Wall clock time and date at job start Wed Apr 1 2020 01:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46763 * 2 1 4 4 C 1.52995 * 109.47276 * 120.00188 * 2 1 3 5 5 H 1.09002 * 109.47364 * 305.34415 * 4 2 1 6 6 F 1.39898 * 109.46805 * 185.34230 * 4 2 1 7 7 C 1.50696 * 109.47014 * 65.34606 * 4 2 1 8 8 O 1.21280 * 120.00389 * 65.23016 * 7 4 2 9 9 N 1.34781 * 119.99738 * 245.23188 * 7 4 2 10 10 C 1.47412 * 125.59265 * 359.97389 * 9 7 4 11 11 C 1.54861 * 104.82079 * 204.38805 * 10 9 7 12 12 C 1.55180 * 101.72646 * 322.76928 * 11 10 9 13 13 H 1.08994 * 113.88895 * 158.47092 * 12 11 10 14 14 C 1.53748 * 108.29724 * 285.33920 * 12 11 10 15 15 N 1.47008 * 108.07760 * 124.46231 * 14 12 11 16 16 C 1.46901 * 110.99783 * 123.95413 * 15 14 12 17 17 C 1.50705 * 109.46950 * 169.99924 * 16 15 14 18 18 O 1.21292 * 119.99739 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99749 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99851 * 180.02562 * 19 17 16 21 21 H 1.08009 * 119.99949 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00272 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99860 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00283 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46959 * 89.99668 * 24 22 20 26 26 H 1.48497 * 109.47083 * 209.99764 * 24 22 20 27 27 H 1.48501 * 109.46865 * 330.00014 * 24 22 20 28 28 C 1.47135 * 109.23534 * 1.23423 * 15 14 12 29 29 C 1.46712 * 125.59074 * 180.02562 * 9 7 4 30 30 H 1.08998 * 112.08197 * 55.82897 * 29 9 7 31 31 H 1.08997 * 109.47142 * 299.99563 * 1 2 3 32 32 H 1.08997 * 109.47177 * 59.99828 * 1 2 3 33 33 H 1.09007 * 109.46879 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46965 * 240.00708 * 2 1 3 35 35 H 1.08998 * 109.46743 * 185.01837 * 3 2 1 36 36 H 1.08997 * 109.47171 * 305.02154 * 3 2 1 37 37 H 1.09004 * 109.46713 * 65.01879 * 3 2 1 38 38 H 1.09007 * 110.36754 * 323.22622 * 10 9 7 39 39 H 1.09000 * 110.36475 * 85.43701 * 10 9 7 40 40 H 1.08998 * 110.97363 * 204.65659 * 11 10 9 41 41 H 1.09004 * 110.97311 * 80.87809 * 11 10 9 42 42 H 1.09000 * 109.74599 * 244.12695 * 14 12 11 43 43 H 1.09001 * 109.75240 * 4.79989 * 14 12 11 44 44 H 1.08994 * 109.47339 * 289.99822 * 16 15 14 45 45 H 1.09004 * 109.46962 * 50.00114 * 16 15 14 46 46 H 0.96998 * 120.00176 * 0.02562 * 19 17 16 47 47 H 0.97004 * 120.00111 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.99112 * 222.73159 * 28 15 14 49 49 H 1.09005 * 110.02622 * 101.43232 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6007 -0.2657 2.1366 6 9 3.4337 -0.6158 1.3121 7 6 1.6488 -2.1751 1.1847 8 8 2.1124 -2.8903 0.3219 9 7 0.7834 -2.6806 2.0859 10 6 0.1481 -1.9267 3.1819 11 6 -0.2067 -2.9959 4.2445 12 6 -0.6347 -4.1939 3.3558 13 1 -0.5747 -5.1595 3.8579 14 6 -2.0297 -3.8954 2.7824 15 7 -1.9517 -3.9949 1.3178 16 6 -2.9298 -4.9625 0.8031 17 6 -2.9944 -4.8608 -0.6991 18 8 -2.2948 -4.0606 -1.2834 19 7 -3.8295 -5.6590 -1.3933 20 6 -3.8879 -5.5669 -2.7599 21 1 -3.2643 -4.8549 -3.2803 22 6 -4.7492 -6.3894 -3.4756 23 7 -5.5076 -7.2560 -2.8425 24 14 -4.8282 -6.2643 -5.3377 25 1 -3.8393 -7.1950 -5.9387 26 1 -6.1923 -6.6250 -5.8006 27 1 -4.5157 -4.8736 -5.7541 28 6 -0.5833 -4.3711 0.9297 29 6 0.3201 -4.0717 2.1377 30 1 1.1483 -4.7772 2.2039 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1263 1.4439 -0.0899 36 1 1.6051 1.9817 -0.8416 37 1 1.7518 1.9297 0.9316 38 1 0.8454 -1.1979 3.5950 39 1 -0.7539 -1.4286 2.8265 40 1 -1.0319 -2.6621 4.8735 41 1 0.6645 -3.2498 4.8485 42 1 -2.7476 -4.6218 3.1633 43 1 -2.3375 -2.8893 3.0674 44 1 -2.6273 -5.9706 1.0863 45 1 -3.9115 -4.7459 1.2245 46 1 -4.3893 -6.2987 -0.9260 47 1 -6.1086 -7.8305 -3.3422 48 1 -0.2642 -3.7813 0.0703 49 1 -0.5424 -5.4333 0.6882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188818490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:17 Heat of formation + Delta-G solvation = -135.459915 kcal Electronic energy + Delta-G solvation = -31609.822623 eV Core-core repulsion = 27292.100165 eV Total energy + Delta-G solvation = -4317.722457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.00982 -41.98850 -40.28223 -39.44068 -36.86425 -36.58636 -35.84864 -33.33653 -33.14493 -31.56539 -29.41429 -28.16823 -27.99357 -27.85100 -26.16222 -24.09006 -22.95776 -21.87716 -21.13514 -20.98017 -20.26778 -19.90849 -18.86785 -17.91484 -17.58628 -17.39667 -16.82391 -16.51392 -16.50126 -16.26615 -15.94645 -15.62155 -15.48944 -15.13828 -15.03762 -14.85351 -14.34243 -14.26247 -14.01689 -13.71626 -13.66620 -13.58600 -13.36401 -13.21097 -13.12467 -13.06263 -12.96480 -12.83315 -12.49061 -12.44922 -12.19297 -12.15500 -12.10494 -11.96035 -11.92166 -11.71319 -11.53245 -11.51513 -10.85341 -10.31086 -10.02327 -9.81425 -9.17128 -8.48907 -5.97217 1.28871 1.34508 1.37790 1.50617 1.70110 2.05201 2.26418 2.81038 3.06023 3.17831 3.25652 3.34651 3.46436 3.50291 3.52595 3.70203 3.77239 4.05623 4.13009 4.20344 4.23103 4.29714 4.34252 4.38789 4.43270 4.47661 4.51855 4.55392 4.71132 4.71982 4.74340 4.82917 4.86594 4.91171 4.93669 5.10649 5.14272 5.19443 5.25028 5.27942 5.32606 5.34397 5.38184 5.86114 6.01400 6.18783 6.34818 6.59840 6.90762 7.11914 7.55330 8.12915 8.68637 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.012715 B = 0.003134 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.578249 B = 8930.766412 C =10393.109589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.138 4.138 4 C 0.095 3.905 5 H 0.144 0.856 6 F -0.199 7.199 7 C 0.499 3.501 8 O -0.579 6.579 9 N -0.593 5.593 10 C 0.081 3.919 11 C -0.107 4.107 12 C -0.104 4.104 13 H 0.127 0.873 14 C 0.044 3.956 15 N -0.521 5.521 16 C 0.055 3.945 17 C 0.437 3.563 18 O -0.618 6.618 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.072 0.928 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.266 1.266 27 H -0.275 1.275 28 C 0.060 3.940 29 C 0.123 3.877 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.117 0.883 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.040 0.960 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.402 12.668 21.733 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 C -0.195 4.195 4 C 0.056 3.944 5 H 0.161 0.839 6 F -0.180 7.180 7 C 0.287 3.713 8 O -0.458 6.458 9 N -0.326 5.326 10 C -0.040 4.040 11 C -0.144 4.144 12 C -0.123 4.123 13 H 0.145 0.855 14 C -0.082 4.082 15 N -0.245 5.245 16 C -0.076 4.076 17 C 0.224 3.776 18 O -0.504 6.504 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.090 0.910 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.813 3.187 25 H -0.199 1.199 26 H -0.190 1.190 27 H -0.200 1.200 28 C -0.069 4.069 29 C 0.018 3.982 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.140 0.860 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.135 0.865 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.059 0.941 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.911 13.209 20.564 26.015 hybrid contribution -0.006 -1.722 -1.405 2.222 sum 8.905 11.487 19.159 24.048 Atomic orbital electron populations 1.21745 0.92679 1.01350 1.04071 1.21618 0.97715 0.98552 0.95520 1.21778 1.01337 0.92303 1.04120 1.21831 0.77011 0.91705 1.03873 0.83915 1.92835 1.30751 1.96588 1.97833 1.21206 0.78790 0.90821 0.80520 1.90733 1.55950 1.62249 1.36888 1.48416 1.42855 1.11058 1.30245 1.22912 0.98827 0.96086 0.86175 1.22849 1.03862 0.91912 0.95810 1.23325 0.92681 1.02184 0.94123 0.85483 1.23030 0.96916 1.03737 0.84534 1.62611 1.02958 1.47134 1.11810 1.22016 0.98941 0.95574 0.91053 1.20971 0.82660 0.83166 0.90784 1.90514 1.46676 1.40882 1.72340 1.41911 1.37602 1.35082 1.06743 1.19591 1.22909 1.20577 0.83157 0.90954 1.25975 0.95227 0.95142 1.04726 1.69660 1.25450 1.22784 1.38147 0.84984 0.78118 0.78461 0.77107 1.19853 1.19041 1.20032 1.22670 0.88641 0.97593 0.98011 1.22382 0.96244 0.83890 0.95637 0.89857 0.88971 0.91615 0.95302 0.92803 0.92348 0.90958 0.89706 0.87588 0.89841 0.85987 0.88895 0.90322 0.88422 0.91457 0.86464 0.76986 0.91262 0.94121 0.95395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.01 71.98 0.65 -2.67 16 2 C -0.11 -2.69 2.72 -10.79 -0.03 -2.72 16 3 C -0.14 -2.26 8.94 71.98 0.64 -1.62 16 4 C 0.09 2.15 3.16 29.84 0.09 2.24 16 5 H 0.14 1.90 6.03 -2.39 -0.01 1.89 16 6 F -0.20 -5.21 16.44 44.97 0.74 -4.47 16 7 C 0.50 15.32 5.58 87.65 0.49 15.81 16 8 O -0.58 -24.57 16.70 -3.03 -0.05 -24.62 16 9 N -0.59 -14.24 3.01 -785.65 -2.36 -16.60 16 10 C 0.08 1.01 5.99 86.84 0.52 1.53 16 11 C -0.11 -0.83 6.30 31.98 0.20 -0.63 16 12 C -0.10 -1.52 4.25 -9.02 -0.04 -1.56 16 13 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 14 C 0.04 0.82 6.06 86.53 0.52 1.35 16 15 N -0.52 -16.53 4.83 -896.70 -4.33 -20.87 16 16 C 0.06 1.93 4.99 85.56 0.43 2.35 16 17 C 0.44 21.76 7.57 87.66 0.66 22.42 16 18 O -0.62 -36.49 14.66 -3.07 -0.04 -36.53 16 19 N -0.58 -30.60 5.29 -306.98 -1.62 -32.22 16 20 C -0.33 -19.68 9.68 84.04 0.81 -18.87 16 21 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 24 Si 0.99 44.54 29.55 68.60 2.03 46.57 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 27 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 28 C 0.06 2.16 5.20 86.52 0.45 2.61 16 29 C 0.12 3.15 3.66 45.99 0.17 3.32 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.03 0.92 7.39 -2.38 -0.02 0.90 16 34 H 0.05 1.66 8.07 -2.38 -0.02 1.64 16 35 H 0.06 1.01 7.84 -2.39 -0.02 0.99 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 0.94 8.14 -2.38 -0.02 0.93 16 38 H 0.11 0.72 6.83 -2.38 -0.02 0.70 16 39 H 0.08 1.06 7.49 -2.39 -0.02 1.04 16 40 H 0.12 0.30 7.96 -2.39 -0.02 0.28 16 41 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.08 1.18 7.53 -2.39 -0.02 1.17 16 43 H 0.10 1.50 6.78 -2.39 -0.02 1.48 16 44 H 0.07 2.10 7.87 -2.39 -0.02 2.08 16 45 H 0.12 3.41 8.03 -2.38 -0.02 3.39 16 46 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 47 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 48 H 0.04 1.94 6.62 -2.39 -0.02 1.93 16 49 H 0.03 1.08 7.54 -2.38 -0.02 1.06 16 Total: -1.00 -85.34 389.81 0.91 -84.43 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.23 Total: 31.19 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 6.04 Total: 23.42 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -8.04 Total: -119.97 kcal Atomic # 8 Polarization: -61.06 SS G_CDS: -0.10 Total: -61.15 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.74 Total: -4.47 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -85.34 0.91 -84.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188818490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.034 kcal (2) G-P(sol) polarization free energy of solvation -85.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds