.083 3.917 17 N -0.596 5.596 18 C 0.555 3.445 19 O -0.573 6.573 20 C -0.108 4.108 21 C -0.099 4.099 22 C -0.064 4.064 23 C -0.011 4.011 24 C 0.279 3.721 25 N -0.457 5.457 26 C -0.062 4.062 27 C -0.069 4.069 28 C 0.118 3.882 29 C -0.120 4.120 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.022 0.978 35 H 0.260 0.740 36 H 0.328 0.672 37 H 0.021 0.979 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.132 0.868 41 H 0.069 0.931 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.147 0.853 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 14.089 5.236 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.117 3.883 4 H 0.029 0.971 5 C -0.594 4.594 6 H 0.065 0.935 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.768 3.232 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.304 5.304 14 C -0.018 4.018 15 C -0.152 4.152 16 C -0.039 4.039 17 N -0.327 5.327 18 C 0.345 3.655 19 O -0.454 6.454 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.084 4.084 23 C -0.015 4.015 24 C -0.036 4.036 25 N -0.132 5.132 26 C -0.082 4.082 27 C -0.088 4.088 28 C -0.005 4.005 29 C -0.158 4.158 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.144 0.856 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.149 0.851 41 H 0.088 0.912 42 H 0.178 0.822 43 H 0.179 0.821 44 H 0.180 0.820 45 H 0.164 0.836 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.656 14.620 4.532 19.861 hybrid contribution 2.847 -0.436 -0.134 2.884 sum -9.808 14.184 4.397 17.797 Atomic orbital electron populations 1.21560 0.96179 0.99717 1.00731 1.21379 0.94572 0.98729 0.99702 1.18874 0.90708 0.91144 0.87525 0.97140 1.22196 0.94431 1.36961 1.05779 0.93458 1.25565 1.01436 0.95090 0.95629 1.69985 1.36179 1.38471 1.10184 0.85831 0.82082 0.78293 0.77015 1.20570 1.21194 1.19750 1.60889 1.57843 1.04973 1.06680 1.21317 0.96443 0.88662 0.95427 1.21820 0.98298 0.93923 1.01173 1.22632 1.05184 0.92490 0.83565 1.48070 1.27077 1.37408 1.20155 1.18688 0.83249 0.78970 0.84578 1.90762 1.75788 1.52599 1.26204 1.20114 0.95698 0.96018 0.99354 1.21663 0.94533 1.00363 0.95102 1.21359 0.94779 0.95017 0.97289 1.16192 0.90644 0.95371 0.99298 1.25794 0.92628 0.92597 0.92595 1.81317 1.12292 1.08865 1.10760 1.21323 0.93233 0.99941 0.93735 1.21219 0.95486 0.95136 0.96971 1.21577 0.87944 0.94445 0.96533 1.21953 1.02986 0.94017 0.96885 0.91860 0.94732 0.94252 0.92456 0.95895 0.93061 0.85591 0.96131 0.91600 0.90369 0.85113 0.91217 0.82200 0.82083 0.81970 0.83555 0.89258 0.91123 0.90877 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 9.85 71.98 0.71 -3.84 16 2 C -0.11 -4.70 5.44 30.60 0.17 -4.53 16 3 C 0.23 10.16 1.84 44.17 0.08 10.24 16 4 H 0.01 0.53 6.85 -2.39 -0.02 0.52 16 5 C -0.55 -28.01 8.06 25.60 0.21 -27.80 16 6 H 0.05 2.38 7.79 -2.91 -0.02 2.36 16 7 C 0.02 1.19 5.30 84.66 0.45 1.64 16 8 N -0.91 -49.60 11.30 21.45 0.24 -49.35 16 9 Si 0.94 41.76 29.54 68.60 2.03 43.79 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 N -0.68 -24.32 5.32 -473.18 -2.52 -26.84 16 14 C 0.09 2.82 2.29 44.94 0.10 2.92 16 15 C -0.11 -2.84 5.21 30.67 0.16 -2.68 16 16 C 0.08 1.65 5.53 86.36 0.48 2.13 16 17 N -0.60 -13.16 2.97 -822.23 -2.44 -15.61 16 18 C 0.56 12.73 7.40 86.81 0.64 13.37 16 19 O -0.57 -16.91 16.24 -3.87 -0.06 -16.97 16 20 C -0.11 -1.78 5.45 -20.05 -0.11 -1.89 16 21 C -0.10 -1.25 7.38 22.48 0.17 -1.08 16 22 C -0.06 -0.65 9.73 22.49 0.22 -0.43 16 23 C -0.01 -0.13 5.73 -21.34 -0.12 -0.25 16 24 C 0.28 4.31 15.32 88.33 1.35 5.66 16 25 N -0.46 -9.69 18.54 19.00 0.35 -9.34 16 26 C -0.06 -0.60 9.73 22.50 0.22 -0.38 16 27 C -0.07 -0.91 9.59 22.48 0.22 -0.70 16 28 C 0.12 2.77 6.42 86.36 0.55 3.33 16 29 C -0.12 -3.01 5.40 30.67 0.17 -2.85 16 30 H 0.06 2.15 7.56 -2.39 -0.02 2.13 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 2.95 5.99 -2.39 -0.01 2.93 16 34 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 36 H 0.33 11.93 8.17 -89.69 -0.73 11.20 16 37 H 0.02 0.76 7.51 -2.39 -0.02 0.74 16 38 H 0.07 1.88 7.10 -2.38 -0.02 1.87 16 39 H 0.08 1.81 7.65 -2.39 -0.02 1.79 16 40 H 0.13 1.92 3.48 -2.41 -0.01 1.91 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.16 1.93 5.03 -2.91 -0.01 1.91 16 43 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 44 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 45 H 0.15 1.85 7.98 -2.91 -0.02 1.82 16 46 H 0.09 2.17 7.04 -2.39 -0.02 2.15 16 47 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 49 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 Total: -1.00 -63.34 394.43 3.50 -59.84 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.25 Total: 21.63 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 5.65 Total: -7.15 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -4.37 Total: -101.13 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.06 Total: -16.97 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -63.34 3.50 -59.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173424760.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.815 kcal (2) G-P(sol) polarization free energy of solvation -63.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds