Wall clock time and date at job start Wed Apr 1 2020 01:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47246 * 2 1 4 4 H 1.09000 * 109.47237 * 306.60777 * 3 2 1 5 5 C 1.50701 * 109.47009 * 186.60850 * 3 2 1 6 6 H 1.07998 * 119.99416 * 243.88626 * 5 3 2 7 7 C 1.37870 * 120.00094 * 63.88231 * 5 3 2 8 8 N 1.31519 * 119.99926 * 193.74670 * 7 5 3 9 9 Si 1.86804 * 120.00254 * 13.75106 * 7 5 3 10 10 H 1.48500 * 109.47167 * 93.04136 * 9 7 5 11 11 H 1.48497 * 109.47039 * 213.04400 * 9 7 5 12 12 H 1.48502 * 109.46609 * 333.04451 * 9 7 5 13 13 N 1.46903 * 109.46834 * 66.60730 * 3 2 1 14 14 C 1.46900 * 110.99819 * 261.74312 * 13 3 2 15 15 C 1.53042 * 109.46032 * 157.26724 * 14 13 3 16 16 C 1.53188 * 109.31220 * 181.37088 * 15 14 13 17 17 N 1.46926 * 108.77875 * 305.36497 * 16 15 14 18 18 C 1.34775 * 120.63082 * 233.58929 * 17 16 15 19 19 O 1.21554 * 120.00265 * 5.34951 * 18 17 16 20 20 C 1.47820 * 119.99845 * 185.35515 * 18 17 16 21 21 C 1.39311 * 120.20659 * 51.38041 * 20 18 17 22 22 C 1.38114 * 119.99629 * 180.27181 * 21 20 18 23 23 C 1.38447 * 120.42956 * 359.49451 * 22 21 20 24 24 C 1.38109 * 120.42583 * 0.50844 * 23 22 21 25 25 C 1.39360 * 119.98565 * 359.74805 * 24 23 22 26 26 C 1.43200 * 120.20674 * 180.02562 * 25 24 23 27 27 N 9.66489 * 82.40676 * 27.64189 * 2 1 3 28 28 C 1.46928 * 118.73560 * 53.86007 * 17 16 15 29 29 C 1.53046 * 109.44978 * 277.32808 * 14 13 3 30 30 H 1.08998 * 109.47393 * 301.91449 * 1 2 3 31 31 H 1.09000 * 109.47193 * 61.90973 * 1 2 3 32 32 H 1.09005 * 109.47192 * 181.91379 * 1 2 3 33 33 H 1.08998 * 109.47208 * 239.99597 * 2 1 3 34 34 H 1.09006 * 109.47239 * 119.99958 * 2 1 3 35 35 H 0.96997 * 119.99525 * 180.02562 * 8 7 5 36 36 H 1.00892 * 111.00474 * 25.69977 * 13 3 2 37 37 H 1.08999 * 109.45977 * 37.29275 * 14 13 3 38 38 H 1.08996 * 109.49447 * 61.41957 * 15 14 13 39 39 H 1.08998 * 109.49448 * 301.32398 * 15 14 13 40 40 H 1.09001 * 109.58581 * 185.57825 * 16 15 14 41 41 H 1.09000 * 109.58818 * 65.15255 * 16 15 14 42 42 H 1.07996 * 120.00340 * 0.02562 * 21 20 18 43 43 H 1.07996 * 119.78781 * 179.72767 * 22 21 20 44 44 H 1.08002 * 119.78388 * 180.27603 * 23 22 21 45 45 H 1.07999 * 120.00433 * 179.76743 * 24 23 22 46 46 H 1.08994 * 109.58742 * 65.93181 * 28 17 16 47 47 H 1.09006 * 109.58576 * 186.35233 * 28 17 16 48 48 H 1.09002 * 109.49892 * 298.57554 * 29 14 13 49 49 H 1.09000 * 109.49476 * 58.67190 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5834 1.9894 -0.8249 5 6 3.5381 1.4456 -0.1635 6 1 4.1668 1.8259 0.6280 7 6 4.1060 0.9629 -1.3234 8 7 5.3961 0.7115 -1.3688 9 14 3.0430 0.6661 -2.8306 10 1 3.0613 1.8736 -3.6948 11 1 3.5740 -0.4943 -3.5900 12 1 1.6487 0.3831 -2.4049 13 7 1.6848 2.0874 1.2712 14 6 0.4695 2.9002 1.1276 15 6 -0.1860 3.0838 2.4983 16 6 -1.4709 3.9026 2.3398 17 7 -1.1485 5.1602 1.6518 18 6 -1.4996 6.3458 2.1879 19 8 -2.0011 6.3879 3.2944 20 6 -1.2749 7.5951 1.4303 21 6 -1.7313 7.7114 0.1193 22 6 -1.5141 8.8786 -0.5865 23 6 -0.8531 9.9422 0.0038 24 6 -0.3931 9.8460 1.3025 25 6 -0.5981 8.6745 2.0290 26 6 -0.1236 8.5699 3.3761 27 7 0.2529 8.4867 4.4446 28 6 -0.4414 5.1004 0.3652 29 6 0.8370 4.2684 0.5486 30 1 -0.3634 0.5433 0.8723 31 1 -0.3633 0.4839 -0.9066 32 1 -0.3634 -1.0271 0.0343 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.7956 0.3723 -2.1850 36 1 1.5781 1.4043 2.0059 37 1 -0.2266 2.3970 0.4566 38 1 0.5005 3.6089 3.1624 39 1 -0.4261 2.1079 2.9203 40 1 -1.8889 4.1206 3.3226 41 1 -2.1934 3.3384 1.7501 42 1 -2.2515 6.8875 -0.3466 43 1 -1.8655 8.9635 -1.6041 44 1 -0.6928 10.8517 -0.5562 45 1 0.1250 10.6786 1.7550 46 1 -1.0816 4.6318 -0.3821 47 1 -0.1798 6.1089 0.0448 48 1 1.5138 4.7824 1.2310 49 1 1.3248 4.1356 -0.4171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255160292.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:51 Heat of formation + Delta-G solvation = 29.860196 kcal Electronic energy + Delta-G solvation = -29986.619592 eV Core-core repulsion = 26106.835178 eV Total energy + Delta-G solvation = -3879.784415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.94576 -39.19202 -37.95540 -36.59023 -36.05236 -33.31941 -32.19028 -31.83682 -31.70766 -30.78705 -29.61964 -27.23527 -25.21008 -24.16630 -23.42685 -23.18498 -22.37797 -20.83427 -19.95555 -19.65958 -18.70761 -17.67697 -16.76627 -16.50912 -16.03145 -15.62137 -15.37263 -14.99672 -14.76762 -14.73044 -14.19301 -14.15190 -13.95721 -13.68345 -13.51697 -13.40925 -13.12590 -13.06906 -12.97566 -12.74716 -12.56398 -12.23434 -12.16343 -12.01608 -11.78311 -11.75064 -11.43168 -11.18606 -10.93833 -10.85206 -10.78172 -10.56721 -10.12436 -10.09413 -9.97173 -9.44997 -9.42068 -9.40379 -9.28347 -8.79534 -8.42008 -7.39859 -6.07193 -4.00041 0.22005 0.63055 2.36349 2.52626 2.63159 2.80040 3.23502 3.32622 3.34987 3.51126 3.56335 4.04853 4.34184 4.40292 4.48420 4.73321 4.76391 4.78840 4.87533 4.91820 5.07553 5.12423 5.19363 5.27108 5.32239 5.35792 5.53733 5.67263 5.68165 5.69635 5.72049 5.77424 5.80303 5.83746 5.85702 5.94990 5.97314 6.11598 6.21743 6.32034 6.41534 6.47438 6.51368 6.60502 6.74392 6.85012 7.15573 7.16440 7.32216 7.74410 7.87534 7.92987 8.31106 8.70490 9.09981 9.58639 11.06429 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.003027 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.651526 B = 9248.901671 C = 9885.625879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.153 4.153 3 C 0.195 3.805 4 H 0.025 0.975 5 C -0.499 4.499 6 H 0.079 0.921 7 C 0.070 3.930 8 N -0.896 5.896 9 Si 0.858 3.142 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.253 1.253 13 N -0.668 5.668 14 C 0.085 3.915 15 C -0.135 4.135 16 C 0.115 3.885 17 N -0.597 5.597 18 C 0.553 3.447 19 O -0.529 6.529 20 C -0.078 4.078 21 C -0.089 4.089 22 C -0.095 4.095 23 C -0.101 4.101 24 C -0.075 4.075 25 C 0.020 3.980 26 C 0.245 3.755 27 N -0.392 5.392 28 C 0.099 3.901 29 C -0.122 4.122 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.262 0.738 36 H 0.330 0.670 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.073 0.927 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.604 15.040 -1.404 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.193 4.193 3 C 0.086 3.914 4 H 0.043 0.957 5 C -0.537 4.537 6 H 0.097 0.903 7 C -0.131 4.131 8 N -0.534 5.534 9 Si 0.685 3.315 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.177 1.177 13 N -0.298 5.298 14 C -0.026 4.026 15 C -0.174 4.174 16 C -0.007 4.007 17 N -0.330 5.330 18 C 0.340 3.660 19 O -0.406 6.406 20 C -0.084 4.084 21 C -0.108 4.108 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.095 4.095 25 C 0.016 3.984 26 C -0.071 4.071 27 N -0.067 5.067 28 C -0.024 4.024 29 C -0.161 4.161 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.148 0.852 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.158 0.842 46 H 0.090 0.910 47 H 0.107 0.893 48 H 0.092 0.908 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.693 15.356 0.649 22.691 hybrid contribution -1.158 -1.049 -1.565 2.211 sum -17.851 14.307 -0.916 22.895 Atomic orbital electron populations 1.21975 0.98576 1.00160 1.00535 1.22675 0.92762 1.01848 1.01967 1.19575 0.96729 0.88045 0.87052 0.95732 1.20993 0.89304 1.40382 1.03000 0.90267 1.24916 0.94695 0.94939 0.98554 1.69963 1.11228 1.44669 1.27564 0.87327 0.82248 0.77897 0.84011 1.20809 1.21520 1.17729 1.60623 1.32161 1.28261 1.08777 1.21550 0.91808 0.94541 0.94671 1.22103 0.96583 1.00113 0.98598 1.21652 0.97171 0.83307 0.98578 1.48069 1.56563 1.05532 1.22815 1.18287 0.78786 0.83356 0.85554 1.90827 1.44178 1.86592 1.19007 1.19924 0.99833 0.93729 0.94898 1.21301 0.98711 0.98907 0.91833 1.21374 0.97079 0.92454 1.00415 1.21296 0.96902 0.99367 0.94363 1.21196 0.98200 0.95824 0.94317 1.15837 1.00624 0.94939 0.86984 1.25433 0.94241 0.94646 0.92821 1.81212 1.08122 1.06258 1.11128 1.22189 0.94202 1.01956 0.84017 1.22008 0.95540 0.95397 1.03117 0.93427 0.93690 0.94061 0.92030 0.92519 0.92828 0.85223 0.94002 0.90691 0.90876 0.88950 0.91240 0.84235 0.84387 0.84331 0.84213 0.90989 0.89343 0.90837 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.82 37.16 0.33 -2.16 16 2 C -0.15 -3.06 4.48 -26.73 -0.12 -3.18 16 3 C 0.19 4.20 1.51 -68.86 -0.10 4.10 16 4 H 0.02 0.54 5.76 -51.93 -0.30 0.25 16 5 C -0.50 -13.45 9.30 -34.44 -0.32 -13.77 16 6 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.07 1.95 5.34 -17.82 -0.10 1.86 16 8 N -0.90 -26.83 13.96 55.43 0.77 -26.05 16 9 Si 0.86 20.18 25.73 -169.99 -4.37 15.80 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.25 -5.48 5.37 56.52 0.30 -5.18 16 13 N -0.67 -12.46 5.89 -100.90 -0.59 -13.05 16 14 C 0.08 1.26 1.46 -67.67 -0.10 1.16 16 15 C -0.14 -1.75 5.38 -26.61 -0.14 -1.89 16 16 C 0.12 1.36 6.44 -3.71 -0.02 1.33 16 17 N -0.60 -7.11 2.97 -173.63 -0.51 -7.62 16 18 C 0.55 7.26 6.67 -12.34 -0.08 7.18 16 19 O -0.53 -8.80 15.59 5.32 0.08 -8.72 16 20 C -0.08 -0.80 4.75 -104.62 -0.50 -1.30 16 21 C -0.09 -0.61 7.63 -39.23 -0.30 -0.91 16 22 C -0.09 -0.46 10.03 -39.55 -0.40 -0.85 16 23 C -0.10 -0.48 10.03 -39.55 -0.40 -0.87 16 24 C -0.07 -0.50 9.74 -39.21 -0.38 -0.88 16 25 C 0.02 0.21 5.76 -106.59 -0.61 -0.41 16 26 C 0.24 3.31 13.78 -22.47 -0.31 3.00 16 27 N -0.39 -6.29 18.54 41.84 0.78 -5.52 16 28 C 0.10 1.05 5.45 -3.49 -0.02 1.03 16 29 C -0.12 -1.74 5.56 -26.39 -0.15 -1.89 16 30 H 0.05 0.69 6.21 -51.93 -0.32 0.36 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.33 4.74 -51.93 -0.25 1.09 16 34 H 0.06 1.13 7.99 -51.93 -0.41 0.71 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.33 5.86 7.82 -39.30 -0.31 5.56 16 37 H 0.04 0.62 5.83 -51.93 -0.30 0.32 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 40 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.14 0.76 7.54 -52.49 -0.40 0.36 16 43 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 44 H 0.14 0.28 8.06 -52.49 -0.42 -0.14 16 45 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.81 5.23 -51.93 -0.27 0.54 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.08 1.31 7.46 -51.93 -0.39 0.93 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -33.96 387.44 -8.92 -42.88 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.19 Total: 4.89 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -3.72 Total: -8.45 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.44 Total: -52.24 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.37 Total: 15.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.96 -8.92 -42.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160292.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.741 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds