Wall clock time and date at job start Wed Apr 1 2020 01:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46763 * 2 1 4 4 C 1.52995 * 109.47276 * 120.00188 * 2 1 3 5 5 H 1.09002 * 109.47364 * 305.34415 * 4 2 1 6 6 F 1.39898 * 109.46805 * 185.34230 * 4 2 1 7 7 C 1.50696 * 109.47014 * 65.34606 * 4 2 1 8 8 O 1.21280 * 120.00389 * 65.23016 * 7 4 2 9 9 N 1.34781 * 119.99738 * 245.23188 * 7 4 2 10 10 C 1.47412 * 125.59265 * 359.97389 * 9 7 4 11 11 C 1.54861 * 104.82079 * 204.38805 * 10 9 7 12 12 C 1.55180 * 101.72646 * 322.76928 * 11 10 9 13 13 H 1.08994 * 113.88895 * 158.47092 * 12 11 10 14 14 C 1.53748 * 108.29724 * 285.33920 * 12 11 10 15 15 N 1.47008 * 108.07760 * 124.46231 * 14 12 11 16 16 C 1.46901 * 110.99783 * 123.95413 * 15 14 12 17 17 C 1.50705 * 109.46950 * 169.99924 * 16 15 14 18 18 O 1.21292 * 119.99739 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99749 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99851 * 180.02562 * 19 17 16 21 21 H 1.08009 * 119.99949 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00272 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99860 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00283 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46959 * 89.99668 * 24 22 20 26 26 H 1.48497 * 109.47083 * 209.99764 * 24 22 20 27 27 H 1.48501 * 109.46865 * 330.00014 * 24 22 20 28 28 C 1.47135 * 109.23534 * 1.23423 * 15 14 12 29 29 C 1.46712 * 125.59074 * 180.02562 * 9 7 4 30 30 H 1.08998 * 112.08197 * 55.82897 * 29 9 7 31 31 H 1.08997 * 109.47142 * 299.99563 * 1 2 3 32 32 H 1.08997 * 109.47177 * 59.99828 * 1 2 3 33 33 H 1.09007 * 109.46879 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46965 * 240.00708 * 2 1 3 35 35 H 1.08998 * 109.46743 * 185.01837 * 3 2 1 36 36 H 1.08997 * 109.47171 * 305.02154 * 3 2 1 37 37 H 1.09004 * 109.46713 * 65.01879 * 3 2 1 38 38 H 1.09007 * 110.36754 * 323.22622 * 10 9 7 39 39 H 1.09000 * 110.36475 * 85.43701 * 10 9 7 40 40 H 1.08998 * 110.97363 * 204.65659 * 11 10 9 41 41 H 1.09004 * 110.97311 * 80.87809 * 11 10 9 42 42 H 1.09000 * 109.74599 * 244.12695 * 14 12 11 43 43 H 1.09001 * 109.75240 * 4.79989 * 14 12 11 44 44 H 1.08994 * 109.47339 * 289.99822 * 16 15 14 45 45 H 1.09004 * 109.46962 * 50.00114 * 16 15 14 46 46 H 0.96998 * 120.00176 * 0.02562 * 19 17 16 47 47 H 0.97004 * 120.00111 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.99112 * 222.73159 * 28 15 14 49 49 H 1.09005 * 110.02622 * 101.43232 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6007 -0.2657 2.1366 6 9 3.4337 -0.6158 1.3121 7 6 1.6488 -2.1751 1.1847 8 8 2.1124 -2.8903 0.3219 9 7 0.7834 -2.6806 2.0859 10 6 0.1481 -1.9267 3.1819 11 6 -0.2067 -2.9959 4.2445 12 6 -0.6347 -4.1939 3.3558 13 1 -0.5747 -5.1595 3.8579 14 6 -2.0297 -3.8954 2.7824 15 7 -1.9517 -3.9949 1.3178 16 6 -2.9298 -4.9625 0.8031 17 6 -2.9944 -4.8608 -0.6991 18 8 -2.2948 -4.0606 -1.2834 19 7 -3.8295 -5.6590 -1.3933 20 6 -3.8879 -5.5669 -2.7599 21 1 -3.2643 -4.8549 -3.2803 22 6 -4.7492 -6.3894 -3.4756 23 7 -5.5076 -7.2560 -2.8425 24 14 -4.8282 -6.2643 -5.3377 25 1 -3.8393 -7.1950 -5.9387 26 1 -6.1923 -6.6250 -5.8006 27 1 -4.5157 -4.8736 -5.7541 28 6 -0.5833 -4.3711 0.9297 29 6 0.3201 -4.0717 2.1377 30 1 1.1483 -4.7772 2.2039 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1263 1.4439 -0.0899 36 1 1.6051 1.9817 -0.8416 37 1 1.7518 1.9297 0.9316 38 1 0.8454 -1.1979 3.5950 39 1 -0.7539 -1.4286 2.8265 40 1 -1.0319 -2.6621 4.8735 41 1 0.6645 -3.2498 4.8485 42 1 -2.7476 -4.6218 3.1633 43 1 -2.3375 -2.8893 3.0674 44 1 -2.6273 -5.9706 1.0863 45 1 -3.9115 -4.7459 1.2245 46 1 -4.3893 -6.2987 -0.9260 47 1 -6.1086 -7.8305 -3.3422 48 1 -0.2642 -3.7813 0.0703 49 1 -0.5424 -5.4333 0.6882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188818490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:18 Heat of formation + Delta-G solvation = -109.360738 kcal Electronic energy + Delta-G solvation = -31608.690877 eV Core-core repulsion = 27292.100165 eV Total energy + Delta-G solvation = -4316.590712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.00804 -40.98328 -38.80698 -37.89959 -35.71393 -35.53626 -33.81834 -32.23189 -31.23617 -30.43536 -28.34251 -27.26774 -26.89966 -26.59365 -24.36478 -23.20826 -21.83867 -20.90569 -20.21367 -19.35085 -19.08940 -18.01299 -17.71224 -16.75500 -16.44585 -15.94921 -15.70916 -15.39769 -15.05257 -14.67247 -14.60368 -14.37749 -14.22073 -13.99230 -13.76653 -13.51850 -13.25920 -13.08436 -12.88984 -12.78691 -12.41964 -12.30488 -12.23776 -12.17735 -12.06745 -11.84347 -11.50232 -11.30675 -11.23809 -11.21343 -11.15814 -11.02692 -10.93573 -10.86892 -10.69674 -10.36495 -10.18443 -9.72055 -9.46075 -8.78859 -8.41511 -7.93568 -7.85013 -6.38474 -3.78829 2.39902 2.65524 3.20396 3.28634 3.34879 3.89362 3.94649 4.04378 4.19116 4.20578 4.27602 4.34048 4.36009 4.55841 4.65951 4.85809 4.95706 4.97482 5.04319 5.14260 5.22582 5.25215 5.28278 5.36389 5.42587 5.45921 5.50698 5.51613 5.62274 5.67725 5.71328 5.77630 5.78907 5.82765 5.90033 5.94329 5.97663 6.08157 6.17519 6.27563 6.31742 6.60652 7.22464 7.26542 7.36007 7.58580 7.97787 8.10030 8.65899 9.22237 9.58402 10.10839 10.79491 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.012715 B = 0.003134 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.578249 B = 8930.766412 C =10393.109589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.089 3.911 5 H 0.098 0.902 6 F -0.191 7.191 7 C 0.512 3.488 8 O -0.514 6.514 9 N -0.597 5.597 10 C 0.095 3.905 11 C -0.121 4.121 12 C -0.119 4.119 13 H 0.104 0.896 14 C 0.048 3.952 15 N -0.503 5.503 16 C 0.042 3.958 17 C 0.443 3.557 18 O -0.574 6.574 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.904 5.904 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.051 3.949 29 C 0.128 3.872 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.088 0.912 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.100 0.900 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.496 11.410 18.051 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 C -0.202 4.202 4 C 0.050 3.950 5 H 0.116 0.884 6 F -0.171 7.171 7 C 0.298 3.702 8 O -0.388 6.388 9 N -0.332 5.332 10 C -0.028 4.028 11 C -0.160 4.160 12 C -0.139 4.139 13 H 0.122 0.878 14 C -0.080 4.080 15 N -0.227 5.227 16 C -0.090 4.090 17 C 0.229 3.771 18 O -0.457 6.457 19 N -0.204 5.204 20 C -0.426 4.426 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.546 5.546 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.077 4.077 29 C 0.023 3.977 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.118 0.882 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.045 11.948 16.804 22.935 hybrid contribution -0.328 -1.325 -0.246 1.387 sum 9.717 10.624 16.557 21.941 Atomic orbital electron populations 1.21834 0.92665 1.03772 1.02489 1.21645 0.97838 0.97001 0.96890 1.21806 1.01639 0.94432 1.02360 1.21671 0.77456 0.93717 1.02162 0.88441 1.92856 1.29799 1.96715 1.97745 1.20502 0.78930 0.89722 0.81067 1.90775 1.53279 1.60459 1.34258 1.48276 1.44066 1.10763 1.30111 1.22482 0.98204 0.95066 0.87054 1.22795 1.02078 0.94454 0.96642 1.23295 0.95478 0.99564 0.95525 0.87791 1.22837 0.95099 1.01925 0.88178 1.62755 1.04222 1.47654 1.08047 1.22142 0.96841 0.93895 0.96113 1.19751 0.84562 0.84898 0.87933 1.90530 1.45388 1.39297 1.70505 1.41851 1.36817 1.34370 1.07365 1.19689 1.21718 1.19660 0.81507 0.87994 1.25234 0.96167 0.95988 1.00577 1.69611 1.25542 1.22827 1.36582 0.85876 0.77319 0.78856 0.82368 1.20449 1.20955 1.19423 1.22981 0.86627 1.00221 0.97842 1.22373 0.96406 0.83311 0.95563 0.89104 0.92462 0.91329 0.91038 0.88912 0.92000 0.91565 0.92455 0.90667 0.90112 0.89263 0.90493 0.92477 0.90256 0.93363 0.89376 0.77596 0.91960 0.88194 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.01 37.16 0.33 -1.40 16 2 C -0.11 -1.31 2.72 -90.62 -0.25 -1.56 16 3 C -0.15 -1.29 8.94 37.16 0.33 -0.96 16 4 C 0.09 1.04 3.16 -27.89 -0.09 0.95 16 5 H 0.10 0.82 6.03 -51.93 -0.31 0.51 16 6 F -0.19 -2.52 16.44 2.25 0.04 -2.48 16 7 C 0.51 7.49 5.58 -10.99 -0.06 7.43 16 8 O -0.51 -9.85 16.70 5.56 0.09 -9.75 16 9 N -0.60 -7.30 3.01 -162.26 -0.49 -7.79 16 10 C 0.09 0.77 5.99 -2.56 -0.02 0.75 16 11 C -0.12 -0.80 6.30 -24.60 -0.16 -0.95 16 12 C -0.12 -1.08 4.25 -87.88 -0.37 -1.46 16 13 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 14 C 0.05 0.52 6.06 -3.38 -0.02 0.50 16 15 N -0.50 -8.03 4.83 -234.78 -1.13 -9.17 16 16 C 0.04 0.73 4.99 -4.97 -0.02 0.71 16 17 C 0.44 10.56 7.57 -10.98 -0.08 10.48 16 18 O -0.57 -15.76 14.66 5.55 0.08 -15.68 16 19 N -0.57 -14.51 5.29 -10.96 -0.06 -14.56 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.84 13.05 55.50 0.72 -24.11 16 24 Si 0.93 21.44 29.55 -169.99 -5.02 16.42 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.05 0.87 5.20 -3.29 -0.02 0.85 16 29 C 0.13 1.63 3.66 -66.21 -0.24 1.39 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.07 7.39 -51.92 -0.38 0.69 16 34 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.06 0.56 7.84 -51.93 -0.41 0.16 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.45 6.83 -51.93 -0.35 0.10 16 39 H 0.08 0.67 7.49 -51.93 -0.39 0.28 16 40 H 0.09 0.43 7.96 -51.93 -0.41 0.01 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.57 7.53 -51.93 -0.39 0.18 16 43 H 0.08 0.79 6.78 -51.93 -0.35 0.44 16 44 H 0.05 0.78 7.87 -51.93 -0.41 0.37 16 45 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 46 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.10 2.14 6.62 -51.93 -0.34 1.79 16 49 H 0.05 0.89 7.54 -51.93 -0.39 0.50 16 LS Contribution 389.81 15.07 5.87 5.87 Total: -1.00 -34.62 389.81 -8.57 -43.19 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -7.78 Total: 9.36 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -0.90 Total: 8.69 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.96 Total: -55.63 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.17 Total: -25.43 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.62 -8.57 -43.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188818490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.167 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds